Wall clock time and date at job start Tue Mar 31 2020 20:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47113 * 2 1 4 4 C 1.52995 * 109.47427 * 240.00039 * 2 1 3 5 5 C 1.50706 * 109.46970 * 64.99806 * 4 2 1 6 6 C 1.38260 * 119.99097 * 90.00593 * 5 4 2 7 7 C 1.38218 * 120.02920 * 179.97438 * 6 5 4 8 8 C 1.38238 * 120.00976 * 0.02562 * 7 6 5 9 9 C 1.38334 * 119.98816 * 359.97438 * 8 7 6 10 10 Cl 1.73601 * 120.01413 * 179.72840 * 9 8 7 11 11 C 1.38187 * 119.99420 * 270.00266 * 5 4 2 12 12 C 1.50700 * 109.46985 * 120.00185 * 2 1 3 13 13 O 1.21280 * 119.99992 * 120.00259 * 12 2 1 14 14 N 1.34773 * 119.99918 * 299.99854 * 12 2 1 15 15 C 1.46496 * 120.00346 * 0.02562 * 14 12 2 16 16 C 1.46507 * 120.00028 * 180.02562 * 14 12 2 17 17 C 1.52996 * 109.47344 * 90.00026 * 16 14 12 18 18 N 1.46496 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.46501 * 120.00286 * 89.99915 * 18 17 16 20 20 C 1.36936 * 119.99728 * 269.99949 * 18 17 16 21 21 H 1.08003 * 120.00375 * 23.04420 * 20 18 17 22 22 C 1.38811 * 120.00033 * 203.04489 * 20 18 17 23 23 N 1.31620 * 120.00261 * 12.92462 * 22 20 18 24 24 Si 1.86803 * 120.00185 * 192.92608 * 22 20 18 25 25 H 1.48503 * 109.47049 * 59.99733 * 24 22 20 26 26 H 1.48498 * 109.47341 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46929 * 300.00183 * 24 22 20 28 28 H 1.09000 * 109.47112 * 59.99781 * 1 2 3 29 29 H 1.09004 * 109.47351 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47356 * 299.99783 * 1 2 3 31 31 H 1.09009 * 109.47143 * 305.00322 * 4 2 1 32 32 H 1.08998 * 109.47832 * 185.00227 * 4 2 1 33 33 H 1.08001 * 119.99021 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.00115 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.00719 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.00907 * 359.97438 * 11 5 4 37 37 H 1.08995 * 109.47352 * 89.99572 * 15 14 12 38 38 H 1.09003 * 109.47475 * 210.00230 * 15 14 12 39 39 H 1.09009 * 109.46975 * 329.99811 * 15 14 12 40 40 H 1.09001 * 109.47061 * 210.00147 * 16 14 12 41 41 H 1.09001 * 109.47107 * 329.99719 * 16 14 12 42 42 H 1.09001 * 109.47140 * 300.00072 * 17 16 14 43 43 H 1.09001 * 109.47269 * 59.99792 * 17 16 14 44 44 H 1.09000 * 109.47164 * 95.12434 * 19 18 17 45 45 H 1.09001 * 109.47000 * 215.12407 * 19 18 17 46 46 H 1.08998 * 109.46934 * 335.11832 * 19 18 17 47 47 H 0.96993 * 120.00262 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 6 2.4817 1.0332 -2.9792 7 6 2.1170 1.7471 -4.1051 8 6 0.9114 1.4859 -4.7290 9 6 0.0701 0.5095 -4.2266 10 17 -1.4472 0.1858 -5.0055 11 6 0.4359 -0.2049 -3.0994 12 6 2.0322 -0.7105 1.2304 13 8 2.7295 -1.6965 1.1192 14 7 1.7066 -0.2500 2.4545 15 6 0.8640 0.9408 2.5890 16 6 2.1954 -0.9403 3.6508 17 6 3.5430 -0.3474 4.0670 18 7 4.0320 -1.0381 5.2628 19 6 4.8748 -2.2288 5.1278 20 6 3.7013 -0.5708 6.5067 21 1 2.8204 0.0401 6.6375 22 6 4.4984 -0.8822 7.5996 23 7 5.6936 -1.4020 7.4158 24 14 3.8749 -0.5635 9.3315 25 1 2.6313 -1.3421 9.5609 26 1 4.9075 -0.9803 10.3139 27 1 3.5898 0.8845 9.4963 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7995 -1.2056 33 1 3.4239 1.2373 -2.4924 34 1 2.7736 2.5097 -4.4971 35 1 0.6267 2.0435 -5.6090 36 1 -0.2203 -0.9677 -2.7070 37 1 -0.1838 0.6425 2.6225 38 1 1.1217 1.4664 3.5085 39 1 1.0272 1.5996 1.7360 40 1 1.4775 -0.8152 4.4613 41 1 2.3168 -2.0016 3.4337 42 1 4.2610 -0.4726 3.2564 43 1 3.4216 0.7138 4.2840 44 1 5.9242 -1.9397 5.1856 45 1 4.6460 -2.9289 5.9314 46 1 4.6812 -2.7039 4.1661 47 1 6.2504 -1.6200 8.1795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568507023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:16 Heat of formation + Delta-G solvation = 2.614820 kcal Electronic energy + Delta-G solvation = -26650.785968 eV Core-core repulsion = 22860.124645 eV Total energy + Delta-G solvation = -3790.661323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38140 -39.46770 -36.89770 -36.16207 -35.20680 -34.79781 -31.76842 -31.11516 -30.97380 -28.51144 -27.11606 -26.52679 -25.78150 -24.36689 -23.02616 -22.73864 -21.24538 -20.34981 -18.82992 -17.46911 -16.86043 -16.61247 -16.09465 -16.00350 -15.68535 -15.24525 -14.81130 -14.40329 -14.16880 -14.03572 -13.79612 -13.60666 -13.28674 -13.01801 -12.98816 -12.69668 -12.48529 -12.39170 -12.17263 -12.04084 -11.82960 -11.75395 -11.65641 -11.34277 -11.15809 -11.12340 -11.06411 -10.84302 -10.81327 -10.51041 -10.18879 -9.89508 -9.79948 -9.50177 -9.23576 -8.99171 -8.67026 -8.35869 -6.69897 -5.69588 -3.17742 0.79353 0.88992 1.77330 2.81402 3.13573 3.32437 3.38762 3.44332 3.45152 4.26419 4.43619 4.51867 4.57505 4.70014 4.72825 4.81046 4.95332 5.01440 5.05148 5.21516 5.28235 5.37410 5.45131 5.47439 5.51915 5.54196 5.66226 5.67941 5.74853 5.78700 5.84638 5.95658 5.97289 6.00464 6.18175 6.23578 6.32141 6.44284 6.56847 6.68553 6.90324 6.99253 7.43691 7.62879 7.76911 7.82916 8.37226 8.43468 9.25637 9.89242 10.39424 11.34701 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.001935 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.518274 B =14464.347787 C =14779.791174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.064 4.064 5 C -0.061 4.061 6 C -0.112 4.112 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.033 4.033 10 Cl -0.075 7.075 11 C -0.106 4.106 12 C 0.513 3.487 13 O -0.538 6.538 14 N -0.609 5.609 15 C 0.076 3.924 16 C 0.092 3.908 17 C 0.144 3.856 18 N -0.600 5.600 19 C 0.162 3.838 20 C -0.258 4.258 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.906 5.906 24 Si 0.905 3.095 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.001 0.999 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 7.262 -24.442 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 H 0.115 0.885 4 C -0.101 4.101 5 C -0.062 4.062 6 C -0.130 4.130 7 C -0.123 4.123 8 C -0.137 4.137 9 C -0.060 4.060 10 Cl -0.046 7.046 11 C -0.125 4.125 12 C 0.300 3.700 13 O -0.415 6.415 14 N -0.342 5.342 15 C -0.067 4.067 16 C -0.032 4.032 17 C 0.015 3.985 18 N -0.323 5.323 19 C 0.017 3.983 20 C -0.387 4.387 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.551 5.551 24 Si 0.735 3.265 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.210 1.210 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.383 6.635 -24.399 28.155 hybrid contribution -0.494 0.256 0.970 1.118 sum -12.878 6.891 -23.430 27.609 Atomic orbital electron populations 1.22136 0.93074 1.03059 1.03447 1.21225 0.97714 1.00750 0.92713 0.88528 1.20452 1.02685 0.98107 0.88894 1.19894 0.93443 0.96304 0.96542 1.21251 0.99984 0.95472 0.96254 1.21125 0.95908 0.99642 0.95626 1.21047 0.94274 0.97525 1.00843 1.20934 0.89046 0.99631 0.96384 1.98376 1.30789 1.94986 1.80431 1.21007 0.96979 1.00127 0.94363 1.20496 0.80369 0.84720 0.84425 1.90709 1.37916 1.26511 1.86385 1.47949 1.50734 1.29054 1.06508 1.21945 0.94244 0.87490 1.03064 1.22527 0.98640 0.97761 0.84294 1.20965 0.92471 0.95265 0.89773 1.43835 1.58764 1.28880 1.00815 1.20803 0.94644 0.87615 0.95194 1.19115 1.05454 1.29960 0.84208 0.91566 1.25046 0.95161 1.01033 0.98443 1.70070 1.08195 1.47510 1.29289 0.86333 0.77801 0.77974 0.84377 1.21088 1.21632 1.20961 0.91442 0.92095 0.90815 0.89928 0.89468 0.85165 0.85056 0.85150 0.84879 0.92535 0.90695 0.91234 0.90877 0.90589 0.94420 0.93747 0.95114 0.94149 0.98012 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.40 37.15 0.31 -1.02 16 2 C -0.10 -1.03 1.91 -91.78 -0.18 -1.21 16 3 H 0.10 0.86 7.40 -51.93 -0.38 0.47 16 4 C -0.06 -0.63 4.19 -27.88 -0.12 -0.75 16 5 C -0.06 -0.52 4.71 -104.63 -0.49 -1.02 16 6 C -0.11 -0.86 9.70 -39.58 -0.38 -1.24 16 7 C -0.10 -0.71 10.05 -39.59 -0.40 -1.11 16 8 C -0.12 -0.86 9.83 -39.55 -0.39 -1.25 16 9 C -0.03 -0.28 6.32 -39.50 -0.25 -0.53 16 10 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.11 16 11 C -0.11 -0.89 7.75 -39.55 -0.31 -1.19 16 12 C 0.51 7.49 7.08 -10.99 -0.08 7.41 16 13 O -0.54 -10.10 15.50 5.56 0.09 -10.02 16 14 N -0.61 -8.78 2.87 -181.57 -0.52 -9.30 16 15 C 0.08 0.77 8.80 59.84 0.53 1.30 16 16 C 0.09 1.68 5.73 -4.04 -0.02 1.66 16 17 C 0.14 3.08 5.97 -4.05 -0.02 3.05 16 18 N -0.60 -15.54 2.92 -181.12 -0.53 -16.07 16 19 C 0.16 4.22 8.98 59.85 0.54 4.75 16 20 C -0.26 -7.10 9.65 -15.06 -0.15 -7.25 16 21 H 0.07 1.75 7.86 -52.48 -0.41 1.33 16 22 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 23 N -0.91 -26.88 10.71 55.49 0.59 -26.28 16 24 Si 0.91 21.84 29.57 -169.99 -5.03 16.81 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.07 0.50 6.27 -51.93 -0.33 0.17 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.56 4.53 -51.93 -0.24 0.32 16 31 H 0.08 0.87 8.09 -51.92 -0.42 0.45 16 32 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.03 8.04 -52.49 -0.42 0.61 16 37 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 38 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.07 0.56 6.01 -51.92 -0.31 0.24 16 40 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 41 H 0.08 1.55 7.42 -51.93 -0.39 1.17 16 42 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 45 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 46 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -32.56 392.07 -9.83 -42.39 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.35 Total: -2.90 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.49 Total: 1.57 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.46 Total: -51.66 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.56 -9.83 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568507023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.004 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds