Wall clock time and date at job start Tue Mar 31 2020 20:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47362 * 2 1 4 4 C 1.50703 * 109.47131 * 239.99441 * 2 1 3 5 5 N 1.31797 * 119.12345 * 286.30125 * 4 2 1 6 6 C 1.32328 * 120.81617 * 179.75988 * 5 4 2 7 7 C 1.38599 * 119.10726 * 0.50367 * 6 5 4 8 8 C 1.38598 * 118.39779 * 359.75178 * 7 6 5 9 9 N 1.31795 * 119.12246 * 106.57075 * 4 2 1 10 10 N 1.46897 * 109.46945 * 120.00030 * 2 1 3 11 11 C 1.46913 * 110.99834 * 302.16617 * 10 2 1 12 12 C 1.46897 * 111.00345 * 178.21710 * 10 2 1 13 13 C 1.52999 * 109.47283 * 189.99683 * 12 10 2 14 14 N 1.46500 * 109.46861 * 179.97438 * 13 12 10 15 15 C 1.46500 * 120.00084 * 90.00221 * 14 13 12 16 16 C 1.34782 * 120.00039 * 269.99567 * 14 13 12 17 17 O 1.21278 * 119.99798 * 0.02562 * 16 14 13 18 18 C 1.50700 * 119.99842 * 180.02562 * 16 14 13 19 19 S 1.80996 * 109.46982 * 180.02562 * 18 16 14 20 20 C 1.76203 * 100.00268 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99293 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00164 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99951 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99776 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46857 * 90.00259 * 24 22 20 26 26 H 1.48502 * 109.47195 * 209.99972 * 24 22 20 27 27 H 1.48493 * 109.47311 * 330.00129 * 24 22 20 28 28 H 1.08997 * 109.47201 * 300.00661 * 1 2 3 29 29 H 1.09007 * 109.46597 * 60.00250 * 1 2 3 30 30 H 1.08997 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.44952 * 180.28148 * 6 5 4 32 32 H 1.08000 * 120.80478 * 179.76740 * 7 6 5 33 33 H 1.08000 * 120.45258 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.46721 * 301.99201 * 11 10 2 35 35 H 1.08999 * 109.46742 * 61.98389 * 11 10 2 36 36 H 1.08994 * 109.46980 * 181.98985 * 11 10 2 37 37 H 1.09007 * 109.46401 * 309.99408 * 12 10 2 38 38 H 1.08991 * 109.47254 * 69.99145 * 12 10 2 39 39 H 1.08993 * 109.46963 * 299.99416 * 13 12 10 40 40 H 1.09004 * 109.47190 * 59.99485 * 13 12 10 41 41 H 1.09001 * 109.47074 * 89.99635 * 15 14 13 42 42 H 1.08996 * 109.47113 * 209.99728 * 15 14 13 43 43 H 1.09000 * 109.46987 * 329.99883 * 15 14 13 44 44 H 1.09001 * 109.47307 * 300.00546 * 18 16 14 45 45 H 1.08998 * 109.47135 * 60.00389 * 18 16 14 46 46 H 0.97002 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.9415 -2.0238 -1.2948 6 6 2.3678 -2.6814 -2.3611 7 6 2.9245 -1.9713 -3.4131 8 6 3.0076 -0.5919 -3.3065 9 7 2.5558 -0.0026 -2.2112 10 7 2.0197 -0.6925 1.1994 11 6 1.5067 -0.0569 2.4206 12 6 3.4875 -0.7492 1.2123 13 6 3.9520 -1.6832 2.3316 14 7 5.4158 -1.7402 2.3440 15 6 6.1791 -0.7886 3.1552 16 6 6.0604 -2.6683 1.6092 17 8 5.4285 -3.4558 0.9374 18 6 7.5662 -2.7272 1.6224 19 16 8.1269 -4.0685 0.5443 20 6 9.8707 -3.9132 0.7442 21 1 10.2740 -3.1469 1.3896 22 6 10.7258 -4.7755 0.0722 23 7 10.2341 -5.7091 -0.7148 24 14 12.5744 -4.6103 0.2836 25 1 13.0198 -5.4539 1.4217 26 1 13.2564 -5.0547 -0.9584 27 1 12.9167 -3.1912 0.5557 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2863 -3.7572 -2.4095 32 1 3.2846 -2.4804 -4.2949 33 1 3.4357 -0.0059 -4.1063 34 1 1.8081 0.9904 2.4391 35 1 0.4187 -0.1221 2.4345 36 1 1.9126 -0.5673 3.2938 37 1 3.8449 -1.1251 0.2536 38 1 3.8882 0.2499 1.3831 39 1 3.5945 -1.3074 3.2902 40 1 3.5512 -2.6824 2.1608 41 1 6.3362 -1.2039 4.1507 42 1 7.1435 -0.6007 2.6834 43 1 5.6253 0.1468 3.2350 44 1 7.9700 -1.7803 1.2640 45 1 7.9137 -2.9087 2.6395 46 1 10.8318 -6.3115 -1.1847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568474603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:04 Heat of formation + Delta-G solvation = 7.441238 kcal Electronic energy + Delta-G solvation = -27115.089601 eV Core-core repulsion = 23358.974024 eV Total energy + Delta-G solvation = -3756.115576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10549 -40.91867 -39.02061 -36.66872 -34.66071 -34.60064 -33.98595 -32.27709 -30.93439 -29.26633 -27.89744 -27.71220 -26.91942 -25.56749 -25.01087 -23.32259 -21.53536 -20.63450 -19.55743 -18.55984 -18.31936 -17.97730 -17.36918 -16.93914 -16.89543 -16.56750 -16.45013 -15.97740 -15.80060 -15.44211 -15.10667 -14.93208 -14.52242 -14.39854 -14.36364 -14.30067 -13.73797 -13.58897 -13.32964 -13.21693 -13.19914 -13.11500 -12.91048 -12.82661 -12.61715 -12.56419 -12.29213 -11.90392 -11.79421 -11.71633 -11.66932 -11.15659 -10.92702 -10.48590 -10.29411 -10.19270 -9.78814 -9.31746 -8.69602 -8.36014 -6.14814 -0.08716 0.14591 1.23326 1.41381 1.43988 1.53679 1.55423 2.03397 2.25756 2.63115 2.84813 2.94257 2.97984 3.24618 3.39235 3.66265 3.73935 3.86473 3.97626 4.03302 4.15238 4.16831 4.18478 4.23735 4.28426 4.32429 4.42746 4.45661 4.50828 4.64404 4.65796 4.74290 4.81805 4.82700 4.87632 4.89261 4.95808 5.10855 5.26891 5.39867 5.42967 5.50504 5.91800 5.99048 6.11284 6.18104 6.24679 7.04919 7.12005 7.13782 8.73301 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.002918 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.888809 B = 9592.923092 C =11002.419352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.154 3.846 3 H 0.067 0.933 4 C 0.303 3.697 5 N -0.509 5.509 6 C 0.128 3.872 7 C -0.225 4.225 8 C 0.135 3.865 9 N -0.541 5.541 10 N -0.532 5.532 11 C 0.017 3.983 12 C 0.060 3.940 13 C 0.129 3.871 14 N -0.613 5.613 15 C 0.071 3.929 16 C 0.527 3.473 17 O -0.560 6.560 18 C -0.123 4.123 19 S -0.151 6.151 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.258 1.258 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.199 0.801 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.028 0.972 38 H 0.044 0.956 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 16.880 4.066 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.044 3.956 3 H 0.084 0.916 4 C 0.034 3.966 5 N -0.222 5.222 6 C -0.037 4.037 7 C -0.246 4.246 8 C -0.030 4.030 9 N -0.255 5.255 10 N -0.258 5.258 11 C -0.129 4.129 12 C -0.069 4.069 13 C 0.007 3.993 14 N -0.347 5.347 15 C -0.070 4.070 16 C 0.314 3.686 17 O -0.438 6.438 18 C -0.274 4.274 19 S 0.076 5.924 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.182 1.182 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.194 0.806 33 H 0.215 0.785 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.334 15.591 3.789 25.124 hybrid contribution 2.558 0.706 -0.460 2.693 sum -16.776 16.297 3.329 23.624 Atomic orbital electron populations 1.21794 0.90568 1.03056 1.03429 1.20336 0.97332 0.93721 0.84244 0.91558 1.23285 0.91443 0.87176 0.94658 1.68259 1.18162 1.10142 1.25658 1.23741 0.89935 1.02150 0.87891 1.23282 1.01784 0.96863 1.02684 1.23775 0.91312 0.93242 0.94681 1.68205 1.12190 1.42407 1.02734 1.61790 1.07516 1.54032 1.02492 1.22655 1.02223 0.97301 0.90768 1.22172 0.88144 0.98139 0.98450 1.21373 0.78248 1.00357 0.99368 1.47863 1.07125 1.33169 1.46587 1.22110 0.96914 0.92699 0.95313 1.20224 0.89272 0.80303 0.78788 1.90690 1.68792 1.41819 1.42504 1.23370 0.94702 1.04117 1.05204 1.85577 1.05930 1.41116 1.59748 1.23184 0.91111 1.21422 1.33676 0.89998 1.26134 1.05358 0.93807 0.93788 1.70187 1.37665 1.18502 1.28357 0.84948 0.75668 0.79262 0.78067 1.19238 1.20216 1.18190 0.88814 0.91882 0.92166 0.80364 0.80627 0.78452 0.94165 0.89243 0.89923 0.95373 0.93812 0.86738 0.92115 0.90537 0.90891 0.88308 0.87795 0.87400 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.87 71.98 0.64 -1.57 16 2 C 0.15 3.42 2.47 44.17 0.11 3.53 16 3 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 4 C 0.30 8.47 4.87 138.75 0.68 9.15 16 5 N -0.51 -15.53 10.00 -187.84 -1.88 -17.41 16 6 C 0.13 3.45 11.30 84.70 0.96 4.41 16 7 C -0.22 -4.97 10.17 22.44 0.23 -4.74 16 8 C 0.14 3.04 11.30 84.70 0.96 4.00 16 9 N -0.54 -14.63 10.32 -187.84 -1.94 -16.57 16 10 N -0.53 -11.85 4.46 -901.46 -4.02 -15.86 16 11 C 0.02 0.24 8.93 127.69 1.14 1.38 16 12 C 0.06 1.58 5.11 86.30 0.44 2.03 16 13 C 0.13 3.34 5.34 86.38 0.46 3.80 16 14 N -0.61 -17.57 2.87 -846.76 -2.43 -20.00 16 15 C 0.07 1.32 10.24 127.77 1.31 2.63 16 16 C 0.53 21.15 7.69 87.66 0.67 21.82 16 17 O -0.56 -27.83 15.44 -3.02 -0.05 -27.88 16 18 C -0.12 -5.13 4.71 71.24 0.34 -4.79 16 19 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 20 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.80 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 24 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 28 H 0.09 1.08 6.41 -2.39 -0.02 1.06 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.98 6.38 -2.39 -0.02 0.97 16 36 H 0.08 0.98 6.22 -2.39 -0.01 0.97 16 37 H 0.03 1.00 6.60 -2.38 -0.02 0.99 16 38 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 39 H 0.11 2.01 6.37 -2.39 -0.02 1.99 16 40 H 0.06 2.02 7.42 -2.38 -0.02 2.00 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.41 6.44 -2.39 -0.02 1.40 16 43 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16 44 H 0.10 3.97 7.40 -2.40 -0.02 3.95 16 45 H 0.11 4.07 8.11 -2.40 -0.02 4.05 16 46 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -84.46 392.27 0.85 -83.61 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.97 Total: 22.08 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 9.04 Total: 12.00 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -9.98 Total: -125.79 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -84.46 0.85 -83.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568474603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.050 kcal (2) G-P(sol) polarization free energy of solvation -84.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds