Wall clock time and date at job start Tue Mar 31 2020 21:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47130 * 2 1 4 4 C 1.50693 * 109.47347 * 120.00546 * 2 1 3 5 5 O 1.21283 * 120.00631 * 120.00154 * 4 2 1 6 6 N 1.34782 * 119.99870 * 300.00232 * 4 2 1 7 7 C 1.46501 * 120.00096 * 179.97438 * 6 4 2 8 8 C 1.50694 * 109.47405 * 179.97438 * 7 6 4 9 9 C 1.38258 * 120.02332 * 270.22002 * 8 7 6 10 10 C 1.38143 * 119.96364 * 180.23476 * 9 8 7 11 11 C 1.38449 * 120.10356 * 359.52277 * 10 9 8 12 12 C 1.38065 * 119.93194 * 0.25758 * 11 10 9 13 13 C 1.38148 * 120.01921 * 89.99621 * 8 7 6 14 14 C 1.50781 * 108.86152 * 179.97438 * 12 11 10 15 15 N 1.46634 * 107.70246 * 0.02562 * 14 12 11 16 16 C 1.36929 * 126.56839 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00426 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99648 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00072 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46834 * 59.99976 * 20 18 16 22 22 H 1.48492 * 109.46918 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46892 * 300.00105 * 20 18 16 24 24 C 1.46643 * 106.87045 * 359.97438 * 15 14 12 25 25 C 1.53004 * 109.47279 * 240.00564 * 2 1 3 26 26 C 1.53004 * 109.47253 * 64.99558 * 25 2 1 27 27 F 1.39899 * 109.47403 * 184.99836 * 25 2 1 28 28 F 1.39900 * 109.46857 * 304.99933 * 25 2 1 29 29 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47390 * 299.99010 * 1 2 3 31 31 H 1.08994 * 109.47342 * 59.99738 * 1 2 3 32 32 H 0.96997 * 120.00206 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.47248 * 59.99819 * 7 6 4 34 34 H 1.09003 * 109.47210 * 300.00035 * 7 6 4 35 35 H 1.07998 * 120.01283 * 0.03461 * 9 8 7 36 36 H 1.08002 * 119.95132 * 179.80781 * 10 9 8 37 37 H 1.08002 * 119.94394 * 0.03126 * 13 8 7 38 38 H 1.09000 * 109.81260 * 119.54868 * 14 12 11 39 39 H 1.08998 * 109.81519 * 240.45467 * 14 12 11 40 40 H 0.97001 * 119.99333 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.80797 * 240.45438 * 24 15 14 42 42 H 1.08999 * 109.81012 * 119.54608 * 24 15 14 43 43 H 1.09006 * 109.46497 * 60.00209 * 26 25 2 44 44 H 1.08997 * 109.47047 * 179.97438 * 26 25 2 45 45 H 1.08997 * 109.46920 * 300.00341 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1946 -0.9411 3.6506 8 6 1.6929 -0.2305 4.8811 9 6 2.4383 0.7892 5.4433 10 6 1.9796 1.4366 6.5742 11 6 0.7695 1.0726 7.1400 12 6 0.0230 0.0573 6.5759 13 6 0.4856 -0.5944 5.4455 14 6 -1.2350 -0.1303 7.3856 15 7 -1.2073 0.8407 8.4840 16 6 -2.1615 1.0044 9.4524 17 1 -3.0431 0.3805 9.4529 18 6 -1.9953 1.9716 10.4342 19 7 -0.9202 2.7309 10.4345 20 14 -3.2974 2.1954 11.7548 21 1 -3.4499 0.9311 12.5188 22 1 -2.8856 3.2846 12.6763 23 1 -4.5919 2.5487 11.1187 24 6 0.0385 1.6020 8.3477 25 6 2.0400 -0.7211 -1.2493 26 6 1.6352 0.0691 -2.4954 27 9 3.4343 -0.8215 -1.1934 28 9 1.4822 -2.0028 -1.3083 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5387 2.5436 33 1 3.2847 -0.9416 3.6508 34 1 1.8309 -1.9687 3.6504 35 1 3.3803 1.0773 5.0005 36 1 2.5635 2.2310 7.0150 37 1 -0.0980 -1.3889 5.0043 38 1 -2.1083 0.0473 6.7580 39 1 -1.2679 -1.1428 7.7879 40 1 -0.8043 3.4070 11.1204 41 1 0.6520 1.4691 9.2388 42 1 -0.1879 2.6590 8.2081 43 1 2.0699 1.0677 -2.4493 44 1 1.9990 -0.4444 -3.3853 45 1 0.5489 0.1473 -2.5390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570313652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:11 Heat of formation + Delta-G solvation = -108.063794 kcal Electronic energy + Delta-G solvation = -28665.426063 eV Core-core repulsion = 24318.168675 eV Total energy + Delta-G solvation = -4347.257388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87072 -47.88020 -41.29303 -40.65897 -37.91462 -35.86874 -35.65537 -34.07850 -32.52321 -31.49124 -30.65576 -28.91820 -27.70450 -26.59570 -25.75580 -23.63991 -22.86538 -22.11038 -21.49794 -21.09235 -19.00363 -18.71396 -18.50104 -17.83524 -17.22069 -16.82507 -16.65752 -16.55367 -16.16573 -16.06817 -15.95851 -15.51753 -15.14862 -14.78119 -14.74826 -14.50903 -14.28757 -14.02431 -13.79674 -13.53894 -13.52173 -13.47573 -13.42948 -13.32375 -13.06882 -13.04590 -12.95860 -12.85509 -12.66907 -12.61060 -12.15902 -11.99358 -11.83339 -11.75794 -11.64764 -11.02655 -10.85405 -10.16839 -9.73245 -9.59476 -8.85683 -7.93844 -5.30781 0.25277 0.44100 1.45866 1.49908 1.52771 1.56194 2.06439 2.44633 2.74296 2.81622 3.16580 3.28492 3.44244 3.45750 3.47376 3.53278 3.78284 3.93685 3.96465 4.11195 4.12790 4.21425 4.32324 4.49632 4.61128 4.65125 4.71378 4.75863 4.76818 4.79016 4.81853 4.83452 4.96344 5.06129 5.16713 5.26610 5.29095 5.31002 5.32760 5.43973 5.51346 5.55511 5.85718 6.03199 6.09341 6.44547 6.99967 7.13956 7.64932 8.32676 9.19095 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.001989 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.113351 B =14074.537736 C =14453.629233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 H 0.159 0.841 4 C 0.510 3.490 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.175 3.825 8 C -0.108 4.108 9 C -0.087 4.087 10 C -0.110 4.110 11 C -0.111 4.111 12 C -0.116 4.116 13 C -0.075 4.075 14 C 0.171 3.829 15 N -0.625 5.625 16 C -0.246 4.246 17 H 0.090 0.910 18 C -0.065 4.065 19 N -0.952 5.952 20 Si 0.988 3.012 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.221 3.779 25 C 0.289 3.711 26 C -0.189 4.189 27 F -0.215 7.215 28 F -0.214 7.214 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.251 0.749 41 H 0.023 0.977 42 H 0.026 0.974 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -1.778 -25.793 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 H 0.176 0.824 4 C 0.297 3.703 5 O -0.453 6.453 6 N -0.361 5.361 7 C 0.052 3.948 8 C -0.108 4.108 9 C -0.105 4.105 10 C -0.128 4.128 11 C -0.112 4.112 12 C -0.116 4.116 13 C -0.094 4.094 14 C 0.046 3.954 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.815 3.185 21 H -0.201 1.201 22 H -0.219 1.219 23 H -0.199 1.199 24 C 0.096 3.904 25 C 0.252 3.748 26 C -0.247 4.247 27 F -0.196 7.196 28 F -0.196 7.196 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.253 0.747 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.627 -2.406 -25.669 26.388 hybrid contribution -0.622 0.339 1.513 1.671 sum 5.005 -2.067 -24.155 24.755 Atomic orbital electron populations 1.21910 0.88589 1.03781 1.06135 1.22587 1.01521 1.03210 0.89923 0.82389 1.20819 0.79682 0.84270 0.85531 1.90776 1.39353 1.27918 1.87226 1.45951 1.53432 1.32331 1.04368 1.20015 0.99301 0.95153 0.80343 1.19595 0.95094 0.98422 0.97713 1.21146 1.00203 0.94684 0.94511 1.20683 0.94292 1.01110 0.96737 1.21198 0.95840 0.97021 0.97123 1.20561 0.96831 0.97503 0.96754 1.20484 0.95848 0.99385 0.93657 1.19807 0.93987 0.93096 0.88474 1.44258 1.21177 1.39681 1.30029 1.19362 0.99101 1.15699 1.03213 0.89192 1.25771 1.00324 0.98173 1.01511 1.70147 1.28966 1.24467 1.36446 0.85020 0.78088 0.77274 0.78137 1.20118 1.21867 1.19886 1.19284 0.85976 0.93815 0.91343 1.21383 0.74160 0.80300 0.98908 1.22884 1.06130 1.01843 0.93803 1.92997 1.32378 1.96528 1.97663 1.92977 1.85094 1.43915 1.97570 0.92639 0.89250 0.87585 0.74740 0.90253 0.90962 0.82804 0.85082 0.84270 0.93807 0.94294 0.93998 0.95938 0.95595 0.86943 0.89893 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.68 71.98 0.62 -0.50 16 2 C -0.15 -1.83 2.41 -11.54 -0.03 -1.86 16 3 H 0.16 0.85 8.14 -2.38 -0.02 0.83 16 4 C 0.51 10.37 6.93 87.65 0.61 10.98 16 5 O -0.57 -17.45 14.82 -3.04 -0.05 -17.50 16 6 N -0.71 -11.73 5.44 -466.78 -2.54 -14.27 16 7 C 0.17 3.43 5.80 85.63 0.50 3.92 16 8 C -0.11 -2.42 5.25 -19.88 -0.10 -2.53 16 9 C -0.09 -2.02 9.70 22.25 0.22 -1.80 16 10 C -0.11 -3.35 10.05 22.30 0.22 -3.13 16 11 C -0.11 -4.36 6.22 -19.83 -0.12 -4.49 16 12 C -0.12 -4.18 6.22 -19.83 -0.12 -4.31 16 13 C -0.07 -2.01 9.70 22.30 0.22 -1.80 16 14 C 0.17 7.25 7.25 85.63 0.62 7.87 16 15 N -0.63 -33.14 3.41 -709.69 -2.42 -35.56 16 16 C -0.25 -13.83 10.32 84.04 0.87 -12.96 16 17 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 18 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 19 N -0.95 -56.99 10.44 21.65 0.23 -56.76 16 20 Si 0.99 45.09 29.55 68.60 2.03 47.12 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.22 11.27 5.39 85.63 0.46 11.74 16 25 C 0.29 4.75 1.50 30.60 0.05 4.79 16 26 C -0.19 -1.28 9.14 71.98 0.66 -0.62 16 27 F -0.21 -5.06 15.82 44.97 0.71 -4.35 16 28 F -0.21 -4.94 15.75 44.97 0.71 -4.23 16 29 H 0.05 0.66 7.68 -2.39 -0.02 0.64 16 30 H 0.09 0.49 7.56 -2.39 -0.02 0.47 16 31 H 0.11 0.22 6.56 -2.39 -0.02 0.21 16 32 H 0.42 4.97 7.88 -92.71 -0.73 4.24 16 33 H 0.08 1.57 8.09 -2.38 -0.02 1.55 16 34 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 41 H 0.02 1.30 7.49 -2.39 -0.02 1.28 16 42 H 0.03 1.47 7.49 -2.39 -0.02 1.46 16 43 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 0.28 6.56 -2.39 -0.02 0.26 16 Total: -1.00 -78.38 375.04 4.08 -74.29 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.29 Total: 9.15 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.13 Total: 2.12 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.73 Total: -106.59 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.05 Total: -17.50 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 1.42 Total: -8.58 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -78.38 4.08 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570313652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.771 kcal (2) G-P(sol) polarization free energy of solvation -78.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds