Wall clock time and date at job start Tue Mar 31 2020 20:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46922 * 2 1 4 4 C 1.52998 * 109.47067 * 240.00141 * 2 1 3 5 5 C 1.50697 * 109.47110 * 64.99881 * 4 2 1 6 6 C 1.38238 * 120.00350 * 264.71915 * 5 4 2 7 7 C 1.38220 * 120.01236 * 179.76999 * 6 5 4 8 8 C 1.38268 * 120.02528 * 0.51076 * 7 6 5 9 9 C 1.38189 * 120.01058 * 359.74503 * 8 7 6 10 10 C 1.38326 * 120.01194 * 84.99980 * 5 4 2 11 11 Cl 1.73605 * 120.00975 * 359.95534 * 10 5 4 12 12 C 1.50702 * 109.47102 * 119.99824 * 2 1 3 13 13 O 1.21283 * 119.99816 * 114.39403 * 12 2 1 14 14 N 1.34773 * 119.99931 * 294.38475 * 12 2 1 15 15 C 1.46504 * 120.00230 * 355.12124 * 14 12 2 16 16 C 1.46501 * 119.99768 * 175.11213 * 14 12 2 17 17 C 1.52999 * 109.47012 * 90.00403 * 16 14 12 18 18 H 1.09005 * 109.47404 * 295.00139 * 17 16 14 19 19 C 1.52993 * 109.47358 * 174.99795 * 17 16 14 20 20 N 1.46508 * 109.47055 * 55.00171 * 17 16 14 21 21 C 1.36936 * 119.99767 * 205.00176 * 20 17 16 22 22 H 1.07996 * 120.00187 * 359.97438 * 21 20 17 23 23 C 1.38811 * 119.99888 * 179.97438 * 21 20 17 24 24 N 1.31620 * 120.00055 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99941 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47196 * 89.99772 * 25 23 21 27 27 H 1.48500 * 109.47329 * 210.00191 * 25 23 21 28 28 H 1.48500 * 109.47122 * 329.99807 * 25 23 21 29 29 H 1.09001 * 109.47218 * 50.81567 * 1 2 3 30 30 H 1.08999 * 109.46851 * 170.81948 * 1 2 3 31 31 H 1.08998 * 109.47062 * 290.81160 * 1 2 3 32 32 H 1.08997 * 109.46997 * 184.99495 * 4 2 1 33 33 H 1.08999 * 109.47080 * 304.99467 * 4 2 1 34 34 H 1.08000 * 119.99543 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.99151 * 180.28167 * 7 6 5 36 36 H 1.08002 * 119.99133 * 179.76850 * 8 7 6 37 37 H 1.08003 * 120.00222 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.46482 * 264.09126 * 15 14 12 39 39 H 1.09000 * 109.46884 * 24.09346 * 15 14 12 40 40 H 1.08999 * 109.47135 * 144.10038 * 15 14 12 41 41 H 1.09001 * 109.47025 * 210.00317 * 16 14 12 42 42 H 1.09001 * 109.47376 * 330.00641 * 16 14 12 43 43 H 1.09002 * 109.47623 * 179.97438 * 19 17 16 44 44 H 1.08997 * 109.47642 * 300.00131 * 19 17 16 45 45 H 1.09001 * 109.46859 * 60.00253 * 19 17 16 46 46 H 0.96997 * 119.99690 * 24.99703 * 20 17 16 47 47 H 0.97007 * 119.99585 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 6 0.4891 -0.2775 -3.1632 7 6 0.1207 0.4393 -4.2861 8 6 0.9099 1.4845 -4.7295 9 6 2.0647 1.8165 -4.0469 10 6 2.4312 1.1027 -2.9196 11 17 3.8815 1.5194 -2.0613 12 6 2.0324 -0.7104 1.2305 13 8 2.6435 -1.7524 1.1221 14 7 1.8027 -0.1877 2.4513 15 6 1.1595 1.1225 2.5781 16 6 2.1959 -0.9298 3.6517 17 6 3.6264 -0.5504 4.0400 18 1 4.3137 -0.8783 3.2601 19 6 3.9932 -1.2289 5.3613 20 7 3.7211 0.9034 4.1948 21 6 4.9266 1.5321 4.0316 22 1 5.8075 0.9564 3.7892 23 6 5.0163 2.9096 4.1777 24 7 6.1750 3.5140 4.0214 25 14 3.4927 3.9055 4.5977 26 1 3.3588 4.0070 6.0731 27 1 3.6153 5.2667 4.0169 28 1 2.2926 3.2344 4.0368 29 1 -0.3634 0.6493 -0.7966 30 1 -0.3633 -1.0145 -0.1640 31 1 -0.3633 0.3651 0.9606 32 1 3.1263 -0.7993 -1.2056 33 1 1.6055 -1.7198 -1.2951 34 1 -0.1255 -1.0964 -2.8198 35 1 -0.7819 0.1805 -4.8197 36 1 0.6235 2.0418 -5.6091 37 1 2.6812 2.6326 -4.3935 38 1 1.9227 1.8921 2.6938 39 1 0.5707 1.3262 1.6837 40 1 0.5068 1.1240 3.4510 41 1 1.5196 -0.6822 4.4698 42 1 2.1459 -1.9998 3.4500 43 1 5.0125 -0.9590 5.6377 44 1 3.3060 -0.9010 6.1412 45 1 3.9227 -2.3105 5.2461 46 1 2.9299 1.4204 4.4128 47 1 6.2377 4.4766 4.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571408812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:50 Heat of formation + Delta-G solvation = -23.621425 kcal Electronic energy + Delta-G solvation = -27944.720352 eV Core-core repulsion = 24152.921340 eV Total energy + Delta-G solvation = -3791.799012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39804 -40.27384 -38.12320 -37.39226 -36.21309 -35.74247 -34.03175 -32.04683 -31.63026 -31.23637 -28.34874 -27.61203 -27.21258 -25.48828 -24.05240 -23.54864 -22.21019 -21.61263 -20.09696 -19.61804 -18.30803 -17.69784 -17.32783 -16.82397 -16.70224 -16.45498 -16.09497 -15.74380 -15.44036 -15.19336 -14.80058 -14.63173 -14.41690 -14.27967 -14.11977 -13.83411 -13.71057 -13.58407 -13.27871 -13.21911 -13.04035 -12.82458 -12.69396 -12.56085 -12.51125 -12.38122 -12.29816 -12.23145 -11.97575 -11.88993 -11.78860 -11.64878 -11.61819 -11.02645 -10.65170 -9.82192 -9.65259 -9.59871 -9.21601 -8.00774 -5.34027 0.20754 0.32884 1.24457 1.32521 1.41837 1.48820 1.65981 2.11852 2.49780 2.70420 3.30757 3.42157 3.59138 3.77096 3.82093 3.94374 4.04139 4.10641 4.16846 4.23755 4.30135 4.37648 4.43549 4.46561 4.58007 4.61797 4.68712 4.70203 4.78548 4.80104 4.83176 4.89338 4.96903 5.00924 5.04886 5.13845 5.23087 5.28741 5.34612 5.38959 5.49028 5.52203 5.67577 5.76923 5.92163 6.20947 6.44787 7.09337 7.21264 7.82557 8.07494 9.21608 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003852 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.660601 B = 7267.682019 C = 8335.533628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.059 4.059 5 C -0.079 4.079 6 C -0.102 4.102 7 C -0.108 4.108 8 C -0.110 4.110 9 C -0.120 4.120 10 C -0.057 4.057 11 Cl -0.091 7.091 12 C 0.514 3.486 13 O -0.583 6.583 14 N -0.600 5.600 15 C 0.052 3.948 16 C 0.115 3.885 17 C 0.156 3.844 18 H 0.016 0.984 19 C -0.153 4.153 20 N -0.738 5.738 21 C -0.224 4.224 22 H 0.038 0.962 23 C -0.068 4.068 24 N -0.991 5.991 25 Si 0.951 3.049 26 H -0.281 1.281 27 H -0.301 1.301 28 H -0.224 1.224 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.137 0.863 38 H 0.041 0.959 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.369 0.631 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.291 -6.453 -15.581 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.096 4.096 5 C -0.080 4.080 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.139 4.139 10 C -0.084 4.084 11 Cl -0.062 7.062 12 C 0.303 3.697 13 O -0.463 6.463 14 N -0.331 5.331 15 C -0.090 4.090 16 C -0.008 4.008 17 C 0.047 3.953 18 H 0.034 0.966 19 C -0.213 4.213 20 N -0.383 5.383 21 C -0.355 4.355 22 H 0.056 0.944 23 C -0.259 4.259 24 N -0.642 5.642 25 Si 0.778 3.222 26 H -0.207 1.207 27 H -0.229 1.229 28 H -0.147 1.147 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.155 0.845 38 H 0.060 0.940 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.203 0.797 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.645 -6.948 -15.589 27.565 hybrid contribution 0.994 1.132 0.632 1.633 sum -20.652 -5.816 -14.958 26.155 Atomic orbital electron populations 1.22007 0.89934 1.03954 1.04088 1.21199 0.99794 0.99885 0.91041 0.89700 1.20326 1.00983 0.98422 0.89904 1.19736 0.95706 0.95277 0.97262 1.21311 0.94795 1.00578 0.95286 1.21638 1.00494 0.94654 0.95815 1.21478 0.93237 0.97771 1.00259 1.21281 0.98702 1.00010 0.93889 1.21190 0.90505 0.99698 0.96964 1.98425 1.37806 1.92861 1.77145 1.21055 0.78387 0.84848 0.85411 1.90633 1.42357 1.26351 1.86969 1.47689 1.59505 1.20290 1.05575 1.22518 0.97862 0.83265 1.05342 1.21832 0.94778 0.97135 0.87079 1.20754 0.95994 0.83278 0.95300 0.96623 1.22194 1.00868 1.00056 0.98209 1.42568 1.06636 1.03130 1.85972 1.18895 0.87483 0.90764 1.38378 0.94433 1.25560 1.00134 0.97451 1.02706 1.69929 1.26159 1.09144 1.58931 0.85545 0.80920 0.77662 0.78122 1.20725 1.22855 1.14744 0.89921 0.90868 0.90180 0.92808 0.89382 0.83059 0.82172 0.82442 0.84539 0.94033 0.87623 0.88715 0.87666 0.89355 0.95238 0.91503 0.91226 0.79669 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.06 71.98 0.58 -1.83 16 2 C -0.10 -2.54 1.88 -11.54 -0.02 -2.56 16 3 H 0.08 2.45 7.53 -2.38 -0.02 2.43 16 4 C -0.06 -1.52 3.64 29.85 0.11 -1.41 16 5 C -0.08 -1.71 4.58 -19.84 -0.09 -1.80 16 6 C -0.10 -1.50 8.64 22.27 0.19 -1.31 16 7 C -0.11 -1.23 10.05 22.27 0.22 -1.01 16 8 C -0.11 -1.42 10.05 22.27 0.22 -1.19 16 9 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 10 C -0.06 -1.38 6.31 22.32 0.14 -1.23 16 11 Cl -0.09 -2.82 27.20 -2.72 -0.07 -2.89 16 12 C 0.51 17.04 6.98 87.66 0.61 17.65 16 13 O -0.58 -23.46 15.61 -3.04 -0.05 -23.50 16 14 N -0.60 -18.45 2.73 -846.74 -2.31 -20.76 16 15 C 0.05 1.34 8.70 127.77 1.11 2.45 16 16 C 0.12 3.52 5.04 86.38 0.44 3.96 16 17 C 0.16 6.24 3.20 44.99 0.14 6.39 16 18 H 0.02 0.76 8.08 -2.38 -0.02 0.74 16 19 C -0.15 -5.36 9.49 71.98 0.68 -4.67 16 20 N -0.74 -34.24 4.14 -322.93 -1.34 -35.57 16 21 C -0.22 -13.19 10.41 84.03 0.87 -12.32 16 22 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 24 N -0.99 -65.54 13.97 21.65 0.30 -65.24 16 25 Si 0.95 44.19 27.71 68.60 1.90 46.09 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.22 -8.52 4.86 99.48 0.48 -8.04 16 29 H 0.08 1.16 7.14 -2.39 -0.02 1.15 16 30 H 0.07 1.10 8.11 -2.39 -0.02 1.08 16 31 H 0.08 1.21 5.40 -2.39 -0.01 1.19 16 32 H 0.05 1.76 7.02 -2.39 -0.02 1.75 16 33 H 0.09 2.11 8.03 -2.39 -0.02 2.09 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.04 1.37 5.33 -2.39 -0.01 1.36 16 39 H 0.11 2.12 4.10 -2.39 -0.01 2.11 16 40 H 0.09 1.87 7.98 -2.39 -0.02 1.85 16 41 H 0.11 2.52 7.95 -2.39 -0.02 2.50 16 42 H 0.09 2.64 7.49 -2.39 -0.02 2.62 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.37 15.52 4.09 -92.71 -0.38 15.14 16 47 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 Total: -1.00 -80.28 384.07 4.71 -75.57 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.37 Total: 30.83 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.90 Total: -4.53 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -3.35 Total: -121.57 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.89 kcal Total: -80.28 4.71 -75.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571408812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.948 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds