Wall clock time and date at job start Tue Mar 31 2020 20:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.36932 * 120.00140 * 84.99833 * 4 2 1 6 6 H 1.07994 * 120.00447 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47053 * 60.00202 * 9 7 5 11 11 H 1.48505 * 109.46763 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47098 * 299.99805 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 H 1.09002 * 109.49501 * 180.02562 * 13 2 1 15 15 C 1.53044 * 109.49922 * 300.06752 * 13 2 1 16 16 C 1.53037 * 109.53864 * 181.28441 * 15 13 2 17 17 C 1.53198 * 109.33913 * 298.68457 * 16 15 13 18 18 N 1.46919 * 108.77562 * 54.61934 * 17 16 15 19 19 C 1.34776 * 120.62990 * 126.41832 * 18 17 16 20 20 O 1.21592 * 119.99741 * 179.97438 * 19 18 17 21 21 C 1.47540 * 120.00190 * 359.97147 * 19 18 17 22 22 C 1.39901 * 120.18677 * 89.72740 * 21 19 18 23 23 F 1.35105 * 120.09664 * 359.97438 * 22 21 19 24 24 C 1.38223 * 119.80560 * 179.74823 * 22 21 19 25 25 C 1.38307 * 120.18876 * 0.50451 * 24 22 21 26 26 C 1.38303 * 120.38121 * 359.77573 * 25 24 22 27 27 C 1.38216 * 120.19206 * 359.96767 * 26 25 24 28 28 F 1.35104 * 120.09532 * 179.97438 * 27 26 25 29 29 C 1.46930 * 118.73850 * 306.38886 * 18 17 16 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 34 34 H 0.97001 * 119.99679 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.45599 * 301.33677 * 15 13 2 36 36 H 1.09003 * 109.45988 * 61.29414 * 15 13 2 37 37 H 1.08997 * 109.49508 * 178.71957 * 16 15 13 38 38 H 1.09003 * 109.49619 * 58.64973 * 16 15 13 39 39 H 1.09005 * 109.58347 * 294.82995 * 17 16 15 40 40 H 1.08994 * 109.70123 * 174.48035 * 17 16 15 41 41 H 1.08001 * 119.90661 * 180.28221 * 24 22 21 42 42 H 1.07997 * 119.80741 * 179.74184 * 25 24 22 43 43 H 1.08004 * 119.89900 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.58867 * 293.82300 * 29 18 17 45 45 H 1.09004 * 109.58580 * 173.39557 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0073 -2.3757 6 1 1.8920 1.0405 -2.4243 7 6 2.6114 -0.6617 -3.5093 8 7 2.9245 -1.9388 -3.4503 9 14 2.7892 0.2701 -5.1185 10 1 3.7445 1.3926 -4.9377 11 1 3.2983 -0.6483 -6.1686 12 1 1.4666 0.8068 -5.5284 13 6 2.0401 -0.7213 1.2492 14 1 3.1301 -0.7211 1.2498 15 6 1.5289 -0.0013 2.4992 16 6 2.0647 -0.7031 3.7492 17 6 1.5534 -2.1470 3.7788 18 7 1.9169 -2.8034 2.5157 19 6 2.5934 -3.9691 2.5175 20 8 2.8880 -4.5026 1.4653 21 6 2.9766 -4.5977 3.7961 22 6 2.1110 -5.5001 4.4236 23 9 0.9197 -5.7990 3.8608 24 6 2.4802 -6.0884 5.6186 25 6 3.6968 -5.7794 6.1993 26 6 4.5560 -4.8840 5.5887 27 6 4.2050 -4.2905 4.3908 28 9 5.0456 -3.4157 3.7963 29 6 1.5284 -2.1652 1.2505 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2479 -2.3959 -4.2423 35 1 1.8716 1.0333 2.4880 36 1 0.4391 -0.0225 2.5104 37 1 1.7189 -0.1764 4.6386 38 1 3.1545 -0.7035 3.7272 39 1 0.4693 -2.1484 3.8927 40 1 2.0090 -2.6811 4.6126 41 1 1.8151 -6.7887 6.1021 42 1 3.9772 -6.2395 7.1352 43 1 5.5040 -4.6480 6.0492 44 1 0.4423 -2.1682 1.1582 45 1 1.9697 -2.7100 0.4159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568414333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:58 Heat of formation + Delta-G solvation = -108.698167 kcal Electronic energy + Delta-G solvation = -30359.089396 eV Core-core repulsion = 26011.804500 eV Total energy + Delta-G solvation = -4347.284896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.22190 -50.20166 -41.62033 -39.79713 -38.99383 -37.02777 -34.76023 -33.33997 -32.55175 -31.46277 -31.38054 -29.46015 -27.01708 -26.30857 -24.84967 -24.56080 -23.94748 -22.50444 -21.20141 -20.02432 -19.43849 -19.19253 -18.56511 -18.44766 -17.68258 -16.95015 -16.81337 -16.74348 -16.51493 -16.36998 -16.01428 -15.81668 -15.54824 -15.50740 -15.35688 -15.20134 -14.46081 -14.32691 -14.09848 -13.94814 -13.83938 -13.44409 -13.14405 -13.05422 -12.94895 -12.92470 -12.82222 -12.69642 -12.39032 -12.19086 -11.97483 -11.84766 -11.82630 -11.50188 -11.27332 -11.15992 -10.94485 -10.17237 -9.90583 -9.79845 -9.03861 -7.93870 -5.24245 -0.35490 -0.14650 1.18415 1.42559 1.47196 1.53354 1.74183 2.23281 2.54511 2.63801 3.10774 3.25431 3.38272 3.64932 3.71069 3.72524 3.80027 3.85585 3.98505 4.08432 4.11597 4.20139 4.31248 4.46783 4.56942 4.57838 4.62904 4.65112 4.74645 4.78923 4.83894 4.89125 4.97845 5.04735 5.05735 5.08979 5.10549 5.19445 5.30555 5.35940 5.42536 5.50946 5.62865 5.64958 6.14636 6.26476 6.82842 7.31053 8.09260 8.30848 9.29494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003158 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.627885 B = 8863.808856 C = 9359.507714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.050 0.950 4 N -0.743 5.743 5 C -0.238 4.238 6 H 0.080 0.920 7 C -0.084 4.084 8 N -0.975 5.975 9 Si 0.976 3.024 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.275 1.275 13 C -0.091 4.091 14 H 0.042 0.958 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.100 3.900 18 N -0.594 5.594 19 C 0.548 3.452 20 O -0.581 6.581 21 C -0.215 4.215 22 C 0.137 3.863 23 F -0.139 7.139 24 C -0.145 4.145 25 C -0.023 4.023 26 C -0.147 4.147 27 C 0.133 3.867 28 F -0.142 7.142 29 C 0.123 3.877 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.183 0.817 42 H 0.202 0.798 43 H 0.180 0.820 44 H 0.084 0.916 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -4.063 31.915 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.068 0.932 4 N -0.384 5.384 5 C -0.370 4.370 6 H 0.098 0.902 7 C -0.275 4.275 8 N -0.626 5.626 9 Si 0.805 3.195 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.200 1.200 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.145 4.145 16 C -0.164 4.164 17 C -0.021 4.021 18 N -0.325 5.325 19 C 0.336 3.664 20 O -0.461 6.461 21 C -0.220 4.220 22 C 0.117 3.883 23 F -0.117 7.117 24 C -0.164 4.164 25 C -0.041 4.041 26 C -0.165 4.165 27 C 0.113 3.887 28 F -0.121 7.121 29 C 0.001 3.999 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.200 0.800 42 H 0.219 0.781 43 H 0.197 0.803 44 H 0.102 0.898 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.222 -4.134 31.195 31.546 hybrid contribution 0.362 -0.036 -2.454 2.481 sum -1.860 -4.170 28.741 29.101 Atomic orbital electron populations 1.22395 0.97117 1.00791 1.01307 1.20477 0.93370 0.94911 0.84829 0.93176 1.42823 1.78570 1.10325 1.06678 1.19641 1.34791 0.94259 0.88288 0.90212 1.25668 1.03143 0.96849 1.01876 1.69887 1.52746 1.10570 1.29384 0.85166 0.78092 0.77168 0.79073 1.20210 1.22557 1.20050 1.21614 0.99054 0.93712 0.96713 0.93981 1.21622 1.01974 0.99429 0.91477 1.21912 1.00708 0.94131 0.99603 1.22120 1.01937 0.94202 0.83820 1.48267 1.54131 1.20988 1.09086 1.18624 0.77677 0.81350 0.88761 1.90852 1.56184 1.64368 1.34731 1.19843 0.98339 1.06068 0.97747 1.17709 0.80859 0.96121 0.93614 1.91539 1.43419 1.91569 1.85206 1.21638 1.00071 1.01782 0.92870 1.21620 0.89921 0.92438 1.00104 1.21628 1.03789 0.98482 0.92636 1.17780 0.86280 0.91183 0.93435 1.91548 1.69693 1.66907 1.83922 1.21606 0.99958 0.93481 0.84905 0.94094 0.89699 0.94595 0.79968 0.94302 0.90027 0.89375 0.86432 0.92876 0.88801 0.88908 0.79991 0.78123 0.80283 0.89843 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 8.79 71.98 0.63 -4.85 16 2 C 0.17 7.04 2.72 44.99 0.12 7.16 16 3 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 4 N -0.74 -40.55 5.04 -322.94 -1.63 -42.18 16 5 C -0.24 -14.00 9.93 84.03 0.83 -13.17 16 6 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 7 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 8 N -0.97 -65.24 13.06 21.65 0.28 -64.95 16 9 Si 0.98 48.98 29.55 68.60 2.03 51.01 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 13 C -0.09 -3.19 2.33 -10.72 -0.02 -3.22 16 14 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.11 -2.46 4.78 30.62 0.15 -2.32 16 16 C -0.13 -2.35 6.08 30.67 0.19 -2.17 16 17 C 0.10 2.12 6.34 86.37 0.55 2.67 16 18 N -0.59 -19.60 2.97 -822.64 -2.44 -22.05 16 19 C 0.55 20.97 6.43 86.70 0.56 21.53 16 20 O -0.58 -29.36 16.52 -4.01 -0.07 -29.43 16 21 C -0.22 -5.92 3.64 -20.02 -0.07 -5.99 16 22 C 0.14 2.94 7.29 22.67 0.17 3.11 16 23 F -0.14 -3.63 16.83 44.97 0.76 -2.87 16 24 C -0.15 -1.48 10.01 22.28 0.22 -1.26 16 25 C -0.02 -0.13 10.03 22.30 0.22 0.10 16 26 C -0.15 -1.64 10.01 22.28 0.22 -1.41 16 27 C 0.13 3.03 7.15 22.67 0.16 3.19 16 28 F -0.14 -4.13 16.83 44.97 0.76 -3.37 16 29 C 0.12 4.71 5.21 86.36 0.45 5.16 16 30 H 0.04 1.48 6.32 -2.39 -0.02 1.47 16 31 H 0.08 2.20 6.46 -2.39 -0.02 2.18 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.37 22.42 6.17 -92.70 -0.57 21.85 16 34 H 0.25 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 1.73 6.50 -2.39 -0.02 1.71 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.09 1.67 6.22 -2.39 -0.01 1.65 16 41 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 42 H 0.20 -0.85 8.06 -2.91 -0.02 -0.88 16 43 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.08 2.97 6.18 -2.39 -0.01 2.95 16 45 H 0.05 2.32 5.59 -2.39 -0.01 2.31 16 Total: -1.00 -89.03 369.04 4.99 -84.04 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.46 Total: 25.96 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.84 Total: 3.85 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -3.79 Total: -129.18 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.07 Total: -29.43 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.51 Total: -6.25 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -89.03 4.99 -84.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568414333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.656 kcal (2) G-P(sol) polarization free energy of solvation -89.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds