Wall clock time and date at job start Tue Mar 31 2020 20:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46772 * 2 1 4 4 C 1.52997 * 109.47401 * 120.00028 * 2 1 3 5 5 C 1.50703 * 109.47227 * 295.00301 * 4 2 1 6 6 C 1.38236 * 120.00445 * 264.71941 * 5 4 2 7 7 C 1.38221 * 120.01003 * 179.76870 * 6 5 4 8 8 C 1.38257 * 120.02411 * 0.51171 * 7 6 5 9 9 C 1.38190 * 120.01882 * 359.74292 * 8 7 6 10 10 C 1.38325 * 120.00681 * 85.00304 * 5 4 2 11 11 Cl 1.73605 * 120.01531 * 359.94864 * 10 5 4 12 12 C 1.50698 * 109.47272 * 240.00675 * 2 1 3 13 13 O 1.21278 * 119.99790 * 240.00223 * 12 2 1 14 14 N 1.34782 * 120.00067 * 59.98891 * 12 2 1 15 15 C 1.46497 * 119.99809 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47178 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.47273 * 295.00454 * 16 15 14 18 18 C 1.53003 * 109.47441 * 175.00149 * 16 15 14 19 19 N 1.46503 * 109.46941 * 55.00028 * 16 15 14 20 20 C 1.46498 * 119.99940 * 60.00388 * 19 16 15 21 21 C 1.36938 * 120.00064 * 239.99828 * 19 16 15 22 22 H 1.07991 * 120.00075 * 23.10586 * 21 19 16 23 23 C 1.38817 * 119.99764 * 203.09737 * 21 19 16 24 24 N 1.31610 * 120.00284 * 13.00255 * 23 21 19 25 25 Si 1.86804 * 119.99616 * 192.99367 * 23 21 19 26 26 H 1.48507 * 109.47076 * 60.00731 * 25 23 21 27 27 H 1.48501 * 109.46900 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47194 * 300.00363 * 25 23 21 29 29 H 1.08997 * 109.47719 * 59.99502 * 1 2 3 30 30 H 1.09002 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47238 * 299.99147 * 1 2 3 32 32 H 1.09001 * 109.46633 * 55.00454 * 4 2 1 33 33 H 1.08995 * 109.47137 * 175.00128 * 4 2 1 34 34 H 1.08001 * 119.99255 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.98381 * 180.23233 * 7 6 5 36 36 H 1.08009 * 119.99328 * 179.76402 * 8 7 6 37 37 H 1.07997 * 120.00724 * 180.02562 * 9 8 7 38 38 H 0.96998 * 119.99799 * 0.02562 * 14 12 2 39 39 H 1.08999 * 109.47251 * 60.00842 * 15 14 12 40 40 H 1.09002 * 109.47537 * 300.01005 * 15 14 12 41 41 H 1.08998 * 109.46940 * 300.00193 * 18 16 15 42 42 H 1.09000 * 109.46807 * 60.00195 * 18 16 15 43 43 H 1.08997 * 109.46895 * 179.97438 * 18 16 15 44 44 H 1.09003 * 109.47258 * 95.12647 * 20 19 16 45 45 H 1.09002 * 109.47280 * 215.12696 * 20 19 16 46 46 H 1.09005 * 109.47259 * 335.12499 * 20 19 16 47 47 H 0.96996 * 119.99954 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.5262 0.9552 3.0433 7 6 2.1589 1.6725 4.1662 8 6 0.9103 1.4845 4.7295 9 6 0.0268 0.5830 4.1670 10 6 0.3921 -0.1316 3.0397 11 17 -0.7175 -1.2638 2.3321 12 6 2.0323 -0.7102 -1.2305 13 8 2.7295 -1.6963 -1.1193 14 7 1.7066 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6508 16 6 1.6850 -0.2190 -4.9000 17 1 0.5985 -0.2952 -4.9459 18 6 2.2946 -0.8643 -6.1462 19 7 2.0734 1.1924 -4.8412 20 6 3.4899 1.5600 -4.7732 21 6 1.1125 2.1680 -4.8500 22 1 0.1070 1.9383 -4.5299 23 6 1.4310 3.4521 -5.2701 24 7 2.5668 3.6771 -5.8957 25 14 0.2472 4.8608 -4.9476 26 1 0.0352 5.0042 -3.4848 27 1 0.8170 6.1202 -5.4905 28 1 -1.0510 4.5780 -5.6106 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.6054 -1.7198 1.2950 33 1 3.1263 -0.7994 1.2055 34 1 3.5032 1.0994 2.6061 35 1 2.8492 2.3769 4.6065 36 1 0.6253 2.0425 5.6092 37 1 -0.9486 0.4366 4.6069 38 1 1.1491 0.5390 -2.5435 39 1 1.8308 -1.9681 -3.6507 40 1 3.2845 -0.9410 -3.6510 41 1 3.3809 -0.7880 -6.1002 42 1 2.0055 -1.9143 -6.1899 43 1 1.9312 -0.3504 -7.0361 44 1 3.8590 1.7714 -5.7768 45 1 3.6057 2.4463 -4.1493 46 1 4.0589 0.7359 -4.3428 47 1 2.7891 4.5744 -6.1896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570740779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:07 Heat of formation + Delta-G solvation = -21.012811 kcal Electronic energy + Delta-G solvation = -27444.719867 eV Core-core repulsion = 23653.033973 eV Total energy + Delta-G solvation = -3791.685894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17449 -40.20798 -38.44099 -37.40583 -35.95377 -35.39963 -33.72695 -32.03386 -31.54770 -31.04523 -28.00692 -27.74943 -27.30242 -25.05132 -24.35941 -23.51774 -22.10728 -21.11795 -20.47625 -18.86443 -18.27919 -17.67514 -17.17646 -17.04314 -16.75152 -16.24389 -16.15254 -15.76765 -15.45111 -15.00824 -14.75303 -14.66056 -14.53104 -14.37956 -13.86279 -13.76374 -13.57204 -13.35079 -13.23137 -13.04690 -12.87244 -12.64628 -12.62629 -12.53949 -12.39886 -12.38102 -12.30063 -12.11653 -11.93034 -11.89606 -11.78021 -11.50544 -11.24708 -10.71436 -10.59020 -9.91029 -9.83154 -9.56707 -8.76076 -7.77623 -5.26302 0.20714 0.32409 1.21045 1.51075 1.52085 1.57967 1.70946 2.34640 2.54114 2.71395 3.37238 3.59142 3.67145 3.77830 3.86137 4.02242 4.03559 4.08754 4.20309 4.35511 4.40012 4.42319 4.48505 4.60668 4.69979 4.72719 4.75044 4.77454 4.83874 4.90211 4.94890 5.01777 5.04250 5.16477 5.23348 5.25630 5.32083 5.36714 5.42630 5.48066 5.52934 5.62468 5.70261 5.74939 5.90304 6.36497 6.69010 7.18730 7.32281 7.90158 8.36298 9.25502 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.003185 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.348704 B = 8789.037529 C = 9854.858595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.102 0.898 4 C -0.057 4.057 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.046 4.046 11 Cl -0.072 7.072 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.705 5.705 15 C 0.116 3.884 16 C 0.157 3.843 17 H 0.073 0.927 18 C -0.149 4.149 19 N -0.602 5.602 20 C 0.186 3.814 21 C -0.259 4.259 22 H 0.079 0.921 23 C -0.048 4.048 24 N -0.938 5.938 25 Si 0.962 3.038 26 H -0.276 1.276 27 H -0.303 1.303 28 H -0.277 1.277 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.410 0.590 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.002 0.998 45 H 0.012 0.988 46 H 0.018 0.982 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 -6.272 20.683 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.120 0.880 4 C -0.095 4.095 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.129 4.129 9 C -0.134 4.134 10 C -0.073 4.073 11 Cl -0.043 7.043 12 C 0.301 3.699 13 O -0.469 6.469 14 N -0.355 5.355 15 C -0.010 4.010 16 C 0.050 3.950 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.325 5.325 20 C 0.041 3.959 21 C -0.389 4.389 22 H 0.097 0.903 23 C -0.244 4.244 24 N -0.585 5.585 25 Si 0.791 3.209 26 H -0.201 1.201 27 H -0.229 1.229 28 H -0.203 1.203 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.165 0.835 38 H 0.246 0.754 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.264 -6.919 20.600 22.145 hybrid contribution -0.478 1.200 -0.644 1.444 sum -4.742 -5.719 19.956 21.294 Atomic orbital electron populations 1.22167 0.91829 1.02734 1.03151 1.21198 0.98559 1.00576 0.91266 0.88045 1.20320 1.01658 0.98084 0.89420 1.19747 0.93020 0.98402 0.97074 1.21305 0.99821 0.95541 0.96638 1.21589 0.97268 0.99003 0.95250 1.21482 0.93281 0.97498 1.00653 1.21327 1.01531 0.96256 0.94305 1.20989 0.91768 0.96958 0.97555 1.98365 1.62095 1.60591 1.83296 1.20978 0.79441 0.84114 0.85409 1.90625 1.40335 1.28433 1.87531 1.45939 1.52615 1.31822 1.05122 1.21753 0.98401 0.95637 0.85166 1.20774 0.98399 0.83743 0.92096 0.90878 1.22075 1.00478 1.00379 0.97892 1.44100 1.02322 1.00552 1.85524 1.20360 0.83847 0.94593 0.97146 1.19530 0.92897 0.89948 1.36484 0.90319 1.25718 0.98794 1.00941 0.98911 1.70227 1.25580 1.20261 1.42385 0.85425 0.78642 0.78808 0.78041 1.20148 1.22926 1.20291 0.92197 0.91998 0.90435 0.90728 0.90607 0.84390 0.83033 0.82431 0.83507 0.75406 0.91118 0.93576 0.93786 0.90595 0.94010 0.98000 0.96910 0.96339 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 7.32 71.98 0.53 -2.85 16 2 C -0.09 -2.50 2.71 -11.54 -0.03 -2.53 16 3 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 4 C -0.06 -1.41 3.97 29.85 0.12 -1.29 16 5 C -0.08 -1.72 4.86 -19.84 -0.10 -1.82 16 6 C -0.11 -2.07 9.68 22.27 0.22 -1.85 16 7 C -0.11 -1.58 10.05 22.27 0.22 -1.36 16 8 C -0.11 -1.43 10.04 22.26 0.22 -1.21 16 9 C -0.12 -1.81 9.83 22.29 0.22 -1.60 16 10 C -0.05 -0.92 5.18 22.32 0.12 -0.80 16 11 Cl -0.07 -1.49 23.13 -2.72 -0.06 -1.56 16 12 C 0.51 16.98 7.15 87.66 0.63 17.61 16 13 O -0.59 -22.88 15.92 -3.02 -0.05 -22.93 16 14 N -0.71 -23.74 5.28 -463.07 -2.45 -26.19 16 15 C 0.12 4.01 4.93 86.38 0.43 4.43 16 16 C 0.16 5.85 2.87 44.99 0.13 5.97 16 17 H 0.07 2.66 7.87 -2.38 -0.02 2.64 16 18 C -0.15 -5.09 9.19 71.98 0.66 -4.43 16 19 N -0.60 -27.66 2.28 -702.76 -1.61 -29.26 16 20 C 0.19 8.97 8.00 127.77 1.02 9.99 16 21 C -0.26 -12.96 9.32 84.03 0.78 -12.18 16 22 H 0.08 3.71 7.82 -2.92 -0.02 3.69 16 23 C -0.05 -2.56 5.10 84.86 0.43 -2.13 16 24 N -0.94 -53.87 10.72 21.65 0.23 -53.64 16 25 Si 0.96 42.94 29.57 68.60 2.03 44.96 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 29 H 0.06 1.43 7.56 -2.39 -0.02 1.41 16 30 H 0.06 1.50 6.73 -2.39 -0.02 1.48 16 31 H 0.08 1.72 5.29 -2.39 -0.01 1.71 16 32 H 0.07 1.99 7.13 -2.39 -0.02 1.97 16 33 H 0.08 1.97 7.86 -2.39 -0.02 1.95 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.41 13.96 7.31 -92.71 -0.68 13.28 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 41 H 0.04 1.54 7.67 -2.39 -0.02 1.53 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.00 0.09 7.34 -2.39 -0.02 0.07 16 45 H 0.01 0.65 7.35 -2.39 -0.02 0.63 16 46 H 0.02 0.80 6.53 -2.38 -0.02 0.78 16 47 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -63.50 384.86 3.99 -59.51 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.29 Total: 25.13 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.60 Total: 3.97 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.82 Total: -109.09 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.06 Total: -1.56 kcal Total: -63.50 3.99 -59.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570740779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.501 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds