Wall clock time and date at job start Tue Mar 31 2020 20:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47093 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99415 * 2 1 3 5 5 N 1.46505 * 109.47059 * 185.00084 * 4 2 1 6 6 C 1.46497 * 119.99899 * 269.99920 * 5 4 2 7 7 C 1.36932 * 120.00060 * 90.00441 * 5 4 2 8 8 H 1.07997 * 120.00306 * 22.01893 * 7 5 4 9 9 C 1.38815 * 119.99891 * 202.03186 * 7 5 4 10 10 N 1.31622 * 120.00132 * 11.42509 * 9 7 5 11 11 Si 1.86798 * 120.00101 * 191.43252 * 9 7 5 12 12 H 1.48502 * 109.47064 * 59.99530 * 11 9 7 13 13 H 1.48506 * 109.47265 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46979 * 299.99599 * 11 9 7 15 15 N 1.46507 * 109.47089 * 119.99765 * 2 1 3 16 16 C 1.34780 * 119.99313 * 275.00004 * 15 2 1 17 17 O 1.21278 * 120.00534 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99305 * 180.02562 * 16 15 2 19 19 H 1.09004 * 109.47294 * 59.99854 * 18 16 15 20 20 C 1.52996 * 109.47252 * 299.99456 * 18 16 15 21 21 C 1.53002 * 109.46925 * 179.97438 * 18 16 15 22 22 C 1.50700 * 109.47190 * 184.99775 * 21 18 16 23 23 C 1.38242 * 120.00449 * 99.99815 * 22 21 18 24 24 C 1.38218 * 120.01110 * 179.97438 * 23 22 21 25 25 C 1.38268 * 120.02706 * 359.95978 * 24 23 22 26 26 C 1.38191 * 120.01268 * 0.02562 * 25 24 23 27 27 C 1.38323 * 120.00684 * 280.23281 * 22 21 18 28 28 Cl 1.73606 * 120.01529 * 0.04040 * 27 22 21 29 29 H 1.09002 * 109.47059 * 60.00747 * 1 2 3 30 30 H 1.09004 * 109.46875 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47106 * 300.00608 * 1 2 3 32 32 H 1.08997 * 109.47503 * 304.99971 * 4 2 1 33 33 H 1.09004 * 109.47470 * 65.00292 * 4 2 1 34 34 H 1.09001 * 109.47110 * 94.04056 * 6 5 4 35 35 H 1.08999 * 109.47398 * 214.04417 * 6 5 4 36 36 H 1.09001 * 109.47504 * 334.04616 * 6 5 4 37 37 H 0.96996 * 119.99828 * 180.02562 * 10 9 7 38 38 H 0.96990 * 120.00299 * 95.00156 * 15 2 1 39 39 H 1.09000 * 109.46973 * 60.00210 * 20 18 16 40 40 H 1.08993 * 109.47676 * 180.02562 * 20 18 16 41 41 H 1.09004 * 109.47296 * 300.00397 * 20 18 16 42 42 H 1.08997 * 109.47431 * 64.99681 * 21 18 16 43 43 H 1.09007 * 109.46964 * 304.99632 * 21 18 16 44 44 H 1.07998 * 119.99676 * 359.97438 * 23 22 21 45 45 H 1.07999 * 119.98532 * 179.97438 * 24 23 22 46 46 H 1.07994 * 119.99270 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.00890 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3343 0.2338 -1.7613 7 6 4.0850 -1.9160 -0.6022 8 1 3.5321 -2.8384 -0.5038 9 6 5.3885 -1.8346 -0.1320 10 7 5.9844 -0.6643 -0.0435 11 14 6.2971 -3.3859 0.3750 12 1 6.3915 -4.3063 -0.7866 13 1 7.6631 -3.0309 0.8370 14 1 5.5593 -4.0539 1.4772 15 7 2.0184 -0.6906 1.1963 16 6 2.1470 -0.0180 2.3572 17 8 1.8590 1.1588 2.4114 18 6 2.6499 -0.7283 3.5875 19 1 3.6493 -1.1201 3.3980 20 6 1.7064 -1.8824 3.9316 21 6 2.7018 0.2551 4.7586 22 6 3.3191 -0.4213 5.9555 23 6 4.6475 -0.1986 6.2666 24 6 5.2136 -0.8184 7.3647 25 6 4.4516 -1.6608 8.1530 26 6 3.1235 -1.8840 7.8431 27 6 2.5579 -1.2688 6.7401 28 17 0.8916 -1.5546 6.3458 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 1.7517 -0.1585 -2.1370 34 1 4.5995 0.9472 -0.9810 35 1 5.2419 -0.2027 -2.1783 36 1 3.7823 0.7460 -2.5493 37 1 6.8953 -0.6075 0.2848 38 1 2.2491 -1.6316 1.1528 39 1 1.6697 -2.5828 3.0973 40 1 2.0697 -2.3958 4.8218 41 1 0.7070 -1.4906 4.1212 42 1 1.6911 0.5795 5.0057 43 1 3.3033 1.1204 4.4799 44 1 5.2431 0.4599 5.6517 45 1 6.2516 -0.6444 7.6072 46 1 4.8944 -2.1445 9.0110 47 1 2.5283 -2.5417 8.4590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569141204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:27 Heat of formation + Delta-G solvation = 1.935754 kcal Electronic energy + Delta-G solvation = -28189.864880 eV Core-core repulsion = 24399.174110 eV Total energy + Delta-G solvation = -3790.690769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.93311 -38.97493 -36.58755 -36.37288 -34.67631 -33.89659 -31.61590 -30.94893 -30.64461 -29.58729 -26.64485 -26.15290 -25.59430 -23.87725 -22.68784 -21.88136 -21.11061 -19.86971 -19.23395 -17.26920 -16.82415 -16.31600 -15.84603 -15.55790 -15.26089 -14.88596 -14.80650 -14.22493 -13.95709 -13.81816 -13.44835 -13.31862 -13.07460 -12.83426 -12.78961 -12.40121 -12.18587 -12.09347 -11.84841 -11.58958 -11.46395 -11.36989 -11.26842 -11.16014 -10.86795 -10.83297 -10.71923 -10.68529 -10.37736 -10.21858 -10.07406 -9.95693 -9.82470 -9.07292 -8.92963 -8.60103 -8.57357 -8.16019 -6.78307 -5.74633 -3.20393 1.06500 1.17751 2.09571 3.32381 3.39690 3.40512 3.42785 3.51827 4.00148 4.45094 4.68505 4.70214 4.88602 5.13993 5.16986 5.24160 5.34914 5.34979 5.38402 5.52018 5.60559 5.68692 5.74970 5.82029 5.91346 5.97369 6.01670 6.04770 6.11430 6.13933 6.20085 6.29137 6.30499 6.38822 6.41429 6.48838 6.55240 6.57677 6.72050 6.76473 6.93209 7.38012 7.40325 7.69560 7.79573 8.35459 8.41556 9.05877 9.20047 9.84052 10.34242 11.29474 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.004277 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.839610 B = 6545.120829 C = 8033.697998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.255 4.255 8 H 0.065 0.935 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.686 5.686 16 C 0.525 3.475 17 O -0.565 6.565 18 C -0.102 4.102 19 H 0.099 0.901 20 C -0.151 4.151 21 C -0.063 4.063 22 C -0.062 4.062 23 C -0.102 4.102 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.035 4.035 28 Cl -0.064 7.064 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.045 0.955 36 H -0.005 1.005 37 H 0.252 0.748 38 H 0.403 0.597 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -2.086 13.126 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.083 0.917 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.725 3.275 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.334 5.334 16 C 0.311 3.689 17 O -0.445 6.445 18 C -0.123 4.123 19 H 0.117 0.883 20 C -0.208 4.208 21 C -0.101 4.101 22 C -0.063 4.063 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.062 4.062 28 Cl -0.035 7.035 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.013 0.987 37 H 0.062 0.938 38 H 0.239 0.761 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.885 -1.242 13.122 14.871 hybrid contribution 0.758 -1.308 0.307 1.543 sum -6.127 -2.550 13.429 14.979 Atomic orbital electron populations 1.22154 0.97071 1.01139 1.01424 1.21780 0.91669 0.98347 0.87179 0.90677 1.21182 0.85948 0.97839 0.93671 1.43875 0.98901 1.22621 1.66637 1.20787 0.92971 0.90451 0.93779 1.19026 0.96974 0.89486 1.33000 0.91694 1.24973 0.98598 0.96092 0.99504 1.70069 1.13176 1.21596 1.49587 0.86487 0.79339 0.83110 0.78514 1.21142 1.21689 1.20857 1.45689 1.64988 1.14304 1.08468 1.20234 0.77141 0.86886 0.84646 1.90603 1.52061 1.16183 1.85658 1.21190 1.01778 0.96516 0.92848 0.88275 1.22515 0.99043 0.97103 1.02153 1.20449 1.02131 0.97386 0.90138 1.19891 0.93781 0.96150 0.96471 1.21171 0.93768 0.99905 0.97219 1.21262 1.00160 0.96677 0.94993 1.21069 0.93404 0.98970 1.00170 1.21024 0.95716 1.00161 0.96168 1.20829 0.86318 1.01184 0.97833 1.98362 1.17289 1.94858 1.92945 0.92417 0.93110 0.93005 0.93439 0.93096 0.95471 0.93665 0.98652 0.93751 0.76107 0.92713 0.91047 0.91948 0.89872 0.89702 0.84810 0.85472 0.85392 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.24 2.88 -67.93 -0.20 2.05 16 3 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.75 5.36 -4.04 -0.02 2.73 16 5 N -0.60 -14.20 2.82 -181.12 -0.51 -14.71 16 6 C 0.16 4.02 9.01 59.85 0.54 4.56 16 7 C -0.26 -6.44 8.02 -15.06 -0.12 -6.56 16 8 H 0.07 1.58 7.84 -52.49 -0.41 1.17 16 9 C 0.01 0.19 5.13 -17.43 -0.09 0.11 16 10 N -0.90 -25.17 10.57 55.49 0.59 -24.59 16 11 Si 0.90 20.82 29.57 -169.99 -5.03 15.79 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 N -0.69 -13.30 4.38 -53.80 -0.24 -13.53 16 16 C 0.53 10.40 7.12 -10.98 -0.08 10.32 16 17 O -0.57 -12.72 15.58 5.56 0.09 -12.63 16 18 C -0.10 -1.70 2.71 -91.77 -0.25 -1.95 16 19 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 20 C -0.15 -2.17 7.14 37.16 0.27 -1.91 16 21 C -0.06 -0.97 4.00 -27.88 -0.11 -1.08 16 22 C -0.06 -0.84 4.99 -104.59 -0.52 -1.36 16 23 C -0.10 -1.28 9.67 -39.59 -0.38 -1.66 16 24 C -0.11 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 26 C -0.11 -1.19 9.83 -39.55 -0.39 -1.58 16 27 C -0.04 -0.44 5.19 -39.50 -0.21 -0.64 16 28 Cl -0.06 -0.77 22.31 -51.86 -1.16 -1.92 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 34 H 0.03 0.73 7.44 -51.93 -0.39 0.34 16 35 H 0.04 1.18 7.16 -51.93 -0.37 0.81 16 36 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.40 7.77 6.82 -40.82 -0.28 7.49 16 39 H 0.05 0.77 7.56 -51.93 -0.39 0.38 16 40 H 0.07 0.97 4.77 -51.93 -0.25 0.73 16 41 H 0.06 0.88 6.52 -51.93 -0.34 0.54 16 42 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16 43 H 0.08 1.39 7.82 -51.93 -0.41 0.98 16 44 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -29.85 384.88 -9.82 -39.67 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.36 Total: 8.36 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.00 Total: -2.23 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.16 Total: -52.83 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.16 Total: -1.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.85 -9.82 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569141204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.605 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds