Wall clock time and date at job start Tue Mar 31 2020 20:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47500 * 2 1 4 4 N 1.46502 * 109.46858 * 119.99663 * 2 1 3 5 5 C 1.36935 * 120.00077 * 275.00217 * 4 2 1 6 6 H 1.07992 * 120.00203 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99785 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47052 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46957 * 119.99571 * 9 7 5 12 12 H 1.48499 * 109.47447 * 240.00074 * 9 7 5 13 13 C 1.52995 * 109.46991 * 239.99464 * 2 1 3 14 14 H 1.08996 * 109.52859 * 299.92033 * 13 2 1 15 15 C 1.53040 * 109.49694 * 60.00525 * 13 2 1 16 16 C 1.53044 * 109.53662 * 181.31470 * 15 13 2 17 17 C 1.53191 * 109.31440 * 298.63203 * 16 15 13 18 18 N 1.46926 * 108.89109 * 54.56430 * 17 16 15 19 19 C 1.34780 * 120.63278 * 126.46534 * 18 17 16 20 20 O 1.21583 * 120.00346 * 180.02562 * 19 18 17 21 21 C 1.47553 * 119.99289 * 0.02562 * 19 18 17 22 22 C 1.39904 * 120.18808 * 89.72912 * 21 19 18 23 23 F 1.35099 * 120.09295 * 359.96893 * 22 21 19 24 24 C 1.38216 * 119.80282 * 179.73886 * 22 21 19 25 25 C 1.38305 * 120.19180 * 0.50988 * 24 22 21 26 26 C 1.38304 * 120.38343 * 359.76113 * 25 24 22 27 27 C 1.38218 * 120.18888 * 359.97438 * 26 25 24 28 28 F 1.35102 * 120.09519 * 179.97438 * 27 26 25 29 29 C 1.46957 * 118.71783 * 306.64359 * 18 17 16 30 30 H 1.09005 * 109.47100 * 300.00591 * 1 2 3 31 31 H 1.09002 * 109.46633 * 60.00184 * 1 2 3 32 32 H 1.08997 * 109.47500 * 180.02562 * 1 2 3 33 33 H 0.97008 * 119.99787 * 94.99626 * 4 2 1 34 34 H 0.96998 * 120.00203 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.45892 * 61.29609 * 15 13 2 36 36 H 1.09001 * 109.45142 * 301.32837 * 15 13 2 37 37 H 1.09003 * 109.49852 * 178.68467 * 16 15 13 38 38 H 1.08997 * 109.49691 * 58.58900 * 16 15 13 39 39 H 1.09002 * 109.58786 * 174.42474 * 17 16 15 40 40 H 1.08996 * 109.58870 * 294.70753 * 17 16 15 41 41 H 1.08003 * 119.90392 * 180.27228 * 24 22 21 42 42 H 1.08001 * 119.80938 * 179.74402 * 25 24 22 43 43 H 1.08002 * 119.90661 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.46843 * 293.57352 * 29 18 17 45 45 H 1.08997 * 109.71602 * 173.28846 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0405 2.4242 7 6 2.6121 -0.6617 3.5091 8 7 2.9252 -1.9387 3.4501 9 14 2.7911 0.2704 5.1180 10 1 2.3760 1.6825 4.9208 11 1 1.9307 -0.3581 6.1525 12 1 4.2082 0.2276 5.5599 13 6 2.0399 -0.7214 -1.2491 14 1 1.6783 -1.7496 -1.2493 15 6 1.5302 -0.0004 -2.4992 16 6 2.0126 -0.7401 -3.7491 17 6 3.5442 -0.7372 -3.7801 18 7 4.0466 -1.2953 -2.5172 19 6 4.9232 -2.3191 -2.5194 20 8 5.3312 -2.7725 -1.4676 21 6 5.3877 -2.8897 -3.7984 22 6 6.5243 -2.3716 -4.4284 23 9 7.2011 -1.3456 -3.8677 24 6 6.9555 -2.9158 -5.6236 25 6 6.2607 -3.9624 -6.2021 26 6 5.1328 -4.4769 -5.5890 27 6 4.6908 -3.9484 -4.3908 28 9 3.5885 -4.4521 -3.7937 29 6 3.5719 -0.7183 -1.2518 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2489 -1.6318 1.1527 34 1 3.2485 -2.3959 4.2421 35 1 1.9126 1.0202 -2.5110 36 1 0.4405 0.0202 -2.4873 37 1 1.6299 -0.2396 -4.6385 38 1 1.6511 -1.7681 -3.7257 39 1 3.8940 -1.3463 -4.6136 40 1 3.9054 0.2845 -3.8973 41 1 7.8353 -2.5199 -6.1091 42 1 6.6007 -4.3801 -7.1382 43 1 4.5963 -5.2946 -6.0473 44 1 3.9353 0.3053 -1.1603 45 1 3.9399 -1.3127 -0.4156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568414331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:51 Heat of formation + Delta-G solvation = -111.029786 kcal Electronic energy + Delta-G solvation = -30306.693336 eV Core-core repulsion = 25959.307333 eV Total energy + Delta-G solvation = -4347.386003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.22247 -50.20352 -41.57316 -39.73316 -38.95866 -37.04536 -34.74534 -33.27935 -32.59559 -31.46382 -31.35230 -29.83018 -26.90284 -26.11597 -24.87798 -24.13987 -23.94671 -22.45946 -21.19271 -20.56865 -19.33640 -19.16977 -18.57557 -18.45258 -17.67358 -16.94395 -16.81405 -16.77672 -16.51601 -16.28663 -16.11251 -15.64375 -15.54935 -15.49138 -15.38962 -15.02553 -14.43586 -14.27974 -14.10986 -13.93949 -13.81893 -13.49801 -13.13194 -13.06963 -12.98132 -12.92732 -12.83340 -12.60665 -12.41679 -12.14188 -12.06237 -11.88876 -11.74846 -11.49358 -11.29808 -11.14778 -10.96959 -10.17169 -9.90641 -9.82082 -9.01718 -7.93563 -5.22757 -0.35479 -0.14687 1.19048 1.42774 1.44991 1.54600 1.74834 2.23270 2.54637 2.63813 3.11500 3.25380 3.39825 3.64185 3.70556 3.72570 3.78722 3.87265 4.01159 4.11538 4.12391 4.20594 4.33743 4.50105 4.56055 4.58104 4.63135 4.69051 4.81435 4.83782 4.85805 4.89140 4.97147 4.98496 5.02041 5.09258 5.10446 5.23044 5.31852 5.37672 5.45553 5.52891 5.60882 5.62916 6.15964 6.27158 6.83717 7.31890 8.09403 8.31464 9.30368 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.003285 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.885445 B = 8520.681965 C = 9245.999804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.173 3.827 3 H 0.050 0.950 4 N -0.739 5.739 5 C -0.231 4.231 6 H 0.080 0.920 7 C -0.083 4.083 8 N -0.974 5.974 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.299 1.299 13 C -0.089 4.089 14 H 0.047 0.953 15 C -0.108 4.108 16 C -0.125 4.125 17 C 0.100 3.900 18 N -0.594 5.594 19 C 0.549 3.451 20 O -0.582 6.582 21 C -0.215 4.215 22 C 0.136 3.864 23 F -0.140 7.140 24 C -0.146 4.146 25 C -0.023 4.023 26 C -0.146 4.146 27 C 0.134 3.866 28 F -0.141 7.141 29 C 0.128 3.872 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.202 0.798 43 H 0.181 0.819 44 H 0.070 0.930 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -0.032 -32.026 32.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.065 3.935 3 H 0.068 0.932 4 N -0.379 5.379 5 C -0.363 4.363 6 H 0.098 0.902 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.802 3.198 10 H -0.184 1.184 11 H -0.222 1.222 12 H -0.226 1.226 13 C -0.109 4.109 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.021 4.021 18 N -0.325 5.325 19 C 0.336 3.664 20 O -0.462 6.462 21 C -0.220 4.220 22 C 0.116 3.884 23 F -0.118 7.118 24 C -0.164 4.164 25 C -0.041 4.041 26 C -0.165 4.165 27 C 0.114 3.886 28 F -0.120 7.120 29 C 0.006 3.994 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.197 0.803 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.200 0.800 42 H 0.219 0.781 43 H 0.198 0.802 44 H 0.088 0.912 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.472 -0.038 -31.315 31.507 hybrid contribution 0.194 -0.176 2.489 2.503 sum 3.666 -0.214 -28.826 29.059 Atomic orbital electron populations 1.22311 0.97099 1.00585 1.01223 1.20478 0.93213 0.94992 0.84841 0.93168 1.42730 1.78421 1.10122 1.06622 1.19668 1.34329 0.94164 0.88160 0.90226 1.25614 1.03283 0.96847 1.01749 1.69875 1.52927 1.10548 1.29147 0.85079 0.76533 0.78392 0.79840 1.18450 1.22155 1.22617 1.21612 0.92993 0.99668 0.96651 0.93437 1.21630 1.02070 0.99326 0.91533 1.21912 0.93364 1.01405 0.99591 1.22110 0.95923 1.00248 0.83857 1.48282 1.42416 1.32703 1.09098 1.18623 0.79144 0.79877 0.88741 1.90852 1.58593 1.61937 1.34801 1.19855 1.01287 1.03135 0.97725 1.17727 0.89950 0.87083 0.93673 1.91537 1.78442 1.56547 1.85313 1.21634 1.03322 0.98568 0.92869 1.21621 0.90638 0.91715 1.00111 1.21633 0.99550 1.02700 0.92600 1.17765 0.84351 0.93077 0.93384 1.91546 1.50795 1.85825 1.83803 1.21456 0.95261 0.97911 0.84802 0.94510 0.89816 0.94629 0.80283 0.94392 0.90155 0.89329 0.86474 0.92575 0.88930 0.89140 0.80041 0.78107 0.80196 0.91155 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.14 71.98 0.66 -4.71 16 2 C 0.17 6.97 2.47 44.99 0.11 7.08 16 3 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 4 N -0.74 -39.76 4.52 -322.95 -1.46 -41.22 16 5 C -0.23 -13.48 9.93 84.03 0.83 -12.64 16 6 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 7 C -0.08 -5.10 5.50 84.86 0.47 -4.64 16 8 N -0.97 -64.83 13.06 21.65 0.28 -64.54 16 9 Si 0.97 49.07 29.55 68.60 2.03 51.09 16 10 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 12 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 13 C -0.09 -3.09 1.98 -10.72 -0.02 -3.11 16 14 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.11 -2.45 4.85 30.62 0.15 -2.30 16 16 C -0.12 -2.31 6.08 30.67 0.19 -2.12 16 17 C 0.10 2.15 6.33 86.36 0.55 2.70 16 18 N -0.59 -19.95 2.98 -822.56 -2.45 -22.40 16 19 C 0.55 21.24 6.43 86.70 0.56 21.79 16 20 O -0.58 -29.77 16.53 -3.98 -0.07 -29.83 16 21 C -0.22 -5.98 3.64 -20.01 -0.07 -6.05 16 22 C 0.14 2.98 7.29 22.67 0.17 3.14 16 23 F -0.14 -3.77 16.83 44.97 0.76 -3.01 16 24 C -0.15 -1.53 10.01 22.28 0.22 -1.31 16 25 C -0.02 -0.13 10.03 22.30 0.22 0.09 16 26 C -0.15 -1.62 10.01 22.28 0.22 -1.40 16 27 C 0.13 3.04 7.14 22.67 0.16 3.20 16 28 F -0.14 -4.04 16.83 44.97 0.76 -3.28 16 29 C 0.13 5.05 5.47 86.36 0.47 5.53 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.08 2.19 6.40 -2.39 -0.02 2.18 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.37 22.11 7.62 -92.70 -0.71 21.40 16 34 H 0.25 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.76 6.36 -2.39 -0.02 1.75 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.69 6.22 -2.39 -0.01 1.68 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.20 -0.84 8.06 -2.91 -0.02 -0.86 16 43 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 45 H 0.05 2.54 6.53 -2.39 -0.02 2.53 16 Total: -1.00 -88.35 374.58 5.05 -83.30 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.31 Total: 24.63 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.88 Total: 5.25 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -3.63 Total: -128.16 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.07 Total: -29.83 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 1.51 Total: -6.29 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.09 kcal Total: -88.35 5.05 -83.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.729 kcal (2) G-P(sol) polarization free energy of solvation -88.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds