Wall clock time and date at job start Tue Mar 31 2020 20:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46954 * 2 1 4 4 N 1.46494 * 109.46915 * 239.99456 * 2 1 3 5 5 C 1.36945 * 119.99612 * 85.00420 * 4 2 1 6 6 H 1.07999 * 120.00077 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99637 * 179.97438 * 5 4 2 8 8 N 1.31624 * 119.99539 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00216 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46712 * 90.00052 * 9 7 5 11 11 H 1.48499 * 109.46916 * 209.99467 * 9 7 5 12 12 H 1.48492 * 109.46909 * 330.00070 * 9 7 5 13 13 C 1.52999 * 109.46922 * 119.99510 * 2 1 3 14 14 H 1.09002 * 109.49459 * 60.06591 * 13 2 1 15 15 C 1.53033 * 109.50043 * 300.00449 * 13 2 1 16 16 C 1.53042 * 109.54044 * 178.68561 * 15 13 2 17 17 C 1.53195 * 109.31590 * 61.36022 * 16 15 13 18 18 N 1.46924 * 108.77440 * 305.37077 * 17 16 15 19 19 C 1.34772 * 120.62868 * 233.58667 * 18 17 16 20 20 O 1.21595 * 120.00171 * 179.97438 * 19 18 17 21 21 C 1.47541 * 120.00411 * 359.97438 * 19 18 17 22 22 C 1.39906 * 120.18504 * 89.72435 * 21 19 18 23 23 F 1.35099 * 120.09598 * 0.02562 * 22 21 19 24 24 C 1.38217 * 119.80424 * 179.74986 * 22 21 19 25 25 C 1.38312 * 120.18918 * 0.53561 * 24 22 21 26 26 C 1.38299 * 120.38405 * 359.73923 * 25 24 22 27 27 C 1.38225 * 120.18959 * 359.97438 * 26 25 24 28 28 F 1.35104 * 120.09317 * 180.02562 * 27 26 25 29 29 C 1.46925 * 118.74182 * 53.60417 * 18 17 16 30 30 H 1.08996 * 109.47521 * 300.00029 * 1 2 3 31 31 H 1.08996 * 109.47534 * 60.00205 * 1 2 3 32 32 H 1.09005 * 109.47347 * 180.02562 * 1 2 3 33 33 H 0.96995 * 120.00290 * 265.27311 * 4 2 1 34 34 H 0.97005 * 119.99727 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.46052 * 298.70183 * 15 13 2 36 36 H 1.09001 * 109.46515 * 58.67886 * 15 13 2 37 37 H 1.08996 * 109.50244 * 181.31326 * 16 15 13 38 38 H 1.09003 * 109.49424 * 301.37980 * 16 15 13 39 39 H 1.09004 * 109.58167 * 65.15222 * 17 16 15 40 40 H 1.08995 * 109.59058 * 185.58235 * 17 16 15 41 41 H 1.08005 * 119.90893 * 180.25132 * 24 22 21 42 42 H 1.08004 * 119.80371 * 179.76538 * 25 24 22 43 43 H 1.07999 * 119.90683 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.58911 * 186.60708 * 29 18 17 45 45 H 1.08999 * 109.58632 * 66.18003 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6123 -0.6619 -3.5089 8 7 2.7385 -0.0051 -4.6426 9 14 3.0578 -2.4741 -3.4246 10 1 1.8610 -3.2933 -3.7439 11 1 4.1333 -2.7655 -4.4062 12 1 3.5329 -2.8038 -2.0570 13 6 2.0400 -0.7211 1.2493 14 1 1.6778 -1.7492 1.2492 15 6 1.5301 -0.0002 2.4992 16 6 2.0125 -0.7397 3.7492 17 6 3.5441 -0.7368 3.7803 18 7 4.0438 -1.2969 2.5173 19 6 4.9186 -2.3221 2.5193 20 8 5.3244 -2.7772 1.4673 21 6 5.3841 -2.8922 3.7980 22 6 4.6829 -3.9453 4.3954 23 9 3.5763 -4.4447 3.8027 24 6 5.1290 -4.4769 5.5907 25 6 6.2586 -3.9635 6.2018 26 6 6.9544 -2.9189 5.6211 27 6 6.5258 -2.3792 4.4229 28 9 7.2073 -1.3590 3.8571 29 6 3.5719 -0.7180 1.2520 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2452 -1.6328 -1.1535 34 1 3.0618 -0.4625 -5.4346 35 1 1.9124 1.0205 2.5110 36 1 0.4403 0.0202 2.4876 37 1 1.6297 -0.2391 4.6386 38 1 1.6506 -1.7676 3.7261 39 1 3.9052 0.2853 3.8949 40 1 3.8939 -1.3458 4.6138 41 1 4.5913 -5.2926 6.0513 42 1 6.5994 -4.3812 7.1376 43 1 7.8357 -2.5242 6.1047 44 1 3.9400 -1.3147 0.4174 45 1 3.9353 0.3055 1.1605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568414332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:54 Heat of formation + Delta-G solvation = -108.548896 kcal Electronic energy + Delta-G solvation = -30441.348920 eV Core-core repulsion = 26094.070497 eV Total energy + Delta-G solvation = -4347.278424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.23890 -50.22050 -41.61847 -39.77649 -39.01061 -37.17923 -34.78344 -33.42929 -32.62849 -31.74401 -31.47847 -30.06122 -26.93469 -26.01547 -24.73673 -24.14092 -23.96568 -22.41137 -21.42484 -20.60095 -19.66305 -19.30403 -18.61328 -18.47269 -17.71064 -16.95677 -16.83818 -16.81972 -16.53167 -16.29429 -16.20549 -15.91764 -15.58479 -15.49165 -15.25008 -14.95448 -14.51299 -14.38757 -14.30096 -14.07845 -13.85222 -13.64629 -13.31368 -13.13543 -13.02455 -12.94629 -12.90507 -12.65365 -12.45328 -12.27509 -12.01241 -11.89542 -11.78685 -11.53399 -11.37892 -11.19972 -11.03238 -10.19184 -9.92177 -9.86212 -9.33896 -8.07350 -5.37417 -0.37379 -0.16255 1.14578 1.27549 1.32893 1.38651 1.70966 2.21633 2.41166 2.61682 3.08311 3.23605 3.25349 3.46406 3.67850 3.70258 3.71176 3.83200 3.96339 4.00212 4.10074 4.16076 4.30568 4.48016 4.54281 4.55441 4.60901 4.65026 4.76713 4.78897 4.82457 4.87410 4.95016 4.96606 4.98730 5.07605 5.09342 5.20329 5.28401 5.33482 5.44899 5.57811 5.61097 5.75218 6.11611 6.18621 6.78505 7.04000 7.82333 7.98496 9.14549 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.003667 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.495979 B = 7633.240091 C = 8375.998517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.177 3.823 3 H 0.052 0.948 4 N -0.756 5.756 5 C -0.216 4.216 6 H 0.067 0.933 7 C -0.057 4.057 8 N -0.980 5.980 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.274 1.274 13 C -0.093 4.093 14 H 0.057 0.943 15 C -0.109 4.109 16 C -0.124 4.124 17 C 0.099 3.901 18 N -0.594 5.594 19 C 0.550 3.450 20 O -0.583 6.583 21 C -0.216 4.216 22 C 0.136 3.864 23 F -0.140 7.140 24 C -0.147 4.147 25 C -0.024 4.024 26 C -0.146 4.146 27 C 0.136 3.864 28 F -0.140 7.140 29 C 0.122 3.878 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.358 0.642 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.181 0.819 42 H 0.201 0.799 43 H 0.181 0.819 44 H 0.051 0.949 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -6.297 35.858 36.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 H 0.070 0.930 4 N -0.398 5.398 5 C -0.347 4.347 6 H 0.085 0.915 7 C -0.248 4.248 8 N -0.632 5.632 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.200 1.200 13 C -0.113 4.113 14 H 0.076 0.924 15 C -0.146 4.146 16 C -0.162 4.162 17 C -0.022 4.022 18 N -0.324 5.324 19 C 0.338 3.662 20 O -0.463 6.463 21 C -0.221 4.221 22 C 0.116 3.884 23 F -0.118 7.118 24 C -0.165 4.165 25 C -0.041 4.041 26 C -0.165 4.165 27 C 0.116 3.884 28 F -0.119 7.119 29 C 0.000 4.000 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.190 0.810 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.198 0.802 42 H 0.218 0.782 43 H 0.198 0.802 44 H 0.070 0.930 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.874 -6.297 35.122 35.892 hybrid contribution 0.349 -0.896 -1.940 2.166 sum 4.222 -7.193 33.182 34.214 Atomic orbital electron populations 1.22297 0.96538 1.01162 1.01384 1.20463 0.93462 0.95152 0.84032 0.93008 1.42959 1.80002 1.09337 1.07538 1.19054 1.34096 0.94624 0.86919 0.91522 1.25256 1.02871 1.01080 0.95609 1.69837 1.55231 1.37108 1.01002 0.85659 0.77798 0.82774 0.77010 1.20092 1.22319 1.20024 1.21675 0.93006 1.00148 0.96495 0.92420 1.21631 1.02235 0.99313 0.91458 1.21909 0.93251 1.01535 0.99533 1.22130 0.96027 1.00212 0.83813 1.48278 1.42568 1.32469 1.09134 1.18598 0.79020 0.79880 0.88742 1.90830 1.58672 1.62076 1.34736 1.19831 1.01074 1.03346 0.97799 1.17726 0.84182 0.93123 0.93385 1.91543 1.50397 1.85959 1.83942 1.21634 0.99468 1.02656 0.92752 1.21617 0.90712 0.91680 1.00090 1.21632 1.03365 0.98634 0.92842 1.17728 0.89874 0.87225 0.93591 1.91542 1.78235 1.56985 1.85088 1.21537 0.95342 0.98225 0.84897 0.89614 0.94756 0.93686 0.80992 0.93446 0.90310 0.89100 0.86606 0.92259 0.89223 0.88864 0.80200 0.78221 0.80155 0.93001 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.14 71.98 0.66 -4.46 16 2 C 0.18 6.71 2.47 44.99 0.11 6.82 16 3 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 4 N -0.76 -37.58 4.32 -322.95 -1.40 -38.97 16 5 C -0.22 -12.81 10.41 84.03 0.87 -11.93 16 6 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 7 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 8 N -0.98 -65.67 13.97 21.65 0.30 -65.37 16 9 Si 0.94 51.04 27.73 68.60 1.90 52.94 16 10 H -0.27 -14.34 7.11 99.48 0.71 -13.64 16 11 H -0.30 -16.26 7.11 99.48 0.71 -15.56 16 12 H -0.27 -14.86 6.52 99.48 0.65 -14.21 16 13 C -0.09 -2.93 1.97 -10.72 -0.02 -2.95 16 14 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 15 C -0.11 -2.23 4.85 30.62 0.15 -2.08 16 16 C -0.12 -2.03 6.08 30.67 0.19 -1.84 16 17 C 0.10 1.94 6.34 86.36 0.55 2.49 16 18 N -0.59 -18.36 2.97 -822.65 -2.44 -20.81 16 19 C 0.55 19.74 6.43 86.70 0.56 20.30 16 20 O -0.58 -27.71 16.52 -4.02 -0.07 -27.78 16 21 C -0.22 -5.52 3.65 -20.02 -0.07 -5.60 16 22 C 0.14 2.78 7.13 22.67 0.16 2.94 16 23 F -0.14 -3.60 16.83 44.97 0.76 -2.85 16 24 C -0.15 -1.38 10.01 22.28 0.22 -1.16 16 25 C -0.02 -0.10 10.03 22.30 0.22 0.12 16 26 C -0.15 -1.36 10.01 22.28 0.22 -1.14 16 27 C 0.14 2.76 7.29 22.67 0.17 2.93 16 28 F -0.14 -3.57 16.83 44.97 0.76 -2.82 16 29 C 0.12 4.45 5.47 86.36 0.47 4.92 16 30 H 0.09 2.10 6.40 -2.39 -0.02 2.09 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.36 18.28 5.50 -92.71 -0.51 17.77 16 34 H 0.26 16.48 8.31 -92.70 -0.77 15.71 16 35 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.09 1.61 6.36 -2.39 -0.02 1.59 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.09 1.52 6.21 -2.39 -0.01 1.51 16 41 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 42 H 0.20 -1.03 8.06 -2.91 -0.02 -1.06 16 43 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.05 2.42 6.53 -2.39 -0.02 2.40 16 45 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -88.30 371.46 5.19 -83.11 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.45 Total: 16.26 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.93 Total: 6.28 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -3.54 Total: -125.15 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.07 Total: -27.78 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.51 Total: -5.66 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 1.90 Total: 52.94 kcal Total: -88.30 5.19 -83.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.434 kcal (2) G-P(sol) polarization free energy of solvation -88.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds