Wall clock time and date at job start Tue Mar 31 2020 20:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47500 * 2 1 4 4 N 1.46502 * 109.46858 * 119.99663 * 2 1 3 5 5 C 1.36935 * 120.00077 * 275.00217 * 4 2 1 6 6 H 1.07992 * 120.00203 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99785 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47052 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46957 * 119.99571 * 9 7 5 12 12 H 1.48499 * 109.47447 * 240.00074 * 9 7 5 13 13 C 1.52995 * 109.46991 * 239.99464 * 2 1 3 14 14 H 1.08996 * 109.52859 * 299.92033 * 13 2 1 15 15 C 1.53040 * 109.49694 * 60.00525 * 13 2 1 16 16 C 1.53044 * 109.53662 * 181.31470 * 15 13 2 17 17 C 1.53191 * 109.31440 * 298.63203 * 16 15 13 18 18 N 1.46926 * 108.89109 * 54.56430 * 17 16 15 19 19 C 1.34780 * 120.63278 * 126.46534 * 18 17 16 20 20 O 1.21583 * 120.00346 * 180.02562 * 19 18 17 21 21 C 1.47553 * 119.99289 * 0.02562 * 19 18 17 22 22 C 1.39904 * 120.18808 * 89.72912 * 21 19 18 23 23 F 1.35099 * 120.09295 * 359.96893 * 22 21 19 24 24 C 1.38216 * 119.80282 * 179.73886 * 22 21 19 25 25 C 1.38305 * 120.19180 * 0.50988 * 24 22 21 26 26 C 1.38304 * 120.38343 * 359.76113 * 25 24 22 27 27 C 1.38218 * 120.18888 * 359.97438 * 26 25 24 28 28 F 1.35102 * 120.09519 * 179.97438 * 27 26 25 29 29 C 1.46957 * 118.71783 * 306.64359 * 18 17 16 30 30 H 1.09005 * 109.47100 * 300.00591 * 1 2 3 31 31 H 1.09002 * 109.46633 * 60.00184 * 1 2 3 32 32 H 1.08997 * 109.47500 * 180.02562 * 1 2 3 33 33 H 0.97008 * 119.99787 * 94.99626 * 4 2 1 34 34 H 0.96998 * 120.00203 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.45892 * 61.29609 * 15 13 2 36 36 H 1.09001 * 109.45142 * 301.32837 * 15 13 2 37 37 H 1.09003 * 109.49852 * 178.68467 * 16 15 13 38 38 H 1.08997 * 109.49691 * 58.58900 * 16 15 13 39 39 H 1.09002 * 109.58786 * 174.42474 * 17 16 15 40 40 H 1.08996 * 109.58870 * 294.70753 * 17 16 15 41 41 H 1.08003 * 119.90392 * 180.27228 * 24 22 21 42 42 H 1.08001 * 119.80938 * 179.74402 * 25 24 22 43 43 H 1.08002 * 119.90661 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.46843 * 293.57352 * 29 18 17 45 45 H 1.08997 * 109.71602 * 173.28846 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0405 2.4242 7 6 2.6121 -0.6617 3.5091 8 7 2.9252 -1.9387 3.4501 9 14 2.7911 0.2704 5.1180 10 1 2.3760 1.6825 4.9208 11 1 1.9307 -0.3581 6.1525 12 1 4.2082 0.2276 5.5599 13 6 2.0399 -0.7214 -1.2491 14 1 1.6783 -1.7496 -1.2493 15 6 1.5302 -0.0004 -2.4992 16 6 2.0126 -0.7401 -3.7491 17 6 3.5442 -0.7372 -3.7801 18 7 4.0466 -1.2953 -2.5172 19 6 4.9232 -2.3191 -2.5194 20 8 5.3312 -2.7725 -1.4676 21 6 5.3877 -2.8897 -3.7984 22 6 6.5243 -2.3716 -4.4284 23 9 7.2011 -1.3456 -3.8677 24 6 6.9555 -2.9158 -5.6236 25 6 6.2607 -3.9624 -6.2021 26 6 5.1328 -4.4769 -5.5890 27 6 4.6908 -3.9484 -4.3908 28 9 3.5885 -4.4521 -3.7937 29 6 3.5719 -0.7183 -1.2518 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2489 -1.6318 1.1527 34 1 3.2485 -2.3959 4.2421 35 1 1.9126 1.0202 -2.5110 36 1 0.4405 0.0202 -2.4873 37 1 1.6299 -0.2396 -4.6385 38 1 1.6511 -1.7681 -3.7257 39 1 3.8940 -1.3463 -4.6136 40 1 3.9054 0.2845 -3.8973 41 1 7.8353 -2.5199 -6.1091 42 1 6.6007 -4.3801 -7.1382 43 1 4.5963 -5.2946 -6.0473 44 1 3.9353 0.3053 -1.1603 45 1 3.9399 -1.3127 -0.4156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568414331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:52 Heat of formation + Delta-G solvation = -88.004597 kcal Electronic energy + Delta-G solvation = -30305.694889 eV Core-core repulsion = 25959.307333 eV Total energy + Delta-G solvation = -4346.387556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.32749 -49.29168 -40.34320 -38.83603 -37.63403 -35.42850 -33.02178 -31.77317 -31.67776 -30.78549 -29.76179 -28.16684 -25.71157 -24.53518 -23.44042 -23.22144 -22.91090 -21.21119 -19.69324 -19.37827 -18.44520 -17.65212 -17.54921 -16.97569 -16.57301 -15.98348 -15.85502 -15.59109 -15.43714 -14.88500 -14.82655 -14.71893 -14.36230 -14.07477 -13.71361 -13.59182 -13.15873 -13.08539 -12.87047 -12.72435 -12.41828 -12.33553 -12.24455 -12.17568 -11.98044 -11.32635 -11.11052 -10.97785 -10.83010 -10.68871 -10.59204 -10.23881 -10.12296 -9.98589 -9.71935 -9.51926 -9.35264 -9.19929 -8.85417 -8.48945 -6.87599 -5.66910 -2.96423 0.38834 0.53564 2.49495 2.80627 3.01813 3.41761 3.49042 3.53822 3.56749 3.96546 4.09325 4.31820 4.42252 4.63297 4.65123 4.74546 4.91160 5.00384 5.19087 5.26079 5.34695 5.37172 5.42760 5.46065 5.54633 5.64449 5.67280 5.70504 5.81085 5.82451 5.94047 6.02921 6.14017 6.22119 6.23945 6.26076 6.45588 6.50099 6.52213 6.72184 6.75470 6.95190 7.14004 7.43292 7.78072 8.15163 8.50365 9.61550 10.19400 10.53728 11.55305 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.003285 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.885445 B = 8520.681965 C = 9245.999804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.071 0.929 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.597 5.597 19 C 0.559 3.441 20 O -0.507 6.507 21 C -0.188 4.188 22 C 0.160 3.840 23 F -0.120 7.120 24 C -0.166 4.166 25 C -0.050 4.050 26 C -0.166 4.166 27 C 0.161 3.839 28 F -0.118 7.118 29 C 0.122 3.878 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.068 0.932 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -1.255 -27.103 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.123 4.123 14 H 0.089 0.911 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.016 4.016 18 N -0.330 5.330 19 C 0.343 3.657 20 O -0.382 6.382 21 C -0.193 4.193 22 C 0.139 3.861 23 F -0.098 7.098 24 C -0.185 4.185 25 C -0.068 4.068 26 C -0.184 4.184 27 C 0.141 3.859 28 F -0.096 7.096 29 C 0.001 3.999 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.086 0.914 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.890 -1.337 -26.304 26.624 hybrid contribution 0.046 0.204 1.134 1.153 sum 3.936 -1.133 -25.171 25.502 Atomic orbital electron populations 1.22478 0.99263 1.00819 0.99871 1.20165 0.91861 0.95234 0.85719 0.93477 1.42472 1.78076 1.10777 1.05297 1.19231 1.36624 0.93785 0.87322 0.91234 1.24741 1.02210 0.95935 0.97992 1.69678 1.50663 1.08611 1.28677 0.86171 0.77283 0.78746 0.84302 1.20640 1.22002 1.21930 1.21771 0.94431 1.00661 0.95456 0.91072 1.21631 1.01156 0.99041 0.93414 1.21916 0.94450 1.01755 0.98987 1.21725 0.95061 0.99190 0.85644 1.48143 1.43165 1.33295 1.08393 1.17781 0.79882 0.80245 0.87745 1.90912 1.55933 1.59604 1.31708 1.20071 0.99127 1.01138 0.98956 1.17343 0.90137 0.86528 0.92054 1.91591 1.78105 1.55492 1.84621 1.21174 1.02894 0.99276 0.95132 1.20973 0.92750 0.93760 0.99321 1.21189 0.99392 1.02998 0.94871 1.17352 0.84269 0.92605 0.91669 1.91608 1.49523 1.85480 1.82999 1.21790 0.94056 0.99106 0.84910 0.92863 0.94284 0.93599 0.78174 0.93586 0.91767 0.91026 0.90831 0.91469 0.90846 0.91039 0.83361 0.83421 0.83323 0.91384 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.18 3.56 2.47 -67.93 -0.17 3.40 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -18.43 4.52 -53.43 -0.24 -18.67 16 5 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 9 Si 0.90 23.05 29.55 -169.99 -5.02 18.03 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 13 C -0.10 -1.73 1.98 -90.50 -0.18 -1.91 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.44 4.85 -26.69 -0.13 -1.57 16 16 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 17 C 0.11 1.22 6.33 -3.71 -0.02 1.20 16 18 N -0.60 -9.44 2.98 -173.96 -0.52 -9.96 16 19 C 0.56 9.89 6.43 -12.46 -0.08 9.81 16 20 O -0.51 -11.50 16.53 5.29 0.09 -11.42 16 21 C -0.19 -2.53 3.64 -104.85 -0.38 -2.92 16 22 C 0.16 1.81 7.29 -38.97 -0.28 1.52 16 23 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 24 C -0.17 -1.21 10.01 -39.56 -0.40 -1.60 16 25 C -0.05 -0.28 10.03 -39.53 -0.40 -0.68 16 26 C -0.17 -1.23 10.01 -39.56 -0.40 -1.63 16 27 C 0.16 1.86 7.14 -38.97 -0.28 1.59 16 28 F -0.12 -1.61 16.83 2.25 0.04 -1.57 16 29 C 0.12 2.23 5.47 -3.69 -0.02 2.21 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.38 10.68 7.62 -40.82 -0.31 10.37 16 34 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.73 6.22 -51.93 -0.32 0.41 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 43 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.11 2.49 6.53 -51.93 -0.34 2.15 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -34.96 374.58 -8.30 -43.27 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.25 Total: 6.71 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.80 Total: -2.09 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.04 Total: -57.04 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.96 -8.30 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.739 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds