Wall clock time and date at job start Tue Mar 31 2020 20:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47062 * 2 1 4 4 C 1.52998 * 109.47268 * 239.99865 * 2 1 3 5 5 C 1.50695 * 109.47055 * 65.00117 * 4 2 1 6 6 C 1.38265 * 119.99532 * 89.99945 * 5 4 2 7 7 C 1.38216 * 120.02522 * 179.97438 * 6 5 4 8 8 C 1.38238 * 120.01508 * 0.02562 * 7 6 5 9 9 C 1.38330 * 119.98552 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 120.01156 * 180.02562 * 9 8 7 11 11 C 1.38196 * 119.99111 * 269.72041 * 5 4 2 12 12 C 1.50708 * 109.46995 * 119.99695 * 2 1 3 13 13 O 1.21283 * 119.99636 * 104.74813 * 12 2 1 14 14 N 1.34769 * 119.99990 * 284.74802 * 12 2 1 15 15 C 1.46502 * 119.99894 * 185.68709 * 14 12 2 16 16 C 1.46497 * 120.00200 * 5.68650 * 14 12 2 17 17 H 1.08998 * 109.47027 * 6.28423 * 16 14 12 18 18 C 1.53000 * 109.47437 * 246.28365 * 16 14 12 19 19 C 1.53004 * 109.47222 * 126.28644 * 16 14 12 20 20 N 1.46508 * 109.46676 * 304.99935 * 19 16 14 21 21 C 1.36940 * 119.99478 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99427 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00512 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47309 * 60.00324 * 25 23 21 27 27 H 1.48503 * 109.47014 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47528 * 300.00356 * 25 23 21 29 29 H 1.09005 * 109.46581 * 173.69224 * 1 2 3 30 30 H 1.08999 * 109.47558 * 293.68417 * 1 2 3 31 31 H 1.08994 * 109.47200 * 53.69070 * 1 2 3 32 32 H 1.09004 * 109.46703 * 184.99986 * 4 2 1 33 33 H 1.08998 * 109.47117 * 304.99641 * 4 2 1 34 34 H 1.07998 * 119.98423 * 359.97364 * 6 5 4 35 35 H 1.08004 * 119.98937 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.00363 * 179.97438 * 8 7 6 37 37 H 1.07993 * 120.00786 * 0.02562 * 11 5 4 38 38 H 1.09001 * 109.47129 * 275.22791 * 15 14 12 39 39 H 1.09004 * 109.47033 * 155.23025 * 15 14 12 40 40 H 1.08999 * 109.47089 * 35.22880 * 15 14 12 41 41 H 1.08995 * 109.47539 * 179.97438 * 18 16 14 42 42 H 1.08998 * 109.47060 * 300.00039 * 18 16 14 43 43 H 1.08997 * 109.46941 * 59.99731 * 18 16 14 44 44 H 1.08995 * 109.47141 * 64.99821 * 19 16 14 45 45 H 1.09005 * 109.47333 * 185.00398 * 19 16 14 46 46 H 0.96995 * 120.00138 * 359.97438 * 20 19 16 47 47 H 0.96999 * 120.00588 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 6 2.4818 1.0331 -2.9792 7 6 2.1170 1.7470 -4.1051 8 6 0.9114 1.4857 -4.7291 9 6 0.0703 0.5092 -4.2266 10 17 -1.4436 0.1801 -5.0100 11 6 0.4386 -0.2091 -3.1027 12 6 2.0323 -0.7104 1.2306 13 8 2.4865 -1.8313 1.1406 14 7 1.9768 -0.1000 2.4308 15 6 2.5772 -0.7376 3.6053 16 6 1.3161 1.2010 2.5612 17 1 0.8373 1.4615 1.6173 18 6 2.3542 2.2668 2.9177 19 6 0.2599 1.1283 3.6658 20 7 -0.6661 0.0284 3.3843 21 6 -1.7018 -0.2310 4.2417 22 1 -1.8363 0.3755 5.1252 23 6 -2.5795 -1.2728 3.9747 24 7 -2.4159 -2.0115 2.8978 25 14 -3.9928 -1.6262 5.1439 26 1 -4.8707 -0.4319 5.2346 27 1 -4.7776 -2.7806 4.6371 28 1 -3.4536 -1.9474 6.4897 29 1 -0.3633 -1.0215 -0.1129 30 1 -0.3634 0.4128 0.9411 31 1 -0.3633 0.6085 -0.8281 32 1 3.1264 -0.7994 -1.2054 33 1 1.6055 -1.7198 -1.2951 34 1 3.4235 1.2379 -2.4918 35 1 2.7741 2.5090 -4.4975 36 1 0.6264 2.0439 -5.6086 37 1 -0.2159 -0.9743 -2.7124 38 1 1.8657 -1.4385 4.0417 39 1 2.8341 0.0246 4.3409 40 1 3.4785 -1.2732 3.3070 41 1 1.8628 3.2349 3.0143 42 1 2.8330 2.0063 3.8616 43 1 3.1067 2.3187 2.1309 44 1 0.7484 0.9555 4.6247 45 1 -0.2922 2.0674 3.7031 46 1 -0.5455 -0.5160 2.5906 47 1 -3.0294 -2.7393 2.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568321419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:13 Heat of formation + Delta-G solvation = -30.012974 kcal Electronic energy + Delta-G solvation = -27864.969854 eV Core-core repulsion = 24072.893684 eV Total energy + Delta-G solvation = -3792.076170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49151 -40.26911 -38.14857 -37.49431 -35.95128 -35.72208 -33.18967 -32.05040 -31.67157 -31.57227 -28.23991 -27.80370 -27.34802 -24.66316 -24.28776 -23.55463 -22.56203 -21.74806 -19.90796 -18.98603 -18.52078 -17.67097 -17.06101 -16.70794 -16.52652 -16.37551 -16.30055 -15.46282 -15.36972 -15.33401 -14.98370 -14.59080 -14.53313 -14.18368 -13.88942 -13.76159 -13.66779 -13.47964 -13.30162 -13.15422 -13.05701 -12.80163 -12.75132 -12.64289 -12.45198 -12.41021 -12.31620 -12.17347 -12.04860 -11.95913 -11.74298 -11.71653 -11.64234 -10.93187 -10.66814 -9.81671 -9.60793 -9.58890 -8.96586 -7.92850 -5.21045 0.21943 0.32435 1.18890 1.45588 1.48025 1.54183 1.63129 2.09844 2.56002 2.69221 3.37558 3.42433 3.76832 3.78414 3.90116 3.95824 4.03367 4.08131 4.20670 4.26720 4.30961 4.37344 4.43608 4.48175 4.51521 4.61565 4.66913 4.79518 4.82459 4.88191 4.89984 4.91155 4.96840 5.01714 5.02209 5.13452 5.16943 5.30403 5.34018 5.37910 5.42303 5.50088 5.61120 5.64671 5.90711 6.28059 6.46353 7.20736 7.36049 8.14036 8.35756 9.29591 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.003541 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.813659 B = 7905.586390 C = 9672.211452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.123 0.877 4 C -0.055 4.055 5 C -0.068 4.068 6 C -0.109 4.109 7 C -0.098 4.098 8 C -0.118 4.118 9 C -0.046 4.046 10 Cl -0.083 7.083 11 C -0.121 4.121 12 C 0.512 3.488 13 O -0.586 6.586 14 N -0.596 5.596 15 C 0.096 3.904 16 C 0.117 3.883 17 H 0.102 0.898 18 C -0.151 4.151 19 C 0.135 3.865 20 N -0.743 5.743 21 C -0.243 4.243 22 H 0.077 0.923 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.968 3.032 26 H -0.275 1.275 27 H -0.300 1.300 28 H -0.280 1.280 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.117 0.883 38 H 0.022 0.978 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.026 0.974 45 H 0.042 0.958 46 H 0.378 0.622 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.408 13.485 -13.266 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.141 0.859 4 C -0.092 4.092 5 C -0.069 4.069 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.136 4.136 9 C -0.072 4.072 10 Cl -0.054 7.054 11 C -0.139 4.139 12 C 0.301 3.699 13 O -0.467 6.467 14 N -0.327 5.327 15 C -0.047 4.047 16 C 0.014 3.986 17 H 0.120 0.880 18 C -0.209 4.209 19 C 0.008 3.992 20 N -0.387 5.387 21 C -0.375 4.375 22 H 0.095 0.905 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.798 3.202 26 H -0.201 1.201 27 H -0.227 1.227 28 H -0.207 1.207 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.167 0.833 37 H 0.135 0.865 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.212 0.788 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.407 12.912 -13.193 22.815 hybrid contribution -1.574 -1.332 0.576 2.141 sum 11.832 11.580 -12.617 20.816 Atomic orbital electron populations 1.21900 0.92973 1.01955 1.03187 1.21228 0.97034 1.01438 0.91276 0.85888 1.20321 1.01922 0.97519 0.89476 1.19732 0.93862 0.97242 0.96026 1.21460 1.00177 0.94569 0.96482 1.21464 0.95684 0.99628 0.94836 1.21338 0.94242 0.96779 1.01279 1.21072 0.89248 1.00372 0.96541 1.98370 1.31826 1.95016 1.80170 1.21041 0.97408 1.00415 0.95070 1.21118 0.77426 0.85706 0.85612 1.90633 1.48800 1.20283 1.86961 1.47846 1.55663 1.21189 1.08010 1.21462 0.97060 0.98206 0.87986 1.21795 0.93438 0.82700 1.00672 0.87985 1.22076 0.98236 0.97725 1.02843 1.21278 0.90384 0.91240 0.96262 1.42610 1.31182 1.36576 1.28356 1.19586 1.03757 1.10932 1.03259 0.90527 1.25497 1.02407 0.98980 0.99637 1.69823 1.40334 1.22660 1.28867 0.85290 0.79516 0.77017 0.78392 1.20149 1.22690 1.20680 0.94565 0.92047 0.90052 0.89311 0.92264 0.83003 0.81752 0.83337 0.86462 0.95920 0.88548 0.91500 0.89331 0.91667 0.90618 0.95632 0.94018 0.78842 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 7.94 71.98 0.57 -4.13 16 2 C -0.09 -2.46 1.85 -11.54 -0.02 -2.48 16 3 H 0.12 2.58 7.34 -2.39 -0.02 2.56 16 4 C -0.05 -1.40 4.17 29.85 0.12 -1.28 16 5 C -0.07 -1.48 4.71 -19.87 -0.09 -1.57 16 6 C -0.11 -1.71 9.70 22.27 0.22 -1.50 16 7 C -0.10 -1.30 10.05 22.26 0.22 -1.08 16 8 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16 9 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 10 Cl -0.08 -1.88 28.96 -2.72 -0.08 -1.96 16 11 C -0.12 -2.92 7.93 22.29 0.18 -2.75 16 12 C 0.51 18.08 6.89 87.66 0.60 18.68 16 13 O -0.59 -25.18 15.82 -3.04 -0.05 -25.23 16 14 N -0.60 -19.33 2.20 -822.58 -1.81 -21.15 16 15 C 0.10 3.08 9.31 127.77 1.19 4.27 16 16 C 0.12 3.25 2.00 44.99 0.09 3.34 16 17 H 0.10 2.76 4.27 -2.39 -0.01 2.75 16 18 C -0.15 -2.73 9.27 71.98 0.67 -2.07 16 19 C 0.14 4.89 5.44 86.38 0.47 5.36 16 20 N -0.74 -36.44 5.15 -343.43 -1.77 -38.21 16 21 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 24 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 25 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 29 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.06 2.29 4.10 -2.39 -0.01 2.28 16 31 H 0.08 2.33 6.71 -2.39 -0.02 2.31 16 32 H 0.09 2.08 8.09 -2.38 -0.02 2.06 16 33 H 0.06 1.83 8.03 -2.39 -0.02 1.81 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.12 3.20 8.05 -2.91 -0.02 3.17 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 2.44 6.57 -2.38 -0.02 2.42 16 40 H 0.07 2.08 7.67 -2.39 -0.02 2.06 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.15 6.96 -2.39 -0.02 1.13 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.03 0.93 7.55 -2.39 -0.02 0.91 16 45 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.38 19.89 5.59 -92.71 -0.52 19.38 16 47 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.36 388.90 4.95 -68.41 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.46 Total: 33.44 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.88 Total: -4.09 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -3.30 Total: -119.29 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -73.36 4.95 -68.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568321419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.402 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds