Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47093 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99415 * 2 1 3 5 5 N 1.46505 * 109.47059 * 185.00084 * 4 2 1 6 6 C 1.46497 * 119.99899 * 269.99920 * 5 4 2 7 7 C 1.36932 * 120.00060 * 90.00441 * 5 4 2 8 8 H 1.07997 * 120.00306 * 22.01893 * 7 5 4 9 9 C 1.38815 * 119.99891 * 202.03186 * 7 5 4 10 10 N 1.31622 * 120.00132 * 11.42509 * 9 7 5 11 11 Si 1.86798 * 120.00101 * 191.43252 * 9 7 5 12 12 H 1.48502 * 109.47064 * 59.99530 * 11 9 7 13 13 H 1.48506 * 109.47265 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46979 * 299.99599 * 11 9 7 15 15 N 1.46507 * 109.47089 * 119.99765 * 2 1 3 16 16 C 1.34780 * 119.99313 * 275.00004 * 15 2 1 17 17 O 1.21278 * 120.00534 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99305 * 180.02562 * 16 15 2 19 19 H 1.09004 * 109.47294 * 59.99854 * 18 16 15 20 20 C 1.52996 * 109.47252 * 299.99456 * 18 16 15 21 21 C 1.53002 * 109.46925 * 179.97438 * 18 16 15 22 22 C 1.50700 * 109.47190 * 184.99775 * 21 18 16 23 23 C 1.38242 * 120.00449 * 99.99815 * 22 21 18 24 24 C 1.38218 * 120.01110 * 179.97438 * 23 22 21 25 25 C 1.38268 * 120.02706 * 359.95978 * 24 23 22 26 26 C 1.38191 * 120.01268 * 0.02562 * 25 24 23 27 27 C 1.38323 * 120.00684 * 280.23281 * 22 21 18 28 28 Cl 1.73606 * 120.01529 * 0.04040 * 27 22 21 29 29 H 1.09002 * 109.47059 * 60.00747 * 1 2 3 30 30 H 1.09004 * 109.46875 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47106 * 300.00608 * 1 2 3 32 32 H 1.08997 * 109.47503 * 304.99971 * 4 2 1 33 33 H 1.09004 * 109.47470 * 65.00292 * 4 2 1 34 34 H 1.09001 * 109.47110 * 94.04056 * 6 5 4 35 35 H 1.08999 * 109.47398 * 214.04417 * 6 5 4 36 36 H 1.09001 * 109.47504 * 334.04616 * 6 5 4 37 37 H 0.96996 * 119.99828 * 180.02562 * 10 9 7 38 38 H 0.96990 * 120.00299 * 95.00156 * 15 2 1 39 39 H 1.09000 * 109.46973 * 60.00210 * 20 18 16 40 40 H 1.08993 * 109.47676 * 180.02562 * 20 18 16 41 41 H 1.09004 * 109.47296 * 300.00397 * 20 18 16 42 42 H 1.08997 * 109.47431 * 64.99681 * 21 18 16 43 43 H 1.09007 * 109.46964 * 304.99632 * 21 18 16 44 44 H 1.07998 * 119.99676 * 359.97438 * 23 22 21 45 45 H 1.07999 * 119.98532 * 179.97438 * 24 23 22 46 46 H 1.07994 * 119.99270 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.00890 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3343 0.2338 -1.7613 7 6 4.0850 -1.9160 -0.6022 8 1 3.5321 -2.8384 -0.5038 9 6 5.3885 -1.8346 -0.1320 10 7 5.9844 -0.6643 -0.0435 11 14 6.2971 -3.3859 0.3750 12 1 6.3915 -4.3063 -0.7866 13 1 7.6631 -3.0309 0.8370 14 1 5.5593 -4.0539 1.4772 15 7 2.0184 -0.6906 1.1963 16 6 2.1470 -0.0180 2.3572 17 8 1.8590 1.1588 2.4114 18 6 2.6499 -0.7283 3.5875 19 1 3.6493 -1.1201 3.3980 20 6 1.7064 -1.8824 3.9316 21 6 2.7018 0.2551 4.7586 22 6 3.3191 -0.4213 5.9555 23 6 4.6475 -0.1986 6.2666 24 6 5.2136 -0.8184 7.3647 25 6 4.4516 -1.6608 8.1530 26 6 3.1235 -1.8840 7.8431 27 6 2.5579 -1.2688 6.7401 28 17 0.8916 -1.5546 6.3458 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 1.7517 -0.1585 -2.1370 34 1 4.5995 0.9472 -0.9810 35 1 5.2419 -0.2027 -2.1783 36 1 3.7823 0.7460 -2.5493 37 1 6.8953 -0.6075 0.2848 38 1 2.2491 -1.6316 1.1528 39 1 1.6697 -2.5828 3.0973 40 1 2.0697 -2.3958 4.8218 41 1 0.7070 -1.4906 4.1212 42 1 1.6911 0.5795 5.0057 43 1 3.3033 1.1204 4.4799 44 1 5.2431 0.4599 5.6517 45 1 6.2516 -0.6444 7.6072 46 1 4.8944 -2.1445 9.0110 47 1 2.5283 -2.5417 8.4590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569141204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = -13.384203 kcal Electronic energy + Delta-G solvation = -28190.529203 eV Core-core repulsion = 24399.174110 eV Total energy + Delta-G solvation = -3791.355093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17496 -40.23242 -38.09773 -37.48250 -35.99681 -35.62339 -33.22945 -32.28269 -31.67310 -30.96226 -28.03374 -27.77040 -27.35491 -25.16928 -23.63049 -23.45693 -22.39087 -21.39360 -20.74439 -18.76412 -18.28422 -17.65365 -17.17680 -16.80297 -16.73027 -16.21470 -16.17845 -15.58620 -15.46265 -15.01757 -14.92845 -14.69292 -14.50893 -14.40894 -13.94943 -13.73959 -13.52073 -13.31939 -13.26217 -13.07828 -12.83893 -12.67621 -12.63737 -12.55491 -12.43975 -12.32865 -12.13211 -11.98151 -11.96098 -11.93879 -11.81664 -11.65895 -11.00474 -10.59103 -10.55029 -9.85909 -9.76854 -9.56045 -8.75052 -7.75728 -5.22779 0.17786 0.29410 1.17078 1.47936 1.50931 1.55578 1.83721 2.45521 2.54332 2.70079 3.39418 3.61362 3.74546 3.76395 3.86715 4.00969 4.04189 4.16486 4.20725 4.35164 4.40537 4.45533 4.51639 4.57322 4.68335 4.73058 4.76454 4.81611 4.85685 4.89890 4.92450 4.98548 5.01594 5.13765 5.20033 5.24872 5.28637 5.34592 5.41493 5.44727 5.51048 5.66927 5.74650 5.83262 5.87340 6.36537 6.82173 7.19212 7.47821 7.91445 8.37834 9.27817 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.004277 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.839610 B = 6545.120829 C = 8033.697998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 H 0.038 0.962 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.180 3.820 7 C -0.247 4.247 8 H 0.079 0.921 9 C -0.045 4.045 10 N -0.935 5.935 11 Si 0.952 3.048 12 H -0.282 1.282 13 H -0.304 1.304 14 H -0.268 1.268 15 N -0.685 5.685 16 C 0.517 3.483 17 O -0.598 6.598 18 C -0.095 4.095 19 H 0.082 0.918 20 C -0.141 4.141 21 C -0.054 4.054 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.109 4.109 26 C -0.111 4.111 27 C -0.045 4.045 28 Cl -0.065 7.065 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.072 0.928 34 H -0.009 1.009 35 H 0.020 0.980 36 H 0.026 0.974 37 H 0.242 0.758 38 H 0.405 0.595 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.151 0.849 46 H 0.163 0.837 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -4.427 14.281 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.056 0.944 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.034 3.966 7 C -0.377 4.377 8 H 0.096 0.904 9 C -0.241 4.241 10 N -0.582 5.582 11 Si 0.782 3.218 12 H -0.209 1.209 13 H -0.231 1.231 14 H -0.194 1.194 15 N -0.333 5.333 16 C 0.304 3.696 17 O -0.481 6.481 18 C -0.116 4.116 19 H 0.100 0.900 20 C -0.198 4.198 21 C -0.092 4.092 22 C -0.082 4.082 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.072 4.072 28 Cl -0.036 7.036 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.009 0.991 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.241 0.759 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.168 0.832 46 H 0.180 0.820 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.035 -3.614 14.264 16.766 hybrid contribution 1.075 -0.548 -0.074 1.209 sum -6.960 -4.162 14.190 16.344 Atomic orbital electron populations 1.22018 0.93890 1.02594 1.01914 1.21698 0.94044 0.96116 0.86878 0.94378 1.21376 0.83315 0.99325 0.94498 1.44106 1.00799 1.22027 1.66439 1.20486 0.92796 0.89963 0.93313 1.19379 0.96874 0.90282 1.31183 0.90354 1.25629 0.99697 0.98214 1.00515 1.70262 1.12855 1.23523 1.51559 0.85565 0.77605 0.80234 0.78444 1.20861 1.23140 1.19382 1.45760 1.64703 1.14289 1.08592 1.20809 0.76579 0.86635 0.85599 1.90577 1.53591 1.17648 1.86257 1.21144 1.01130 0.97336 0.91977 0.89961 1.22483 0.98516 0.96075 1.02722 1.20266 1.01581 0.96552 0.90764 1.19739 0.94516 0.97551 0.96443 1.21273 0.93572 1.00684 0.98369 1.21569 1.01411 0.96062 0.94039 1.21499 0.92891 0.97823 1.00487 1.21365 0.96383 0.99788 0.95455 1.20942 0.86221 1.01512 0.98507 1.98354 1.17386 1.94822 1.93069 0.90161 0.91075 0.94316 0.91437 0.90971 0.99085 0.96105 0.95590 0.94830 0.75933 0.92295 0.89938 0.91562 0.90404 0.91956 0.85558 0.83170 0.81957 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.48 71.98 0.68 -3.55 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.04 1.71 7.58 -2.39 -0.02 1.69 16 4 C 0.14 5.22 5.36 86.38 0.46 5.68 16 5 N -0.61 -28.72 2.82 -726.94 -2.05 -30.77 16 6 C 0.18 8.90 9.01 127.77 1.15 10.05 16 7 C -0.25 -12.29 8.02 84.03 0.67 -11.62 16 8 H 0.08 3.65 7.84 -2.91 -0.02 3.63 16 9 C -0.05 -2.40 5.13 84.86 0.44 -1.96 16 10 N -0.94 -54.06 10.57 21.65 0.23 -53.83 16 11 Si 0.95 42.87 29.57 68.60 2.03 44.90 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 N -0.69 -26.62 4.38 -442.52 -1.94 -28.55 16 16 C 0.52 21.10 7.12 87.66 0.62 21.72 16 17 O -0.60 -28.16 15.58 -3.02 -0.05 -28.20 16 18 C -0.09 -3.25 2.71 -11.54 -0.03 -3.28 16 19 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 20 C -0.14 -3.96 7.14 71.98 0.51 -3.45 16 21 C -0.05 -1.73 4.00 29.85 0.12 -1.61 16 22 C -0.08 -2.22 4.99 -19.84 -0.10 -2.32 16 23 C -0.12 -3.02 9.67 22.27 0.22 -2.81 16 24 C -0.11 -2.16 10.05 22.27 0.22 -1.94 16 25 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.11 -2.06 9.83 22.29 0.22 -1.84 16 27 C -0.05 -1.07 5.19 22.32 0.12 -0.96 16 28 Cl -0.07 -1.50 22.31 -2.72 -0.06 -1.56 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 33 H 0.07 2.37 7.86 -2.39 -0.02 2.35 16 34 H -0.01 -0.52 7.44 -2.39 -0.02 -0.54 16 35 H 0.02 1.09 7.16 -2.39 -0.02 1.08 16 36 H 0.03 1.09 7.85 -2.39 -0.02 1.08 16 37 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.40 15.32 6.82 -92.72 -0.63 14.69 16 39 H 0.06 1.59 7.56 -2.39 -0.02 1.57 16 40 H 0.08 2.16 4.77 -2.39 -0.01 2.14 16 41 H 0.07 1.81 6.52 -2.39 -0.02 1.80 16 42 H 0.08 2.53 7.37 -2.39 -0.02 2.51 16 43 H 0.06 2.22 7.82 -2.38 -0.02 2.20 16 44 H 0.13 3.22 8.04 -2.91 -0.02 3.19 16 45 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -66.49 384.88 4.16 -62.33 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.33 Total: 30.50 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.66 Total: 5.19 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.76 Total: -113.15 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.06 Total: -1.56 kcal Total: -66.49 4.16 -62.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569141204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.950 kcal (2) G-P(sol) polarization free energy of solvation -66.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds