Wall clock time and date at job start Tue Mar 31 2020 20:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46865 * 2 1 4 4 C 1.53000 * 109.46683 * 240.00170 * 2 1 3 5 5 C 1.50697 * 109.47121 * 65.00001 * 4 2 1 6 6 C 1.38240 * 120.00442 * 264.71815 * 5 4 2 7 7 C 1.38222 * 120.00927 * 179.76789 * 6 5 4 8 8 C 1.38259 * 120.02963 * 0.51512 * 7 6 5 9 9 C 1.38198 * 120.01439 * 359.74020 * 8 7 6 10 10 C 1.38334 * 120.01062 * 84.99780 * 5 4 2 11 11 Cl 1.73597 * 120.00968 * 359.95249 * 10 5 4 12 12 C 1.50695 * 109.47286 * 120.00248 * 2 1 3 13 13 O 1.21280 * 120.00291 * 120.00147 * 12 2 1 14 14 N 1.34779 * 119.99859 * 299.99694 * 12 2 1 15 15 C 1.46505 * 119.99511 * 179.97438 * 14 12 2 16 16 H 1.08990 * 109.47451 * 325.00281 * 15 14 12 17 17 C 1.53001 * 109.46783 * 85.00678 * 15 14 12 18 18 C 1.53009 * 109.46625 * 204.99991 * 15 14 12 19 19 N 1.46499 * 109.46951 * 55.00584 * 18 15 14 20 20 C 1.46505 * 119.99886 * 269.99671 * 19 18 15 21 21 C 1.36931 * 119.99822 * 89.99690 * 19 18 15 22 22 H 1.08001 * 120.00563 * 20.37553 * 21 19 18 23 23 C 1.38819 * 119.99861 * 200.36973 * 21 19 18 24 24 N 1.31615 * 119.99573 * 15.02582 * 23 21 19 25 25 Si 1.86794 * 120.00189 * 195.02422 * 23 21 19 26 26 H 1.48508 * 109.47390 * 85.00196 * 25 23 21 27 27 H 1.48498 * 109.47427 * 205.00073 * 25 23 21 28 28 H 1.48504 * 109.46993 * 325.00325 * 25 23 21 29 29 H 1.08995 * 109.47496 * 60.00253 * 1 2 3 30 30 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47013 * 299.99343 * 1 2 3 32 32 H 1.09001 * 109.46956 * 184.99670 * 4 2 1 33 33 H 1.09001 * 109.47635 * 304.99742 * 4 2 1 34 34 H 1.07996 * 119.99756 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.98521 * 180.27164 * 7 6 5 36 36 H 1.08002 * 119.99795 * 179.76955 * 8 7 6 37 37 H 1.07992 * 120.00938 * 179.97438 * 9 8 7 38 38 H 0.96998 * 119.99808 * 0.02562 * 14 12 2 39 39 H 1.08998 * 109.47757 * 59.99595 * 17 15 14 40 40 H 1.09004 * 109.46779 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.46843 * 299.99034 * 17 15 14 42 42 H 1.09002 * 109.46404 * 175.00426 * 18 15 14 43 43 H 1.08998 * 109.46934 * 295.00501 * 18 15 14 44 44 H 1.09001 * 109.47007 * 95.15859 * 20 19 18 45 45 H 1.09004 * 109.47021 * 215.15810 * 20 19 18 46 46 H 1.09004 * 109.46677 * 335.15632 * 20 19 18 47 47 H 0.97006 * 119.99965 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 0.4889 -0.2774 -3.1632 7 6 0.1206 0.4395 -4.2861 8 6 0.9097 1.4846 -4.7294 9 6 2.0647 1.8166 -4.0469 10 6 2.4311 1.1027 -2.9197 11 17 3.8814 1.5195 -2.0614 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6506 16 1 2.2311 -2.0137 3.4611 17 6 3.5975 -0.4361 3.9947 18 6 1.2507 -0.6615 4.8218 19 7 -0.1155 -1.0355 4.4477 20 6 -0.9987 -0.0498 3.8195 21 6 -0.5668 -2.3063 4.6851 22 1 -0.0734 -2.9264 5.4188 23 6 -1.6588 -2.7975 3.9827 24 7 -2.0762 -2.1790 2.8985 25 14 -2.5357 -4.3363 4.5763 26 1 -3.5429 -3.9672 5.6034 27 1 -3.2151 -4.9922 3.4303 28 1 -1.5464 -5.2730 5.1674 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.1262 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2953 34 1 -0.1257 -1.0963 -2.8198 35 1 -0.7820 0.1807 -4.8197 36 1 0.6234 2.0420 -5.6091 37 1 2.6812 2.6327 -4.3935 38 1 1.1489 0.5385 2.5435 39 1 3.5613 0.6367 4.1842 40 1 3.9604 -0.9499 4.8849 41 1 4.2700 -0.6352 3.1604 42 1 1.5631 -1.2455 5.6876 43 1 1.2823 0.3996 5.0687 44 1 -0.9527 -0.1590 2.7359 45 1 -2.0223 -0.2113 4.1578 46 1 -0.6784 0.9544 4.0975 47 1 -2.8390 -2.5225 2.4075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569141205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:31 Heat of formation + Delta-G solvation = -11.943777 kcal Electronic energy + Delta-G solvation = -27931.442031 eV Core-core repulsion = 24140.149400 eV Total energy + Delta-G solvation = -3791.292631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.94614 -39.07037 -36.50096 -36.43694 -34.77407 -33.93691 -31.59397 -30.87652 -30.75033 -29.69335 -26.61601 -26.14415 -25.59965 -23.80878 -22.78060 -21.86127 -21.07331 -20.02670 -19.31532 -17.19988 -16.80418 -16.58777 -15.81300 -15.53960 -15.30176 -14.87857 -14.58994 -14.06950 -13.97881 -13.79591 -13.52910 -13.31300 -13.09584 -12.96414 -12.67736 -12.39683 -12.15636 -11.91355 -11.80189 -11.62684 -11.55555 -11.45375 -11.39893 -11.14634 -10.87969 -10.82538 -10.76153 -10.70499 -10.65589 -10.50540 -10.16736 -9.94099 -9.81832 -9.11259 -9.00132 -8.72628 -8.56408 -8.27395 -6.75989 -5.71892 -3.13924 1.01848 1.12479 2.07053 3.31285 3.39962 3.46597 3.46767 3.47225 3.88883 4.52257 4.62924 4.65561 4.82919 5.05720 5.13714 5.18786 5.31270 5.34410 5.38983 5.49464 5.54844 5.65637 5.75330 5.76570 5.87589 5.92298 6.03794 6.06792 6.12228 6.13127 6.16449 6.25901 6.28758 6.38272 6.41223 6.50529 6.56938 6.65117 6.67111 6.69096 6.92970 7.26353 7.34206 7.67669 7.82114 8.22776 8.38686 8.93213 9.24054 9.87265 10.34536 11.33419 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013386 B = 0.003448 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.193710 B = 8119.289406 C = 9491.802720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.066 4.066 5 C -0.061 4.061 6 C -0.101 4.101 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.112 4.112 10 C -0.036 4.036 11 Cl -0.069 7.069 12 C 0.524 3.476 13 O -0.554 6.554 14 N -0.698 5.698 15 C 0.117 3.883 16 H 0.084 0.916 17 C -0.159 4.159 18 C 0.143 3.857 19 N -0.596 5.596 20 C 0.159 3.841 21 C -0.254 4.254 22 H 0.068 0.932 23 C 0.005 3.995 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.394 0.606 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.042 0.958 46 H -0.007 1.007 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 10.740 -12.574 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.104 4.104 5 C -0.062 4.062 6 C -0.119 4.119 7 C -0.132 4.132 8 C -0.136 4.136 9 C -0.130 4.130 10 C -0.062 4.062 11 Cl -0.040 7.040 12 C 0.310 3.690 13 O -0.432 6.432 14 N -0.346 5.346 15 C 0.009 3.991 16 H 0.102 0.898 17 C -0.218 4.218 18 C 0.014 3.986 19 N -0.319 5.319 20 C 0.014 3.986 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.207 1.207 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.228 0.772 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.012 0.988 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.373 10.026 -12.643 17.740 hybrid contribution -0.737 -0.437 0.256 0.894 sum 6.636 9.589 -12.386 17.012 Atomic orbital electron populations 1.21810 0.91945 1.03849 1.02169 1.21182 0.98286 1.00068 0.92610 0.89381 1.20475 1.02601 0.98269 0.89024 1.19869 0.94265 0.94896 0.97193 1.21166 0.95641 1.00142 0.94936 1.21262 0.99765 0.95622 0.96568 1.21070 0.94530 0.97912 1.00048 1.21014 0.97719 0.99910 0.94402 1.20872 0.90717 0.98615 0.96015 1.98371 1.36179 1.92670 1.76745 1.20288 0.79784 0.84294 0.84657 1.90632 1.39199 1.26493 1.86912 1.45768 1.52282 1.31313 1.05283 1.21833 0.92457 0.98130 0.86645 0.89758 1.22151 0.97882 1.00538 1.01213 1.21185 0.85476 0.97663 0.94230 1.43895 1.06921 1.09651 1.71388 1.20910 0.93940 0.86446 0.97259 1.19176 1.12141 0.90895 1.16158 0.91427 1.24892 1.00583 0.98032 0.95812 1.70054 1.27389 1.41195 1.16132 0.86319 0.79795 0.83047 0.77638 1.21627 1.21870 1.20670 0.92413 0.91155 0.91494 0.89609 0.89777 0.84797 0.85470 0.85403 0.85223 0.77215 0.93293 0.92229 0.93014 0.92409 0.94102 0.94584 0.93919 0.98814 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.74 37.16 0.32 -1.84 16 2 C -0.10 -1.52 2.71 -91.77 -0.25 -1.77 16 3 H 0.09 1.22 7.94 -51.93 -0.41 0.81 16 4 C -0.07 -0.96 3.68 -27.88 -0.10 -1.06 16 5 C -0.06 -0.76 4.56 -104.59 -0.48 -1.24 16 6 C -0.10 -1.12 8.37 -39.59 -0.33 -1.45 16 7 C -0.11 -1.06 10.05 -39.58 -0.40 -1.46 16 8 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 9 C -0.11 -1.10 9.83 -39.55 -0.39 -1.48 16 10 C -0.04 -0.42 6.31 -39.50 -0.25 -0.67 16 11 Cl -0.07 -0.82 27.20 -51.86 -1.41 -2.23 16 12 C 0.52 9.90 7.12 -10.99 -0.08 9.82 16 13 O -0.55 -12.32 15.58 5.56 0.09 -12.24 16 14 N -0.70 -12.69 4.32 -53.80 -0.23 -12.92 16 15 C 0.12 2.21 2.88 -67.92 -0.20 2.01 16 16 H 0.08 1.93 7.58 -51.93 -0.39 1.54 16 17 C -0.16 -2.46 9.48 37.16 0.35 -2.11 16 18 C 0.14 2.76 5.33 -4.04 -0.02 2.74 16 19 N -0.60 -14.11 2.78 -181.11 -0.50 -14.62 16 20 C 0.16 3.60 7.60 59.85 0.45 4.06 16 21 C -0.25 -6.82 9.68 -15.06 -0.15 -6.96 16 22 H 0.07 1.81 7.86 -52.49 -0.41 1.39 16 23 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 24 N -0.90 -25.12 10.67 55.49 0.59 -24.53 16 25 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 29 H 0.06 0.77 6.53 -51.93 -0.34 0.43 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.08 6.25 -51.93 -0.32 0.75 16 32 H 0.09 1.32 6.94 -51.93 -0.36 0.96 16 33 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.39 6.65 6.60 -40.82 -0.27 6.38 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 43 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 44 H 0.04 0.85 5.66 -51.93 -0.29 0.55 16 45 H 0.04 1.07 7.22 -51.93 -0.37 0.70 16 46 H -0.01 -0.13 7.83 -51.93 -0.41 -0.54 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -30.61 390.36 -9.95 -40.57 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.35 Total: 6.03 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.99 Total: -2.78 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.14 Total: -52.07 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.41 Total: -2.23 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.61 -9.95 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569141205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.623 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds