Wall clock time and date at job start Tue Mar 31 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47130 * 2 1 4 4 C 1.50693 * 109.47347 * 120.00546 * 2 1 3 5 5 O 1.21283 * 120.00631 * 120.00154 * 4 2 1 6 6 N 1.34782 * 119.99870 * 300.00232 * 4 2 1 7 7 C 1.46501 * 120.00096 * 179.97438 * 6 4 2 8 8 C 1.50694 * 109.47405 * 179.97438 * 7 6 4 9 9 C 1.38258 * 120.02332 * 270.22002 * 8 7 6 10 10 C 1.38143 * 119.96364 * 180.23476 * 9 8 7 11 11 C 1.38449 * 120.10356 * 359.52277 * 10 9 8 12 12 C 1.38065 * 119.93194 * 0.25758 * 11 10 9 13 13 C 1.38148 * 120.01921 * 89.99621 * 8 7 6 14 14 C 1.50781 * 108.86152 * 179.97438 * 12 11 10 15 15 N 1.46634 * 107.70246 * 0.02562 * 14 12 11 16 16 C 1.36929 * 126.56839 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00426 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99648 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00072 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46834 * 59.99976 * 20 18 16 22 22 H 1.48492 * 109.46918 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46892 * 300.00105 * 20 18 16 24 24 C 1.46643 * 106.87045 * 359.97438 * 15 14 12 25 25 C 1.53004 * 109.47279 * 240.00564 * 2 1 3 26 26 C 1.53004 * 109.47253 * 64.99558 * 25 2 1 27 27 F 1.39899 * 109.47403 * 184.99836 * 25 2 1 28 28 F 1.39900 * 109.46857 * 304.99933 * 25 2 1 29 29 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47390 * 299.99010 * 1 2 3 31 31 H 1.08994 * 109.47342 * 59.99738 * 1 2 3 32 32 H 0.96997 * 120.00206 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.47248 * 59.99819 * 7 6 4 34 34 H 1.09003 * 109.47210 * 300.00035 * 7 6 4 35 35 H 1.07998 * 120.01283 * 0.03461 * 9 8 7 36 36 H 1.08002 * 119.95132 * 179.80781 * 10 9 8 37 37 H 1.08002 * 119.94394 * 0.03126 * 13 8 7 38 38 H 1.09000 * 109.81260 * 119.54868 * 14 12 11 39 39 H 1.08998 * 109.81519 * 240.45467 * 14 12 11 40 40 H 0.97001 * 119.99333 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.80797 * 240.45438 * 24 15 14 42 42 H 1.08999 * 109.81012 * 119.54608 * 24 15 14 43 43 H 1.09006 * 109.46497 * 60.00209 * 26 25 2 44 44 H 1.08997 * 109.47047 * 179.97438 * 26 25 2 45 45 H 1.08997 * 109.46920 * 300.00341 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1946 -0.9411 3.6506 8 6 1.6929 -0.2305 4.8811 9 6 2.4383 0.7892 5.4433 10 6 1.9796 1.4366 6.5742 11 6 0.7695 1.0726 7.1400 12 6 0.0230 0.0573 6.5759 13 6 0.4856 -0.5944 5.4455 14 6 -1.2350 -0.1303 7.3856 15 7 -1.2073 0.8407 8.4840 16 6 -2.1615 1.0044 9.4524 17 1 -3.0431 0.3805 9.4529 18 6 -1.9953 1.9716 10.4342 19 7 -0.9202 2.7309 10.4345 20 14 -3.2974 2.1954 11.7548 21 1 -3.4499 0.9311 12.5188 22 1 -2.8856 3.2846 12.6763 23 1 -4.5919 2.5487 11.1187 24 6 0.0385 1.6020 8.3477 25 6 2.0400 -0.7211 -1.2493 26 6 1.6352 0.0691 -2.4954 27 9 3.4343 -0.8215 -1.1934 28 9 1.4822 -2.0028 -1.3083 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5387 2.5436 33 1 3.2847 -0.9416 3.6508 34 1 1.8309 -1.9687 3.6504 35 1 3.3803 1.0773 5.0005 36 1 2.5635 2.2310 7.0150 37 1 -0.0980 -1.3889 5.0043 38 1 -2.1083 0.0473 6.7580 39 1 -1.2679 -1.1428 7.7879 40 1 -0.8043 3.4070 11.1204 41 1 0.6520 1.4691 9.2388 42 1 -0.1879 2.6590 8.2081 43 1 2.0699 1.0677 -2.4493 44 1 1.9990 -0.4444 -3.3853 45 1 0.5489 0.1473 -2.5390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570313652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:12 Heat of formation + Delta-G solvation = -87.462180 kcal Electronic energy + Delta-G solvation = -28664.532710 eV Core-core repulsion = 24318.168675 eV Total energy + Delta-G solvation = -4346.364035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.12325 -47.09579 -40.18407 -39.49077 -36.45092 -35.14501 -34.55753 -32.30299 -31.28999 -30.33751 -29.63181 -27.51102 -26.16955 -25.77523 -24.49005 -22.25355 -21.99344 -20.50086 -20.45602 -20.07425 -17.91892 -17.79531 -17.09341 -17.06127 -16.07220 -15.82772 -15.60508 -15.50587 -14.81557 -14.61174 -14.35963 -14.24382 -14.12622 -13.92920 -13.62576 -13.36673 -13.26212 -13.12630 -13.08729 -13.05623 -12.64433 -12.49169 -12.27376 -12.05042 -11.99356 -11.88675 -11.72253 -11.59888 -11.16669 -11.11937 -10.85798 -10.53557 -10.28717 -10.20737 -10.06697 -9.83613 -9.26973 -8.99402 -8.47258 -8.07249 -6.90453 -5.85894 -3.19356 1.51176 1.69198 2.35466 2.88916 3.35020 3.35071 3.38940 3.40437 3.67907 3.99390 4.00241 4.16020 4.37000 4.48906 4.59195 4.63635 4.70343 4.92624 4.99773 5.12511 5.17662 5.20428 5.24827 5.26751 5.38925 5.39404 5.46103 5.53047 5.61719 5.65259 5.80745 5.97379 6.05988 6.18061 6.44623 6.48906 6.50835 6.71322 6.73736 7.00179 7.23054 7.27764 7.30631 7.47588 7.64029 7.94564 8.08739 9.06818 9.66678 10.33536 11.28169 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.001989 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.113351 B =14074.537736 C =14453.629233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.158 4.158 3 H 0.125 0.875 4 C 0.515 3.485 5 O -0.524 6.524 6 N -0.719 5.719 7 C 0.170 3.830 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.112 4.112 11 C -0.080 4.080 12 C -0.106 4.106 13 C -0.083 4.083 14 C 0.175 3.825 15 N -0.601 5.601 16 C -0.227 4.227 17 H 0.083 0.917 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.919 3.081 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.205 3.795 25 C 0.309 3.691 26 C -0.197 4.197 27 F -0.191 7.191 28 F -0.192 7.192 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.256 0.744 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -2.043 -23.366 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 H 0.143 0.857 4 C 0.300 3.700 5 O -0.400 6.400 6 N -0.371 5.371 7 C 0.048 3.952 8 C -0.133 4.133 9 C -0.122 4.122 10 C -0.130 4.130 11 C -0.081 4.081 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.050 3.950 15 N -0.327 5.327 16 C -0.355 4.355 17 H 0.101 0.899 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.749 3.251 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.081 3.919 25 C 0.272 3.728 26 C -0.254 4.254 27 F -0.172 7.172 28 F -0.173 7.173 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.833 -2.673 -23.219 24.089 hybrid contribution -0.744 0.492 0.860 1.238 sum 5.090 -2.181 -22.360 23.035 Atomic orbital electron populations 1.21852 0.90345 1.04352 1.04093 1.22489 1.00284 1.02447 0.92773 0.85714 1.20141 0.80640 0.84840 0.84413 1.90792 1.37034 1.25615 1.86512 1.46092 1.53724 1.32241 1.05074 1.20125 0.99051 0.95388 0.80661 1.19452 0.96368 0.99544 0.97948 1.20826 0.99344 0.95880 0.96131 1.20504 0.95642 1.00739 0.96165 1.21561 0.93777 0.95153 0.97640 1.20727 0.97892 0.96656 0.95417 1.20306 0.95203 0.99571 0.95163 1.19707 0.92023 0.94166 0.89132 1.43950 1.21082 1.38526 1.29163 1.18931 0.98380 1.15635 1.02537 0.89891 1.24844 0.98109 0.98218 0.99167 1.69910 1.27177 1.24007 1.35931 0.86094 0.80503 0.77455 0.81093 1.20975 1.21474 1.20992 1.19747 0.86298 0.95435 0.90438 1.20624 0.75352 0.80677 0.96138 1.22849 1.04677 1.01652 0.96249 1.93049 1.30303 1.96431 1.97409 1.93025 1.84901 1.42060 1.97339 0.90777 0.90410 0.90440 0.76210 0.90718 0.90717 0.86319 0.86090 0.86528 0.94606 0.94566 0.93384 0.91751 0.91764 0.89135 0.89663 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.68 37.16 0.32 -0.51 16 2 C -0.16 -1.20 2.41 -91.77 -0.22 -1.42 16 3 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 4 C 0.52 5.83 6.93 -10.99 -0.08 5.76 16 5 O -0.52 -8.23 14.82 5.55 0.08 -8.15 16 6 N -0.72 -7.16 5.44 -61.47 -0.33 -7.50 16 7 C 0.17 1.95 5.80 -5.20 -0.03 1.92 16 8 C -0.13 -1.72 5.25 -104.65 -0.55 -2.27 16 9 C -0.10 -1.37 9.70 -39.61 -0.38 -1.76 16 10 C -0.11 -1.78 10.05 -39.54 -0.40 -2.18 16 11 C -0.08 -1.56 6.22 -104.57 -0.65 -2.21 16 12 C -0.11 -1.95 6.22 -104.57 -0.65 -2.60 16 13 C -0.08 -1.23 9.70 -39.54 -0.38 -1.61 16 14 C 0.18 3.66 7.25 -5.08 -0.04 3.63 16 15 N -0.60 -15.28 3.41 -175.67 -0.60 -15.88 16 16 C -0.23 -6.20 10.32 -15.06 -0.16 -6.35 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -26.32 10.44 55.49 0.58 -25.74 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.21 4.93 5.39 -5.08 -0.03 4.90 16 25 C 0.31 2.83 1.50 -26.73 -0.04 2.79 16 26 C -0.20 -0.97 9.14 37.16 0.34 -0.63 16 27 F -0.19 -2.34 15.82 2.25 0.04 -2.30 16 28 F -0.19 -2.27 15.75 2.25 0.04 -2.24 16 29 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 30 H 0.08 0.37 7.56 -51.93 -0.39 -0.02 16 31 H 0.08 0.26 6.56 -51.93 -0.34 -0.08 16 32 H 0.40 3.25 7.88 -40.82 -0.32 2.92 16 33 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 42 H 0.06 1.68 7.49 -51.93 -0.39 1.29 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.30 6.56 -51.93 -0.34 -0.04 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -33.34 375.04 -8.95 -42.29 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.34 Total: 0.23 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.04 Total: -2.83 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.35 Total: -49.11 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.34 -8.95 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570313652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.172 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds