Wall clock time and date at job start Tue Mar 31 2020 20:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47362 * 2 1 4 4 C 1.50703 * 109.47131 * 239.99441 * 2 1 3 5 5 N 1.31797 * 119.12345 * 286.30125 * 4 2 1 6 6 C 1.32328 * 120.81617 * 179.75988 * 5 4 2 7 7 C 1.38599 * 119.10726 * 0.50367 * 6 5 4 8 8 C 1.38598 * 118.39779 * 359.75178 * 7 6 5 9 9 N 1.31795 * 119.12246 * 106.57075 * 4 2 1 10 10 N 1.46897 * 109.46945 * 120.00030 * 2 1 3 11 11 C 1.46913 * 110.99834 * 302.16617 * 10 2 1 12 12 C 1.46897 * 111.00345 * 178.21710 * 10 2 1 13 13 C 1.52999 * 109.47283 * 189.99683 * 12 10 2 14 14 N 1.46500 * 109.46861 * 179.97438 * 13 12 10 15 15 C 1.46500 * 120.00084 * 90.00221 * 14 13 12 16 16 C 1.34782 * 120.00039 * 269.99567 * 14 13 12 17 17 O 1.21278 * 119.99798 * 0.02562 * 16 14 13 18 18 C 1.50700 * 119.99842 * 180.02562 * 16 14 13 19 19 S 1.80996 * 109.46982 * 180.02562 * 18 16 14 20 20 C 1.76203 * 100.00268 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99293 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00164 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99951 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99776 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46857 * 90.00259 * 24 22 20 26 26 H 1.48502 * 109.47195 * 209.99972 * 24 22 20 27 27 H 1.48493 * 109.47311 * 330.00129 * 24 22 20 28 28 H 1.08997 * 109.47201 * 300.00661 * 1 2 3 29 29 H 1.09007 * 109.46597 * 60.00250 * 1 2 3 30 30 H 1.08997 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.44952 * 180.28148 * 6 5 4 32 32 H 1.08000 * 120.80478 * 179.76740 * 7 6 5 33 33 H 1.08000 * 120.45258 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.46721 * 301.99201 * 11 10 2 35 35 H 1.08999 * 109.46742 * 61.98389 * 11 10 2 36 36 H 1.08994 * 109.46980 * 181.98985 * 11 10 2 37 37 H 1.09007 * 109.46401 * 309.99408 * 12 10 2 38 38 H 1.08991 * 109.47254 * 69.99145 * 12 10 2 39 39 H 1.08993 * 109.46963 * 299.99416 * 13 12 10 40 40 H 1.09004 * 109.47190 * 59.99485 * 13 12 10 41 41 H 1.09001 * 109.47074 * 89.99635 * 15 14 13 42 42 H 1.08996 * 109.47113 * 209.99728 * 15 14 13 43 43 H 1.09000 * 109.46987 * 329.99883 * 15 14 13 44 44 H 1.09001 * 109.47307 * 300.00546 * 18 16 14 45 45 H 1.08998 * 109.47135 * 60.00389 * 18 16 14 46 46 H 0.97002 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.9415 -2.0238 -1.2948 6 6 2.3678 -2.6814 -2.3611 7 6 2.9245 -1.9713 -3.4131 8 6 3.0076 -0.5919 -3.3065 9 7 2.5558 -0.0026 -2.2112 10 7 2.0197 -0.6925 1.1994 11 6 1.5067 -0.0569 2.4206 12 6 3.4875 -0.7492 1.2123 13 6 3.9520 -1.6832 2.3316 14 7 5.4158 -1.7402 2.3440 15 6 6.1791 -0.7886 3.1552 16 6 6.0604 -2.6683 1.6092 17 8 5.4285 -3.4558 0.9374 18 6 7.5662 -2.7272 1.6224 19 16 8.1269 -4.0685 0.5443 20 6 9.8707 -3.9132 0.7442 21 1 10.2740 -3.1469 1.3896 22 6 10.7258 -4.7755 0.0722 23 7 10.2341 -5.7091 -0.7148 24 14 12.5744 -4.6103 0.2836 25 1 13.0198 -5.4539 1.4217 26 1 13.2564 -5.0547 -0.9584 27 1 12.9167 -3.1912 0.5557 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2863 -3.7572 -2.4095 32 1 3.2846 -2.4804 -4.2949 33 1 3.4357 -0.0059 -4.1063 34 1 1.8081 0.9904 2.4391 35 1 0.4187 -0.1221 2.4345 36 1 1.9126 -0.5673 3.2938 37 1 3.8449 -1.1251 0.2536 38 1 3.8882 0.2499 1.3831 39 1 3.5945 -1.3074 3.2902 40 1 3.5512 -2.6824 2.1608 41 1 6.3362 -1.2039 4.1507 42 1 7.1435 -0.6007 2.6834 43 1 5.6253 0.1468 3.2350 44 1 7.9700 -1.7803 1.2640 45 1 7.9137 -2.9087 2.6395 46 1 10.8318 -6.3115 -1.1847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568474603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:04 Heat of formation + Delta-G solvation = 33.915860 kcal Electronic energy + Delta-G solvation = -27113.941575 eV Core-core repulsion = 23358.974024 eV Total energy + Delta-G solvation = -3754.967550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18069 -39.51835 -38.05476 -35.34164 -33.70316 -33.04157 -32.43032 -31.21019 -29.69804 -28.17601 -27.01691 -25.95553 -25.42994 -24.64326 -24.08647 -22.24637 -20.66111 -19.13223 -17.67664 -17.60148 -17.32758 -16.54503 -16.30089 -15.73711 -15.54634 -15.32573 -14.85335 -14.80719 -14.61839 -14.20283 -13.98649 -13.79322 -13.49526 -13.19004 -13.17586 -12.82481 -12.61814 -12.50199 -12.38061 -12.19538 -12.07619 -11.92117 -11.60082 -11.48992 -11.06602 -11.02392 -10.90059 -10.81405 -10.77105 -10.72654 -9.80584 -9.58719 -9.32032 -9.21860 -9.06773 -8.62072 -8.40321 -8.22332 -6.49881 -6.21844 -3.92177 0.83300 1.08499 2.90055 3.08916 3.21739 3.24432 3.29292 3.45481 3.63691 3.74486 3.88639 4.20259 4.27896 4.58583 4.73968 4.81720 4.90618 4.98160 5.01958 5.08710 5.09114 5.12192 5.13481 5.23195 5.25241 5.28961 5.38434 5.46419 5.51039 5.53437 5.59028 5.69471 5.71955 5.77597 5.87637 5.92585 5.97266 6.09744 6.14014 6.32003 6.62311 6.80027 6.86739 6.99823 7.56824 7.59628 8.08768 8.34993 8.60298 9.23429 10.85579 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.002918 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.888809 B = 9592.923092 C =11002.419352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.155 3.845 3 H 0.065 0.935 4 C 0.318 3.682 5 N -0.481 5.481 6 C 0.153 3.847 7 C -0.227 4.227 8 C 0.144 3.856 9 N -0.523 5.523 10 N -0.520 5.520 11 C 0.019 3.981 12 C 0.046 3.954 13 C 0.125 3.875 14 N -0.626 5.626 15 C 0.081 3.919 16 C 0.531 3.469 17 O -0.510 6.510 18 C -0.150 4.150 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 14.313 2.321 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.083 0.917 4 C 0.049 3.951 5 N -0.194 5.194 6 C -0.013 4.013 7 C -0.249 4.249 8 C -0.022 4.022 9 N -0.238 5.238 10 N -0.245 5.245 11 C -0.129 4.129 12 C -0.083 4.083 13 C 0.002 3.998 14 N -0.363 5.363 15 C -0.062 4.062 16 C 0.318 3.682 17 O -0.383 6.383 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.858 12.977 2.000 23.806 hybrid contribution 2.828 1.434 0.048 3.171 sum -17.030 14.411 2.048 22.403 Atomic orbital electron populations 1.21849 0.92273 1.03633 1.02060 1.20215 0.96085 0.94170 0.85063 0.91739 1.22823 0.91321 0.87190 0.93737 1.68284 1.16975 1.09397 1.24709 1.23370 0.89309 1.01277 0.87368 1.22976 1.02764 0.96769 1.02361 1.23150 0.91947 0.92618 0.94441 1.68148 1.11568 1.42007 1.02029 1.61816 1.08825 1.52772 1.01091 1.22537 1.01344 0.96693 0.92293 1.22444 0.86655 0.98174 1.01037 1.21291 0.79494 1.01792 0.97249 1.47854 1.06185 1.34207 1.48005 1.21757 0.96973 0.92224 0.95288 1.20359 0.89796 0.79626 0.78389 1.90705 1.68196 1.39402 1.40017 1.23559 0.93661 1.06632 1.06198 1.85374 1.04573 1.36799 1.56727 1.22861 0.91143 1.20942 1.33329 0.90994 1.24986 0.99580 0.94501 0.94497 1.70021 1.35550 1.17456 1.27266 0.86175 0.82987 0.78538 0.77846 1.20247 1.20751 1.19714 0.91333 0.92159 0.90695 0.81324 0.83399 0.81602 0.95571 0.90656 0.90753 0.90849 0.95018 0.90907 0.88785 0.92600 0.90732 0.91651 0.89456 0.89276 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.87 37.16 0.33 -0.93 16 2 C 0.15 1.76 2.47 -68.86 -0.17 1.59 16 3 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 4 C 0.32 4.33 4.87 -157.19 -0.77 3.56 16 5 N -0.48 -6.96 10.00 -10.72 -0.11 -7.06 16 6 C 0.15 1.94 11.30 -17.21 -0.19 1.74 16 7 C -0.23 -2.47 10.17 -39.32 -0.40 -2.87 16 8 C 0.14 1.63 11.30 -17.20 -0.19 1.43 16 9 N -0.52 -6.99 10.32 -10.72 -0.11 -7.11 16 10 N -0.52 -6.02 4.46 -236.28 -1.05 -7.08 16 11 C 0.02 0.16 8.93 60.07 0.54 0.69 16 12 C 0.05 0.62 5.11 -3.83 -0.02 0.60 16 13 C 0.13 1.69 5.34 -4.04 -0.02 1.67 16 14 N -0.63 -9.42 2.87 -181.57 -0.52 -9.94 16 15 C 0.08 0.89 10.24 59.85 0.61 1.51 16 16 C 0.53 10.55 7.69 -10.98 -0.08 10.47 16 17 O -0.51 -12.07 15.44 5.56 0.09 -11.98 16 18 C -0.15 -3.14 4.71 36.01 0.17 -2.97 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.07 0.48 6.41 -51.93 -0.33 0.14 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.53 6.38 -51.93 -0.33 0.20 16 36 H 0.07 0.57 6.22 -51.93 -0.32 0.25 16 37 H 0.07 1.27 6.60 -51.93 -0.34 0.93 16 38 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.07 0.76 6.37 -51.93 -0.33 0.43 16 40 H 0.09 1.53 7.42 -51.93 -0.39 1.14 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 43 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 44 H 0.09 1.71 7.40 -51.91 -0.38 1.32 16 45 H 0.09 1.74 8.11 -51.92 -0.42 1.31 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -36.57 392.27 -9.25 -45.82 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.95 Total: 0.91 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.00 Total: 3.46 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -1.06 Total: -56.67 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.57 -9.25 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568474603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.741 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds