Wall clock time and date at job start Tue Mar 31 2020 20:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47113 * 2 1 4 4 C 1.52995 * 109.47427 * 240.00039 * 2 1 3 5 5 C 1.50706 * 109.46970 * 64.99806 * 4 2 1 6 6 C 1.38260 * 119.99097 * 90.00593 * 5 4 2 7 7 C 1.38218 * 120.02920 * 179.97438 * 6 5 4 8 8 C 1.38238 * 120.00976 * 0.02562 * 7 6 5 9 9 C 1.38334 * 119.98816 * 359.97438 * 8 7 6 10 10 Cl 1.73601 * 120.01413 * 179.72840 * 9 8 7 11 11 C 1.38187 * 119.99420 * 270.00266 * 5 4 2 12 12 C 1.50700 * 109.46985 * 120.00185 * 2 1 3 13 13 O 1.21280 * 119.99992 * 120.00259 * 12 2 1 14 14 N 1.34773 * 119.99918 * 299.99854 * 12 2 1 15 15 C 1.46496 * 120.00346 * 0.02562 * 14 12 2 16 16 C 1.46507 * 120.00028 * 180.02562 * 14 12 2 17 17 C 1.52996 * 109.47344 * 90.00026 * 16 14 12 18 18 N 1.46496 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.46501 * 120.00286 * 89.99915 * 18 17 16 20 20 C 1.36936 * 119.99728 * 269.99949 * 18 17 16 21 21 H 1.08003 * 120.00375 * 23.04420 * 20 18 17 22 22 C 1.38811 * 120.00033 * 203.04489 * 20 18 17 23 23 N 1.31620 * 120.00261 * 12.92462 * 22 20 18 24 24 Si 1.86803 * 120.00185 * 192.92608 * 22 20 18 25 25 H 1.48503 * 109.47049 * 59.99733 * 24 22 20 26 26 H 1.48498 * 109.47341 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46929 * 300.00183 * 24 22 20 28 28 H 1.09000 * 109.47112 * 59.99781 * 1 2 3 29 29 H 1.09004 * 109.47351 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47356 * 299.99783 * 1 2 3 31 31 H 1.09009 * 109.47143 * 305.00322 * 4 2 1 32 32 H 1.08998 * 109.47832 * 185.00227 * 4 2 1 33 33 H 1.08001 * 119.99021 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.00115 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.00719 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.00907 * 359.97438 * 11 5 4 37 37 H 1.08995 * 109.47352 * 89.99572 * 15 14 12 38 38 H 1.09003 * 109.47475 * 210.00230 * 15 14 12 39 39 H 1.09009 * 109.46975 * 329.99811 * 15 14 12 40 40 H 1.09001 * 109.47061 * 210.00147 * 16 14 12 41 41 H 1.09001 * 109.47107 * 329.99719 * 16 14 12 42 42 H 1.09001 * 109.47140 * 300.00072 * 17 16 14 43 43 H 1.09001 * 109.47269 * 59.99792 * 17 16 14 44 44 H 1.09000 * 109.47164 * 95.12434 * 19 18 17 45 45 H 1.09001 * 109.47000 * 215.12407 * 19 18 17 46 46 H 1.08998 * 109.46934 * 335.11832 * 19 18 17 47 47 H 0.96993 * 120.00262 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 6 2.4817 1.0332 -2.9792 7 6 2.1170 1.7471 -4.1051 8 6 0.9114 1.4859 -4.7290 9 6 0.0701 0.5095 -4.2266 10 17 -1.4472 0.1858 -5.0055 11 6 0.4359 -0.2049 -3.0994 12 6 2.0322 -0.7105 1.2304 13 8 2.7295 -1.6965 1.1192 14 7 1.7066 -0.2500 2.4545 15 6 0.8640 0.9408 2.5890 16 6 2.1954 -0.9403 3.6508 17 6 3.5430 -0.3474 4.0670 18 7 4.0320 -1.0381 5.2628 19 6 4.8748 -2.2288 5.1278 20 6 3.7013 -0.5708 6.5067 21 1 2.8204 0.0401 6.6375 22 6 4.4984 -0.8822 7.5996 23 7 5.6936 -1.4020 7.4158 24 14 3.8749 -0.5635 9.3315 25 1 2.6313 -1.3421 9.5609 26 1 4.9075 -0.9803 10.3139 27 1 3.5898 0.8845 9.4963 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7995 -1.2056 33 1 3.4239 1.2373 -2.4924 34 1 2.7736 2.5097 -4.4971 35 1 0.6267 2.0435 -5.6090 36 1 -0.2203 -0.9677 -2.7070 37 1 -0.1838 0.6425 2.6225 38 1 1.1217 1.4664 3.5085 39 1 1.0272 1.5996 1.7360 40 1 1.4775 -0.8152 4.4613 41 1 2.3168 -2.0016 3.4337 42 1 4.2610 -0.4726 3.2564 43 1 3.4216 0.7138 4.2840 44 1 5.9242 -1.9397 5.1856 45 1 4.6460 -2.9289 5.9314 46 1 4.6812 -2.7039 4.1661 47 1 6.2504 -1.6200 8.1795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568507023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:15 Heat of formation + Delta-G solvation = -14.193249 kcal Electronic energy + Delta-G solvation = -26651.514820 eV Core-core repulsion = 22860.124645 eV Total energy + Delta-G solvation = -3791.390175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36396 -40.24848 -37.90091 -37.47254 -36.46569 -35.90511 -33.49644 -32.01386 -31.68168 -30.01985 -28.08430 -27.85463 -27.38189 -25.80328 -23.95961 -23.52135 -22.51919 -21.70335 -19.92622 -18.75856 -18.26138 -17.57987 -17.42704 -16.75359 -16.66097 -16.31682 -16.24805 -15.53436 -15.47843 -15.24978 -14.72549 -14.61133 -14.46605 -14.29314 -14.03518 -13.83211 -13.75661 -13.62931 -13.15751 -13.08817 -12.96206 -12.76265 -12.72359 -12.49641 -12.46350 -12.36023 -12.31143 -12.16966 -11.93982 -11.92935 -11.87059 -11.71389 -11.62865 -10.73233 -10.62874 -9.82210 -9.74223 -9.60381 -8.76406 -7.82561 -5.34535 0.20388 0.31376 1.17997 1.47372 1.51098 1.57391 1.67174 2.05012 2.52638 2.67848 3.30759 3.42197 3.75128 3.80922 3.86777 3.97498 4.03340 4.14740 4.22447 4.28235 4.35237 4.42818 4.44268 4.50456 4.61392 4.65749 4.71414 4.78798 4.83096 4.85403 4.89818 4.93199 4.99293 5.03407 5.12275 5.18914 5.27716 5.28974 5.32846 5.42014 5.56645 5.60610 5.61248 5.64917 5.87629 6.30630 6.49198 7.11548 7.22914 7.82045 8.29774 9.21015 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.001935 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.518274 B =14464.347787 C =14779.791174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 H 0.118 0.882 4 C -0.058 4.058 5 C -0.067 4.067 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.119 4.119 9 C -0.044 4.044 10 Cl -0.077 7.077 11 C -0.112 4.112 12 C 0.507 3.493 13 O -0.588 6.588 14 N -0.610 5.610 15 C 0.068 3.932 16 C 0.111 3.889 17 C 0.149 3.851 18 N -0.617 5.617 19 C 0.180 3.820 20 C -0.264 4.264 21 H 0.079 0.921 22 C -0.058 4.058 23 N -0.942 5.942 24 Si 0.976 3.024 25 H -0.277 1.277 26 H -0.297 1.297 27 H -0.270 1.270 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.005 0.995 45 H 0.019 0.981 46 H 0.017 0.983 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 9.579 -25.384 30.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 H 0.135 0.865 4 C -0.096 4.096 5 C -0.067 4.067 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.138 4.138 9 C -0.070 4.070 10 Cl -0.048 7.048 11 C -0.130 4.130 12 C 0.296 3.704 13 O -0.468 6.468 14 N -0.342 5.342 15 C -0.073 4.073 16 C -0.014 4.014 17 C 0.022 3.978 18 N -0.341 5.341 19 C 0.034 3.966 20 C -0.394 4.394 21 H 0.097 0.903 22 C -0.253 4.253 23 N -0.589 5.589 24 Si 0.803 3.197 25 H -0.203 1.203 26 H -0.224 1.224 27 H -0.196 1.196 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.023 0.977 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.440 9.001 -25.376 30.552 hybrid contribution 0.130 -0.437 1.150 1.237 sum -14.310 8.564 -24.226 29.411 Atomic orbital electron populations 1.22120 0.91281 1.02992 1.04738 1.21215 0.98954 1.00884 0.90099 0.86456 1.20325 1.01597 0.97885 0.89796 1.19725 0.93935 0.96820 0.96269 1.21433 1.00155 0.95239 0.96652 1.21402 0.95940 0.99686 0.94952 1.21314 0.94162 0.97106 1.01193 1.21051 0.89287 1.00147 0.96548 1.98374 1.30971 1.95052 1.80424 1.21030 0.97042 1.00324 0.94638 1.21360 0.79333 0.84187 0.85518 1.90687 1.40166 1.28859 1.87129 1.47995 1.50943 1.30033 1.05235 1.22267 0.94585 0.86099 1.04366 1.21923 0.97016 0.96363 0.86112 1.21032 0.93556 0.95455 0.87775 1.44078 1.59005 1.29109 1.01937 1.20493 0.93336 0.87647 0.95089 1.19534 1.05571 1.29391 0.84912 0.90292 1.25932 0.95377 1.01436 1.02549 1.70254 1.09502 1.49133 1.29997 0.85219 0.76999 0.78375 0.79097 1.20285 1.22379 1.19576 0.90055 0.92934 0.89516 0.91196 0.91001 0.84318 0.82640 0.83584 0.84779 0.90325 0.90769 0.88437 0.90299 0.93243 0.95669 0.92940 0.97677 0.96251 0.96399 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.40 71.98 0.60 -1.57 16 2 C -0.09 -1.67 1.91 -11.54 -0.02 -1.70 16 3 H 0.12 1.72 7.40 -2.39 -0.02 1.70 16 4 C -0.06 -1.13 4.19 29.85 0.12 -1.00 16 5 C -0.07 -1.05 4.71 -19.87 -0.09 -1.15 16 6 C -0.12 -1.56 9.70 22.27 0.22 -1.34 16 7 C -0.10 -1.11 10.05 22.26 0.22 -0.88 16 8 C -0.12 -1.44 9.83 22.29 0.22 -1.22 16 9 C -0.04 -0.65 6.32 22.33 0.14 -0.51 16 10 Cl -0.08 -1.14 28.96 -2.72 -0.08 -1.22 16 11 C -0.11 -1.71 7.75 22.29 0.17 -1.54 16 12 C 0.51 14.51 7.08 87.66 0.62 15.13 16 13 O -0.59 -22.68 15.50 -3.03 -0.05 -22.73 16 14 N -0.61 -16.76 2.87 -846.75 -2.43 -19.19 16 15 C 0.07 1.18 8.80 127.77 1.12 2.30 16 16 C 0.11 4.03 5.73 86.38 0.50 4.53 16 17 C 0.15 6.38 5.97 86.38 0.52 6.89 16 18 N -0.62 -32.38 2.92 -726.95 -2.12 -34.51 16 19 C 0.18 9.66 8.98 127.77 1.15 10.81 16 20 C -0.26 -14.51 9.65 84.03 0.81 -13.70 16 21 H 0.08 4.05 7.86 -2.91 -0.02 4.03 16 22 C -0.06 -3.29 5.10 84.86 0.43 -2.86 16 23 N -0.94 -57.17 10.71 21.65 0.23 -56.93 16 24 Si 0.98 44.86 29.57 68.60 2.03 46.89 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H 0.08 0.97 6.27 -2.39 -0.01 0.96 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 1.00 4.53 -2.38 -0.01 0.99 16 31 H 0.07 1.51 8.09 -2.38 -0.02 1.49 16 32 H 0.07 1.60 7.90 -2.39 -0.02 1.58 16 33 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.13 1.95 8.04 -2.91 -0.02 1.93 16 37 H 0.08 1.06 6.95 -2.39 -0.02 1.04 16 38 H 0.07 1.33 8.07 -2.39 -0.02 1.31 16 39 H 0.10 1.16 6.01 -2.38 -0.01 1.14 16 40 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 41 H 0.05 2.06 7.42 -2.39 -0.02 2.04 16 42 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 43 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 44 H 0.00 0.29 7.34 -2.39 -0.02 0.27 16 45 H 0.02 1.08 7.34 -2.39 -0.02 1.06 16 46 H 0.02 0.87 8.03 -2.39 -0.02 0.85 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -71.90 392.07 5.26 -66.64 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.95 Total: 8.86 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.73 Total: 12.19 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.33 Total: -110.64 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -71.90 5.26 -66.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568507023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.448 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds