Wall clock time and date at job start Tue Mar 31 2020 20:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46954 * 2 1 4 4 N 1.46494 * 109.46915 * 239.99456 * 2 1 3 5 5 C 1.36945 * 119.99612 * 85.00420 * 4 2 1 6 6 H 1.07999 * 120.00077 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99637 * 179.97438 * 5 4 2 8 8 N 1.31624 * 119.99539 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00216 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46712 * 90.00052 * 9 7 5 11 11 H 1.48499 * 109.46916 * 209.99467 * 9 7 5 12 12 H 1.48492 * 109.46909 * 330.00070 * 9 7 5 13 13 C 1.52999 * 109.46922 * 119.99510 * 2 1 3 14 14 H 1.09002 * 109.49459 * 60.06591 * 13 2 1 15 15 C 1.53033 * 109.50043 * 300.00449 * 13 2 1 16 16 C 1.53042 * 109.54044 * 178.68561 * 15 13 2 17 17 C 1.53195 * 109.31590 * 61.36022 * 16 15 13 18 18 N 1.46924 * 108.77440 * 305.37077 * 17 16 15 19 19 C 1.34772 * 120.62868 * 233.58667 * 18 17 16 20 20 O 1.21595 * 120.00171 * 179.97438 * 19 18 17 21 21 C 1.47541 * 120.00411 * 359.97438 * 19 18 17 22 22 C 1.39906 * 120.18504 * 89.72435 * 21 19 18 23 23 F 1.35099 * 120.09598 * 0.02562 * 22 21 19 24 24 C 1.38217 * 119.80424 * 179.74986 * 22 21 19 25 25 C 1.38312 * 120.18918 * 0.53561 * 24 22 21 26 26 C 1.38299 * 120.38405 * 359.73923 * 25 24 22 27 27 C 1.38225 * 120.18959 * 359.97438 * 26 25 24 28 28 F 1.35104 * 120.09317 * 180.02562 * 27 26 25 29 29 C 1.46925 * 118.74182 * 53.60417 * 18 17 16 30 30 H 1.08996 * 109.47521 * 300.00029 * 1 2 3 31 31 H 1.08996 * 109.47534 * 60.00205 * 1 2 3 32 32 H 1.09005 * 109.47347 * 180.02562 * 1 2 3 33 33 H 0.96995 * 120.00290 * 265.27311 * 4 2 1 34 34 H 0.97005 * 119.99727 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46052 * 298.70183 * 15 13 2 36 36 H 1.09001 * 109.46515 * 58.67886 * 15 13 2 37 37 H 1.08996 * 109.50244 * 181.31326 * 16 15 13 38 38 H 1.09003 * 109.49424 * 301.37980 * 16 15 13 39 39 H 1.09004 * 109.58167 * 65.15222 * 17 16 15 40 40 H 1.08995 * 109.59058 * 185.58235 * 17 16 15 41 41 H 1.08005 * 119.90893 * 180.25132 * 24 22 21 42 42 H 1.08004 * 119.80371 * 179.76538 * 25 24 22 43 43 H 1.07999 * 119.90683 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.58911 * 186.60708 * 29 18 17 45 45 H 1.08999 * 109.58632 * 66.18003 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6123 -0.6619 -3.5089 8 7 2.7385 -0.0051 -4.6426 9 14 3.0578 -2.4741 -3.4246 10 1 1.8610 -3.2933 -3.7439 11 1 4.1333 -2.7655 -4.4062 12 1 3.5329 -2.8038 -2.0570 13 6 2.0400 -0.7211 1.2493 14 1 1.6778 -1.7492 1.2492 15 6 1.5301 -0.0002 2.4992 16 6 2.0125 -0.7397 3.7492 17 6 3.5441 -0.7368 3.7803 18 7 4.0438 -1.2969 2.5173 19 6 4.9186 -2.3221 2.5193 20 8 5.3244 -2.7772 1.4673 21 6 5.3841 -2.8922 3.7980 22 6 4.6829 -3.9453 4.3954 23 9 3.5763 -4.4447 3.8027 24 6 5.1290 -4.4769 5.5907 25 6 6.2586 -3.9635 6.2018 26 6 6.9544 -2.9189 5.6211 27 6 6.5258 -2.3792 4.4229 28 9 7.2073 -1.3590 3.8571 29 6 3.5719 -0.7180 1.2520 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2452 -1.6328 -1.1535 34 1 3.0618 -0.4625 -5.4346 35 1 1.9124 1.0205 2.5110 36 1 0.4403 0.0202 2.4876 37 1 1.6297 -0.2391 4.6386 38 1 1.6506 -1.7676 3.7261 39 1 3.9052 0.2853 3.8949 40 1 3.8939 -1.3458 4.6138 41 1 4.5913 -5.2926 6.0513 42 1 6.5994 -4.3812 7.1376 43 1 7.8357 -2.5242 6.1047 44 1 3.9400 -1.3147 0.4174 45 1 3.9353 0.3055 1.1605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568414332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:55 Heat of formation + Delta-G solvation = -84.690103 kcal Electronic energy + Delta-G solvation = -30440.314325 eV Core-core repulsion = 26094.070497 eV Total energy + Delta-G solvation = -4346.243829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.40484 -49.38770 -40.46927 -38.93608 -37.77266 -35.61455 -33.10125 -31.84698 -31.77853 -30.86366 -30.14054 -28.55461 -25.83756 -24.60485 -23.35936 -23.30419 -22.89720 -21.17991 -19.86915 -19.52110 -18.53784 -17.83623 -17.67263 -17.30454 -16.68086 -16.06640 -15.95938 -15.67912 -15.53811 -15.01996 -14.86052 -14.79978 -14.45780 -14.11043 -14.08255 -13.51834 -13.23325 -13.02929 -12.96190 -12.88836 -12.49665 -12.43388 -12.32898 -12.27146 -12.18944 -11.57867 -11.21993 -11.12708 -10.96142 -10.78218 -10.65793 -10.32978 -10.14423 -10.04559 -9.80855 -9.50456 -9.44626 -9.27792 -8.88651 -8.61282 -7.20443 -5.70387 -3.05657 0.30441 0.45710 2.36370 2.71418 2.91067 3.33053 3.47393 3.54851 3.57344 3.88458 3.99512 4.23644 4.33884 4.57585 4.62696 4.68305 4.81836 4.86974 5.08753 5.14959 5.23347 5.26832 5.33642 5.37231 5.46648 5.54275 5.58426 5.60094 5.63079 5.70867 5.82572 5.89999 6.03690 6.05822 6.14260 6.17598 6.30623 6.35947 6.39945 6.53447 6.59150 6.84552 7.03420 7.29610 8.01297 8.05322 8.48820 9.27383 10.00659 10.19840 11.47861 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.003667 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.495979 B = 7633.240091 C = 8375.998517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.186 3.814 3 H 0.057 0.943 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.935 5.935 9 Si 0.877 3.123 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.272 1.272 13 C -0.107 4.107 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.106 3.894 18 N -0.597 5.597 19 C 0.560 3.440 20 O -0.513 6.513 21 C -0.189 4.189 22 C 0.161 3.839 23 F -0.119 7.119 24 C -0.165 4.165 25 C -0.049 4.049 26 C -0.165 4.165 27 C 0.161 3.839 28 F -0.119 7.119 29 C 0.120 3.880 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.103 0.897 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 -5.326 30.097 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.075 0.925 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.583 5.583 9 Si 0.707 3.293 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.198 1.198 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.330 5.330 19 C 0.345 3.655 20 O -0.388 6.388 21 C -0.194 4.194 22 C 0.140 3.860 23 F -0.097 7.097 24 C -0.184 4.184 25 C -0.067 4.067 26 C -0.184 4.184 27 C 0.140 3.860 28 F -0.098 7.098 29 C -0.001 4.001 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.167 0.833 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.121 0.879 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.230 -5.350 29.260 30.044 hybrid contribution 0.221 -1.264 -0.319 1.322 sum 4.451 -6.614 28.941 30.019 Atomic orbital electron populations 1.22448 0.98707 1.00858 1.00461 1.20142 0.92059 0.95552 0.84669 0.92532 1.42837 1.79761 1.09443 1.07176 1.19034 1.36970 0.95535 0.85555 0.89208 1.24629 1.01303 0.97362 0.95577 1.69702 1.52761 1.35544 1.00259 0.86645 0.78084 0.86946 0.77601 1.21218 1.21749 1.19791 1.21825 0.94435 1.00663 0.95798 0.91154 1.21620 1.01284 0.99147 0.93140 1.21920 0.94401 1.01745 0.99062 1.21760 0.95114 0.99294 0.85485 1.48144 1.43286 1.33066 1.08466 1.17796 0.79727 0.80202 0.87790 1.90892 1.56174 1.59845 1.31846 1.20031 0.99059 1.01403 0.98935 1.17347 0.84121 0.92709 0.91778 1.91600 1.49247 1.85655 1.83205 1.21195 0.99341 1.02955 0.94914 1.20989 0.92717 0.93675 0.99318 1.21189 1.02922 0.99277 0.95005 1.17342 0.89988 0.86662 0.91982 1.91598 1.77859 1.55901 1.84394 1.21801 0.94112 0.99338 0.84812 0.93926 0.92334 0.93700 0.80589 0.93135 0.91510 0.90847 0.90667 0.91497 0.90826 0.90730 0.83289 0.83354 0.83277 0.87921 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.14 37.16 0.34 -2.49 16 2 C 0.19 3.50 2.47 -67.93 -0.17 3.33 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 4 N -0.75 -17.99 4.32 -53.43 -0.23 -18.22 16 5 C -0.24 -6.88 10.41 -15.06 -0.16 -7.04 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 8 N -0.93 -30.09 13.97 55.49 0.78 -29.32 16 9 Si 0.88 23.50 27.73 -169.99 -4.71 18.79 16 10 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 12 H -0.27 -7.17 6.52 56.52 0.37 -6.80 16 13 C -0.11 -1.69 1.97 -90.50 -0.18 -1.86 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 15 C -0.11 -1.33 4.85 -26.69 -0.13 -1.46 16 16 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 17 C 0.11 1.14 6.34 -3.71 -0.02 1.11 16 18 N -0.60 -8.95 2.97 -173.99 -0.52 -9.47 16 19 C 0.56 9.45 6.43 -12.47 -0.08 9.37 16 20 O -0.51 -11.12 16.52 5.28 0.09 -11.04 16 21 C -0.19 -2.42 3.65 -104.86 -0.38 -2.80 16 22 C 0.16 1.74 7.13 -38.97 -0.28 1.47 16 23 F -0.12 -1.53 16.83 2.25 0.04 -1.49 16 24 C -0.17 -1.13 10.01 -39.56 -0.40 -1.53 16 25 C -0.05 -0.25 10.03 -39.53 -0.40 -0.64 16 26 C -0.17 -1.11 10.01 -39.56 -0.40 -1.51 16 27 C 0.16 1.72 7.29 -38.97 -0.28 1.44 16 28 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16 29 C 0.12 2.07 5.47 -3.71 -0.02 2.05 16 30 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.36 8.87 5.50 -40.82 -0.22 8.65 16 34 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.69 6.21 -51.93 -0.32 0.37 16 41 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.15 0.24 8.06 -52.48 -0.42 -0.19 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.10 2.20 6.53 -51.93 -0.34 1.86 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -35.93 371.46 -7.94 -43.88 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.21 Total: 4.63 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.81 Total: -1.91 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.03 Total: -57.01 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.71 Total: 18.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.93 -7.94 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.811 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds