Wall clock time and date at job start Tue Mar 31 2020 20:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46922 * 2 1 4 4 C 1.52998 * 109.47067 * 240.00141 * 2 1 3 5 5 C 1.50697 * 109.47110 * 64.99881 * 4 2 1 6 6 C 1.38238 * 120.00350 * 264.71915 * 5 4 2 7 7 C 1.38220 * 120.01236 * 179.76999 * 6 5 4 8 8 C 1.38268 * 120.02528 * 0.51076 * 7 6 5 9 9 C 1.38189 * 120.01058 * 359.74503 * 8 7 6 10 10 C 1.38326 * 120.01194 * 84.99980 * 5 4 2 11 11 Cl 1.73605 * 120.00975 * 359.95534 * 10 5 4 12 12 C 1.50702 * 109.47102 * 119.99824 * 2 1 3 13 13 O 1.21283 * 119.99816 * 114.39403 * 12 2 1 14 14 N 1.34773 * 119.99931 * 294.38475 * 12 2 1 15 15 C 1.46504 * 120.00230 * 355.12124 * 14 12 2 16 16 C 1.46501 * 119.99768 * 175.11213 * 14 12 2 17 17 C 1.52999 * 109.47012 * 90.00403 * 16 14 12 18 18 H 1.09005 * 109.47404 * 295.00139 * 17 16 14 19 19 C 1.52993 * 109.47358 * 174.99795 * 17 16 14 20 20 N 1.46508 * 109.47055 * 55.00171 * 17 16 14 21 21 C 1.36936 * 119.99767 * 205.00176 * 20 17 16 22 22 H 1.07996 * 120.00187 * 359.97438 * 21 20 17 23 23 C 1.38811 * 119.99888 * 179.97438 * 21 20 17 24 24 N 1.31620 * 120.00055 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99941 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47196 * 89.99772 * 25 23 21 27 27 H 1.48500 * 109.47329 * 210.00191 * 25 23 21 28 28 H 1.48500 * 109.47122 * 329.99807 * 25 23 21 29 29 H 1.09001 * 109.47218 * 50.81567 * 1 2 3 30 30 H 1.08999 * 109.46851 * 170.81948 * 1 2 3 31 31 H 1.08998 * 109.47062 * 290.81160 * 1 2 3 32 32 H 1.08997 * 109.46997 * 184.99495 * 4 2 1 33 33 H 1.08999 * 109.47080 * 304.99467 * 4 2 1 34 34 H 1.08000 * 119.99543 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.99151 * 180.28167 * 7 6 5 36 36 H 1.08002 * 119.99133 * 179.76850 * 8 7 6 37 37 H 1.08003 * 120.00222 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.46482 * 264.09126 * 15 14 12 39 39 H 1.09000 * 109.46884 * 24.09346 * 15 14 12 40 40 H 1.08999 * 109.47135 * 144.10038 * 15 14 12 41 41 H 1.09001 * 109.47025 * 210.00317 * 16 14 12 42 42 H 1.09001 * 109.47376 * 330.00641 * 16 14 12 43 43 H 1.09002 * 109.47623 * 179.97438 * 19 17 16 44 44 H 1.08997 * 109.47642 * 300.00131 * 19 17 16 45 45 H 1.09001 * 109.46859 * 60.00253 * 19 17 16 46 46 H 0.96997 * 119.99690 * 24.99703 * 20 17 16 47 47 H 0.97007 * 119.99585 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 6 0.4891 -0.2775 -3.1632 7 6 0.1207 0.4393 -4.2861 8 6 0.9099 1.4845 -4.7295 9 6 2.0647 1.8165 -4.0469 10 6 2.4312 1.1027 -2.9196 11 17 3.8815 1.5194 -2.0613 12 6 2.0324 -0.7104 1.2305 13 8 2.6435 -1.7524 1.1221 14 7 1.8027 -0.1877 2.4513 15 6 1.1595 1.1225 2.5781 16 6 2.1959 -0.9298 3.6517 17 6 3.6264 -0.5504 4.0400 18 1 4.3137 -0.8783 3.2601 19 6 3.9932 -1.2289 5.3613 20 7 3.7211 0.9034 4.1948 21 6 4.9266 1.5321 4.0316 22 1 5.8075 0.9564 3.7892 23 6 5.0163 2.9096 4.1777 24 7 6.1750 3.5140 4.0214 25 14 3.4927 3.9055 4.5977 26 1 3.3588 4.0070 6.0731 27 1 3.6153 5.2667 4.0169 28 1 2.2926 3.2344 4.0368 29 1 -0.3634 0.6493 -0.7966 30 1 -0.3633 -1.0145 -0.1640 31 1 -0.3633 0.3651 0.9606 32 1 3.1263 -0.7993 -1.2056 33 1 1.6055 -1.7198 -1.2951 34 1 -0.1255 -1.0964 -2.8198 35 1 -0.7819 0.1805 -4.8197 36 1 0.6235 2.0418 -5.6091 37 1 2.6812 2.6326 -4.3935 38 1 1.9227 1.8921 2.6938 39 1 0.5707 1.3262 1.6837 40 1 0.5068 1.1240 3.4510 41 1 1.5196 -0.6822 4.4698 42 1 2.1459 -1.9998 3.4500 43 1 5.0125 -0.9590 5.6377 44 1 3.3060 -0.9010 6.1412 45 1 3.9227 -2.3105 5.2461 46 1 2.9299 1.4204 4.4128 47 1 6.2377 4.4766 4.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571408812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:51 Heat of formation + Delta-G solvation = -3.719368 kcal Electronic energy + Delta-G solvation = -27943.857334 eV Core-core repulsion = 24152.921340 eV Total energy + Delta-G solvation = -3790.935994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25950 -39.35992 -36.56762 -36.42544 -35.08919 -34.26380 -32.10052 -31.05424 -30.88637 -29.44041 -27.20833 -26.63386 -25.94358 -23.60923 -22.94971 -22.75105 -21.16559 -20.07596 -18.75305 -17.64085 -17.31064 -16.74300 -16.05877 -15.90682 -15.41685 -15.10099 -14.80209 -14.44738 -14.10347 -13.99807 -13.69541 -13.51018 -13.18959 -12.99667 -12.75534 -12.63758 -12.32456 -12.25917 -12.18507 -11.96342 -11.68194 -11.64127 -11.52315 -11.50193 -11.35452 -11.09797 -10.94759 -10.87616 -10.68321 -10.63796 -10.55176 -9.98510 -9.55481 -9.38464 -9.08843 -8.92991 -8.78414 -8.21951 -7.21185 -5.73725 -3.08172 0.95512 1.04210 2.14608 2.94901 3.26213 3.29930 3.36045 3.42935 3.46304 4.42526 4.56433 4.58436 4.70179 4.75134 4.90330 4.94463 5.10216 5.16061 5.21052 5.30105 5.40198 5.42960 5.52548 5.55314 5.58638 5.61928 5.64390 5.73993 5.77837 5.83003 6.00628 6.02129 6.04766 6.15119 6.17144 6.21036 6.22246 6.25965 6.32722 6.48513 6.58695 6.76658 6.84802 7.10740 7.70932 8.03945 8.44793 8.50265 9.23713 9.95555 10.16325 11.45147 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003852 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.660601 B = 7267.682019 C = 8335.533628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.065 4.065 5 C -0.067 4.067 6 C -0.104 4.104 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.110 4.110 10 C -0.037 4.037 11 Cl -0.052 7.052 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.596 5.596 15 C 0.057 3.943 16 C 0.109 3.891 17 C 0.160 3.840 18 H 0.060 0.940 19 C -0.162 4.162 20 N -0.744 5.744 21 C -0.234 4.234 22 H 0.088 0.912 23 C 0.002 3.998 24 N -0.936 5.936 25 Si 0.878 3.122 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.041 0.959 46 H 0.358 0.642 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 -6.317 -14.824 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 H 0.117 0.883 4 C -0.103 4.103 5 C -0.067 4.067 6 C -0.123 4.123 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.128 4.128 10 C -0.064 4.064 11 Cl -0.023 7.023 12 C 0.311 3.689 13 O -0.422 6.422 14 N -0.328 5.328 15 C -0.086 4.086 16 C -0.014 4.014 17 C 0.050 3.950 18 H 0.078 0.922 19 C -0.223 4.223 20 N -0.387 5.387 21 C -0.364 4.364 22 H 0.106 0.894 23 C -0.193 4.193 24 N -0.584 5.584 25 Si 0.710 3.290 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.191 0.809 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.129 -6.770 -14.835 22.936 hybrid contribution -0.784 1.199 0.509 1.520 sum -16.913 -5.571 -14.326 22.855 Atomic orbital electron populations 1.22033 0.93153 1.02720 1.02963 1.21208 0.97286 1.01433 0.92629 0.88319 1.20471 1.03182 0.97765 0.88868 1.19818 0.94452 0.95178 0.97294 1.21052 0.95781 1.00117 0.95307 1.21219 0.99836 0.95846 0.96671 1.21090 0.94493 0.97809 0.99991 1.21086 0.97615 0.99850 0.94279 1.21013 0.91259 0.98182 0.95906 1.98442 1.35256 1.92486 1.76099 1.20351 0.79135 0.85134 0.84270 1.90658 1.40797 1.24443 1.86330 1.47530 1.59796 1.19685 1.05776 1.22365 0.98424 0.85428 1.02379 1.21885 0.97085 0.96602 0.85830 1.20616 0.93951 0.85060 0.95377 0.92174 1.22341 1.02323 0.98427 0.99196 1.42741 1.08230 1.01760 1.86000 1.19076 0.86999 0.90719 1.39571 0.89407 1.24645 0.96166 0.96232 1.02244 1.69702 1.22866 1.08994 1.56840 0.86711 0.83861 0.80202 0.78267 1.21339 1.21909 1.19899 0.91514 0.92007 0.91114 0.89230 0.89897 0.85201 0.85607 0.85379 0.85013 0.90568 0.90329 0.91812 0.91207 0.89978 0.92140 0.93656 0.94027 0.80917 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.06 37.16 0.30 -1.22 16 2 C -0.10 -1.39 1.88 -91.77 -0.17 -1.56 16 3 H 0.10 1.42 7.53 -51.93 -0.39 1.02 16 4 C -0.07 -0.84 3.64 -27.89 -0.10 -0.94 16 5 C -0.07 -0.75 4.58 -104.59 -0.48 -1.23 16 6 C -0.10 -0.94 8.64 -39.59 -0.34 -1.28 16 7 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 8 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 9 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 10 C -0.04 -0.44 6.31 -39.50 -0.25 -0.69 16 11 Cl -0.05 -0.75 27.20 -51.86 -1.41 -2.16 16 12 C 0.52 8.72 6.98 -10.99 -0.08 8.64 16 13 O -0.54 -10.65 15.61 5.56 0.09 -10.56 16 14 N -0.60 -9.65 2.73 -181.57 -0.50 -10.14 16 15 C 0.06 0.82 8.70 59.85 0.52 1.34 16 16 C 0.11 1.78 5.04 -4.04 -0.02 1.76 16 17 C 0.16 3.18 3.20 -67.93 -0.22 2.97 16 18 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 19 C -0.16 -2.89 9.49 37.15 0.35 -2.54 16 20 N -0.74 -17.21 4.14 -53.42 -0.22 -17.43 16 21 C -0.23 -6.57 10.41 -15.06 -0.16 -6.73 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 24 N -0.94 -29.53 13.97 55.49 0.78 -28.76 16 25 Si 0.88 21.42 27.71 -169.99 -4.71 16.71 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.27 -5.84 4.86 56.52 0.27 -5.57 16 29 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 30 H 0.06 0.58 8.11 -51.93 -0.42 0.15 16 31 H 0.07 0.68 5.40 -51.93 -0.28 0.40 16 32 H 0.09 1.36 7.02 -51.93 -0.36 0.99 16 33 H 0.08 1.00 8.03 -51.93 -0.42 0.59 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.08 1.36 5.33 -51.93 -0.28 1.09 16 39 H 0.08 0.93 4.10 -51.93 -0.21 0.71 16 40 H 0.06 0.80 7.98 -51.93 -0.41 0.38 16 41 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 42 H 0.08 1.30 7.49 -51.93 -0.39 0.91 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.36 7.91 4.09 -40.82 -0.17 7.74 16 47 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -33.42 384.07 -9.29 -42.71 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.18 Total: 9.49 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.92 Total: -5.65 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.06 Total: -56.33 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.42 -9.29 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571408812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.993 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds