Wall clock time and date at job start Tue Mar 31 2020 20:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47264 * 2 1 4 4 C 1.52997 * 109.46784 * 240.00401 * 2 1 3 5 5 N 1.46500 * 109.47322 * 184.99673 * 4 2 1 6 6 C 1.36934 * 120.00386 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00085 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00306 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00175 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47282 * 89.99816 * 10 8 6 12 12 H 1.48498 * 109.47305 * 210.00397 * 10 8 6 13 13 H 1.48506 * 109.46824 * 330.00076 * 10 8 6 14 14 N 1.46499 * 109.47559 * 120.00286 * 2 1 3 15 15 C 1.46499 * 119.99875 * 54.18254 * 14 2 1 16 16 C 1.34773 * 120.00153 * 234.18889 * 14 2 1 17 17 O 1.21280 * 120.00036 * 184.17645 * 16 14 2 18 18 C 1.50694 * 120.00044 * 4.16604 * 16 14 2 19 19 H 1.08999 * 109.47671 * 310.08834 * 18 16 14 20 20 C 1.53006 * 109.46947 * 70.08958 * 18 16 14 21 21 C 1.53003 * 109.47484 * 190.08838 * 18 16 14 22 22 C 1.50690 * 109.47302 * 175.00553 * 21 18 16 23 23 C 1.38262 * 119.99796 * 89.99939 * 22 21 18 24 24 C 1.38225 * 120.02882 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.01015 * 0.25418 * 24 23 22 26 26 C 1.38331 * 119.99041 * 359.51361 * 25 24 23 27 27 Cl 1.73594 * 120.01363 * 180.25049 * 26 25 24 28 28 C 1.38194 * 119.99377 * 270.02089 * 22 21 18 29 29 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46830 * 299.99746 * 1 2 3 31 31 H 1.08995 * 109.47195 * 59.99597 * 1 2 3 32 32 H 1.08999 * 109.47290 * 304.99890 * 4 2 1 33 33 H 1.09002 * 109.47860 * 64.99859 * 4 2 1 34 34 H 0.97006 * 119.99512 * 0.02562 * 5 4 2 35 35 H 0.97002 * 120.00201 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47302 * 265.97229 * 15 14 2 37 37 H 1.08998 * 109.47250 * 25.96478 * 15 14 2 38 38 H 1.08993 * 109.47416 * 145.96720 * 15 14 2 39 39 H 1.09000 * 109.46749 * 305.78211 * 20 18 16 40 40 H 1.08998 * 109.46903 * 65.78210 * 20 18 16 41 41 H 1.09004 * 109.47256 * 185.78595 * 20 18 16 42 42 H 1.08997 * 109.46781 * 54.99754 * 21 18 16 43 43 H 1.08999 * 109.46342 * 295.00255 * 21 18 16 44 44 H 1.08006 * 119.98539 * 359.97438 * 23 22 21 45 45 H 1.07997 * 119.98841 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.99843 * 179.74416 * 25 24 23 47 47 H 1.07998 * 120.00526 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1908 6 6 4.1837 -1.4387 -2.2070 7 1 3.6466 -1.8438 -3.0518 8 6 5.5670 -1.5387 -2.1512 9 7 6.2216 -1.0454 -1.1214 10 14 6.4998 -2.3735 -3.5378 11 1 6.8625 -1.3664 -4.5671 12 1 7.7349 -2.9970 -2.9985 13 1 5.6434 -3.4208 -4.1502 14 7 2.0184 -0.6906 1.1961 15 6 1.5627 -2.0507 1.4940 16 6 2.8870 -0.0748 2.0224 17 8 3.3497 -0.6727 2.9707 18 6 3.2833 1.3567 1.7680 19 1 3.5856 1.4705 0.7270 20 6 2.0934 2.2742 2.0567 21 6 4.4510 1.7329 2.6822 22 6 4.9271 3.1218 2.3432 23 6 4.3758 4.2168 2.9825 24 6 4.8124 5.4911 2.6725 25 6 5.7970 5.6717 1.7191 26 6 6.3524 4.5763 1.0826 27 17 7.5934 4.8021 -0.1101 28 6 5.9145 3.3010 1.3931 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1583 -2.1371 34 1 3.9823 -0.4627 -0.4317 35 1 7.1883 -1.1157 -1.0822 36 1 0.7066 -2.0077 2.1675 37 1 1.2719 -2.5474 0.5684 38 1 2.3701 -2.6089 1.9678 39 1 1.2301 1.9419 1.4803 40 1 1.8563 2.2379 3.1200 41 1 2.3463 3.2966 1.7755 42 1 5.2668 1.0241 2.5398 43 1 4.1225 1.7048 3.7211 44 1 3.6036 4.0764 3.7245 45 1 4.3810 6.3459 3.1719 46 1 6.1351 6.6678 1.4740 47 1 6.3451 2.4456 0.8938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568321421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:21 Heat of formation + Delta-G solvation = -14.453075 kcal Electronic energy + Delta-G solvation = -28129.321414 eV Core-core repulsion = 24337.919971 eV Total energy + Delta-G solvation = -3791.401442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19666 -39.21282 -36.69775 -36.40017 -34.76217 -33.89309 -31.48423 -31.13842 -30.57772 -30.01038 -27.05542 -26.71448 -25.63515 -23.34973 -22.69795 -22.46844 -21.31123 -20.69519 -18.33144 -17.35948 -17.07720 -16.61923 -15.69402 -15.61057 -15.36462 -15.07803 -14.68456 -14.20365 -14.01441 -13.71937 -13.63684 -13.39181 -13.20511 -13.01780 -12.78202 -12.50126 -12.32949 -12.28202 -12.07372 -11.92269 -11.74194 -11.55165 -11.42305 -11.34694 -11.23068 -10.93443 -10.90531 -10.80243 -10.75460 -10.67845 -10.53236 -10.07180 -9.72431 -9.29559 -8.89256 -8.81692 -8.60927 -8.22844 -6.93427 -5.75864 -3.05078 1.17529 1.29838 2.23469 3.07022 3.36050 3.43910 3.48892 3.50871 3.66303 4.55939 4.61163 4.79865 4.92111 5.00908 5.06010 5.10574 5.14779 5.29147 5.30313 5.41742 5.43628 5.50742 5.57990 5.62705 5.74716 5.76437 5.80469 5.82343 5.89497 5.96330 5.99566 6.01020 6.11850 6.19805 6.24850 6.29006 6.31391 6.34065 6.38840 6.50045 6.63325 6.64794 6.85094 6.94434 7.69412 7.79480 8.41644 8.60744 9.53548 10.09130 10.43970 11.46279 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007789 B = 0.004852 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.166745 B = 5769.500480 C = 8341.282685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.096 0.904 4 C 0.140 3.860 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.069 0.931 8 C -0.009 4.009 9 N -0.927 5.927 10 Si 0.904 3.096 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.596 5.596 15 C 0.093 3.907 16 C 0.527 3.473 17 O -0.546 6.546 18 C -0.106 4.106 19 H 0.104 0.896 20 C -0.148 4.148 21 C -0.061 4.061 22 C -0.060 4.060 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.031 4.031 27 Cl -0.072 7.072 28 C -0.099 4.099 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.030 0.970 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 12.611 7.859 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 H 0.114 0.886 4 C 0.011 3.989 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.087 0.913 8 C -0.205 4.205 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.329 5.329 15 C -0.050 4.050 16 C 0.316 3.684 17 O -0.423 6.423 18 C -0.127 4.127 19 H 0.122 0.878 20 C -0.205 4.205 21 C -0.099 4.099 22 C -0.060 4.060 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.057 4.057 27 Cl -0.043 7.043 28 C -0.117 4.117 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.617 12.198 8.102 16.991 hybrid contribution 0.892 -0.399 -0.907 1.333 sum -7.725 11.799 7.195 15.832 Atomic orbital electron populations 1.22095 0.94860 1.02625 1.02065 1.21648 0.94015 0.97536 0.85515 0.88643 1.21054 0.87190 0.97129 0.93541 1.42257 0.99557 1.70389 1.25044 1.19159 0.89378 1.29910 0.98996 0.91304 1.24709 0.96419 1.01493 0.97904 1.69643 1.07220 1.50672 1.29953 0.86238 0.79590 0.79054 0.81556 1.21729 1.21792 1.20865 1.47668 1.45264 1.15711 1.24219 1.21464 0.99413 0.83291 1.00826 1.20415 0.77658 0.88434 0.81925 1.90648 1.53777 1.67069 1.30834 1.21247 0.96604 0.92144 1.02681 0.87796 1.21959 0.96864 0.99568 1.02144 1.20420 0.97898 0.92158 0.99401 1.19869 0.95110 0.95770 0.95270 1.21166 0.99907 0.92006 1.00118 1.21026 0.97051 0.97353 0.97614 1.20995 0.97764 0.97815 0.97360 1.20945 0.94640 0.95016 0.95105 1.98378 1.52529 1.97394 1.56038 1.21238 0.96874 0.96263 0.97349 0.92037 0.92430 0.91285 0.96037 0.95272 0.78285 0.93494 0.93720 0.91101 0.90976 0.91755 0.92215 0.91290 0.89351 0.90175 0.85577 0.85452 0.85413 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.90 37.16 0.33 -1.42 16 2 C 0.12 1.73 1.83 -67.93 -0.12 1.61 16 3 H 0.10 1.39 4.54 -51.93 -0.24 1.15 16 4 C 0.14 2.63 5.63 -4.04 -0.02 2.61 16 5 N -0.73 -17.81 5.43 -59.91 -0.33 -18.13 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 9 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 10 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 N -0.60 -9.81 2.33 -173.94 -0.41 -10.22 16 15 C 0.09 1.44 9.31 59.85 0.56 2.00 16 16 C 0.53 9.45 6.27 -10.99 -0.07 9.39 16 17 O -0.55 -11.49 15.65 5.56 0.09 -11.40 16 18 C -0.11 -1.59 1.85 -91.77 -0.17 -1.76 16 19 H 0.10 1.76 6.73 -51.93 -0.35 1.41 16 20 C -0.15 -1.69 8.13 37.16 0.30 -1.39 16 21 C -0.06 -0.90 4.14 -27.89 -0.12 -1.02 16 22 C -0.06 -0.80 4.72 -104.63 -0.49 -1.29 16 23 C -0.11 -1.24 8.12 -39.58 -0.32 -1.56 16 24 C -0.11 -1.13 10.05 -39.59 -0.40 -1.52 16 25 C -0.12 -1.36 9.83 -39.55 -0.39 -1.75 16 26 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 27 Cl -0.07 -1.02 28.96 -51.86 -1.50 -2.52 16 28 C -0.10 -1.47 9.49 -39.55 -0.38 -1.85 16 29 H 0.06 0.67 7.41 -51.93 -0.38 0.28 16 30 H 0.06 0.57 7.61 -51.93 -0.40 0.18 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.42 7.09 -51.93 -0.37 0.05 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.38 9.88 6.33 -40.82 -0.26 9.62 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.05 6.68 -51.93 -0.35 0.70 16 38 H 0.07 1.28 7.49 -51.93 -0.39 0.89 16 39 H 0.06 0.69 5.44 -51.93 -0.28 0.41 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.72 6.66 -51.93 -0.35 0.37 16 42 H 0.09 1.54 8.04 -51.93 -0.42 1.12 16 43 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 44 H 0.13 1.13 8.04 -52.48 -0.42 0.70 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 47 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -32.25 389.37 -9.48 -41.73 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.12 Total: 9.97 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.78 Total: -5.83 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.01 Total: -55.27 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.25 -9.48 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568321421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.280 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds