Wall clock time and date at job start Tue Mar 31 2020 20:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.36932 * 120.00140 * 84.99833 * 4 2 1 6 6 H 1.07994 * 120.00447 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47053 * 60.00202 * 9 7 5 11 11 H 1.48505 * 109.46763 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47098 * 299.99805 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 H 1.09002 * 109.49501 * 180.02562 * 13 2 1 15 15 C 1.53044 * 109.49922 * 300.06752 * 13 2 1 16 16 C 1.53037 * 109.53864 * 181.28441 * 15 13 2 17 17 C 1.53198 * 109.33913 * 298.68457 * 16 15 13 18 18 N 1.46919 * 108.77562 * 54.61934 * 17 16 15 19 19 C 1.34776 * 120.62990 * 126.41832 * 18 17 16 20 20 O 1.21592 * 119.99741 * 179.97438 * 19 18 17 21 21 C 1.47540 * 120.00190 * 359.97147 * 19 18 17 22 22 C 1.39901 * 120.18677 * 89.72740 * 21 19 18 23 23 F 1.35105 * 120.09664 * 359.97438 * 22 21 19 24 24 C 1.38223 * 119.80560 * 179.74823 * 22 21 19 25 25 C 1.38307 * 120.18876 * 0.50451 * 24 22 21 26 26 C 1.38303 * 120.38121 * 359.77573 * 25 24 22 27 27 C 1.38216 * 120.19206 * 359.96767 * 26 25 24 28 28 F 1.35104 * 120.09532 * 179.97438 * 27 26 25 29 29 C 1.46930 * 118.73850 * 306.38886 * 18 17 16 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 34 34 H 0.97001 * 119.99679 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.45599 * 301.33677 * 15 13 2 36 36 H 1.09003 * 109.45988 * 61.29414 * 15 13 2 37 37 H 1.08997 * 109.49508 * 178.71957 * 16 15 13 38 38 H 1.09003 * 109.49619 * 58.64973 * 16 15 13 39 39 H 1.09005 * 109.58347 * 294.82995 * 17 16 15 40 40 H 1.08994 * 109.70123 * 174.48035 * 17 16 15 41 41 H 1.08001 * 119.90661 * 180.28221 * 24 22 21 42 42 H 1.07997 * 119.80741 * 179.74184 * 25 24 22 43 43 H 1.08004 * 119.89900 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.58867 * 293.82300 * 29 18 17 45 45 H 1.09004 * 109.58580 * 173.39557 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0073 -2.3757 6 1 1.8920 1.0405 -2.4243 7 6 2.6114 -0.6617 -3.5093 8 7 2.9245 -1.9388 -3.4503 9 14 2.7892 0.2701 -5.1185 10 1 3.7445 1.3926 -4.9377 11 1 3.2983 -0.6483 -6.1686 12 1 1.4666 0.8068 -5.5284 13 6 2.0401 -0.7213 1.2492 14 1 3.1301 -0.7211 1.2498 15 6 1.5289 -0.0013 2.4992 16 6 2.0647 -0.7031 3.7492 17 6 1.5534 -2.1470 3.7788 18 7 1.9169 -2.8034 2.5157 19 6 2.5934 -3.9691 2.5175 20 8 2.8880 -4.5026 1.4653 21 6 2.9766 -4.5977 3.7961 22 6 2.1110 -5.5001 4.4236 23 9 0.9197 -5.7990 3.8608 24 6 2.4802 -6.0884 5.6186 25 6 3.6968 -5.7794 6.1993 26 6 4.5560 -4.8840 5.5887 27 6 4.2050 -4.2905 4.3908 28 9 5.0456 -3.4157 3.7963 29 6 1.5284 -2.1652 1.2505 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2479 -2.3959 -4.2423 35 1 1.8716 1.0333 2.4880 36 1 0.4391 -0.0225 2.5104 37 1 1.7189 -0.1764 4.6386 38 1 3.1545 -0.7035 3.7272 39 1 0.4693 -2.1484 3.8927 40 1 2.0090 -2.6811 4.6126 41 1 1.8151 -6.7887 6.1021 42 1 3.9772 -6.2395 7.1352 43 1 5.5040 -4.6480 6.0492 44 1 0.4423 -2.1682 1.1582 45 1 1.9697 -2.7100 0.4159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568414333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:59 Heat of formation + Delta-G solvation = -85.167318 kcal Electronic energy + Delta-G solvation = -30358.069022 eV Core-core repulsion = 26011.804500 eV Total energy + Delta-G solvation = -4346.264522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.34069 -49.29432 -40.39875 -38.88680 -37.69926 -35.43284 -33.02960 -31.86767 -31.65589 -30.79309 -29.69715 -27.85092 -25.87839 -24.58597 -23.66259 -23.23216 -23.15714 -21.26023 -19.96925 -18.66529 -18.46112 -17.67991 -17.59430 -17.02171 -16.56463 -15.99116 -15.86062 -15.59825 -15.48427 -14.86474 -14.74549 -14.71099 -14.54307 -14.18884 -13.75178 -13.63783 -13.16879 -13.00802 -12.96741 -12.79436 -12.42773 -12.40436 -12.25467 -12.20232 -11.86696 -11.52374 -11.15510 -10.96238 -10.80105 -10.61270 -10.42995 -10.24837 -10.20299 -10.02442 -9.77122 -9.49691 -9.36243 -9.20699 -8.83870 -8.48592 -6.88443 -5.66507 -2.96520 0.37816 0.52755 2.46912 2.79133 2.99461 3.40711 3.49253 3.53183 3.55012 3.95712 4.07586 4.30655 4.41258 4.63272 4.64395 4.73540 4.90380 4.99578 5.18615 5.24713 5.33577 5.35699 5.41503 5.45815 5.53769 5.64019 5.66555 5.66648 5.78746 5.86060 5.88343 5.98103 6.09165 6.15180 6.24379 6.28319 6.38262 6.41524 6.58502 6.66344 6.78478 6.92731 7.16386 7.39351 7.76893 8.12127 8.50878 9.61522 10.19670 10.53620 11.55464 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003158 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.627885 B = 8863.808856 C = 9359.507714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.050 0.950 4 N -0.726 5.726 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.104 4.104 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.597 5.597 19 C 0.559 3.441 20 O -0.508 6.508 21 C -0.188 4.188 22 C 0.160 3.840 23 F -0.120 7.120 24 C -0.166 4.166 25 C -0.050 4.050 26 C -0.165 4.165 27 C 0.162 3.838 28 F -0.118 7.118 29 C 0.116 3.884 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.074 0.926 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -4.979 27.123 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.068 0.932 4 N -0.368 5.368 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.124 4.124 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.329 5.329 19 C 0.344 3.656 20 O -0.382 6.382 21 C -0.193 4.193 22 C 0.139 3.861 23 F -0.098 7.098 24 C -0.185 4.185 25 C -0.068 4.068 26 C -0.184 4.184 27 C 0.141 3.859 28 F -0.096 7.096 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.092 0.908 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.375 -5.131 26.315 26.846 hybrid contribution 0.113 0.270 -1.134 1.171 sum -1.262 -4.861 25.181 25.677 Atomic orbital electron populations 1.22578 0.99522 1.00862 0.99980 1.20166 0.91828 0.95284 0.85699 0.93248 1.42517 1.78145 1.10827 1.05299 1.19163 1.36866 0.93797 0.87376 0.91306 1.24757 1.02200 0.95944 0.98004 1.69670 1.50529 1.08575 1.28921 0.86302 0.77676 0.78582 0.83800 1.21364 1.21750 1.21363 1.21789 1.01085 0.94040 0.95462 0.90747 1.21624 1.00927 0.99260 0.93393 1.21916 1.01557 0.94679 0.99001 1.21733 1.00386 0.93879 0.85563 1.48115 1.55124 1.21351 1.08329 1.17791 0.78722 0.81340 0.87788 1.90911 1.53275 1.62346 1.31693 1.20049 0.96365 1.03959 0.98943 1.17340 0.81366 0.95313 0.92043 1.91591 1.42365 1.91335 1.84536 1.21175 0.99173 1.03009 0.95120 1.20976 0.91816 0.94666 0.99317 1.21192 1.02518 0.99845 0.94883 1.17356 0.86860 0.89958 0.91686 1.91614 1.69075 1.65786 1.83096 1.21914 1.00087 0.93433 0.85073 0.93327 0.94229 0.92857 0.78035 0.93448 0.91450 0.91317 0.90811 0.91447 0.91007 0.90771 0.83353 0.83411 0.83309 0.90767 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.79 37.16 0.33 -2.69 16 2 C 0.18 3.60 2.72 -67.93 -0.18 3.41 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 N -0.73 -18.69 5.04 -53.43 -0.27 -18.96 16 5 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -29.32 13.06 55.49 0.72 -28.59 16 9 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C -0.10 -1.75 2.33 -90.50 -0.21 -1.96 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.11 -1.43 4.78 -26.69 -0.13 -1.56 16 16 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 17 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 18 N -0.60 -9.29 2.97 -173.99 -0.52 -9.81 16 19 C 0.56 9.77 6.43 -12.47 -0.08 9.69 16 20 O -0.51 -11.36 16.52 5.28 0.09 -11.27 16 21 C -0.19 -2.51 3.64 -104.86 -0.38 -2.89 16 22 C 0.16 1.78 7.29 -38.97 -0.28 1.49 16 23 F -0.12 -1.54 16.83 2.25 0.04 -1.50 16 24 C -0.17 -1.18 10.01 -39.56 -0.40 -1.58 16 25 C -0.05 -0.27 10.03 -39.53 -0.40 -0.67 16 26 C -0.17 -1.22 10.01 -39.57 -0.40 -1.62 16 27 C 0.16 1.86 7.15 -38.97 -0.28 1.59 16 28 F -0.12 -1.62 16.83 2.25 0.04 -1.58 16 29 C 0.12 2.06 5.21 -3.71 -0.02 2.04 16 30 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 31 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 10.74 6.17 -40.82 -0.25 10.48 16 34 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.81 6.50 -51.93 -0.34 0.47 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.73 6.22 -51.93 -0.32 0.41 16 41 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.15 0.30 8.06 -52.49 -0.42 -0.13 16 43 H 0.15 0.74 8.06 -52.48 -0.42 0.31 16 44 H 0.07 1.25 6.18 -51.93 -0.32 0.93 16 45 H 0.10 2.27 5.59 -51.93 -0.29 1.98 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -35.32 369.04 -8.18 -43.50 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.96 Total: 7.24 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.86 Total: -2.62 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.06 Total: -57.36 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.32 -8.18 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.671 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds