Wall clock time and date at job start Tue Mar 31 2020 20:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 N 1.46495 * 109.47168 * 175.00143 * 4 2 1 6 6 C 1.46508 * 120.00019 * 270.00189 * 5 4 2 7 7 C 1.34774 * 120.00295 * 90.00085 * 5 4 2 8 8 O 1.21287 * 119.99879 * 0.02562 * 7 5 4 9 9 C 1.50695 * 120.00398 * 179.97438 * 7 5 4 10 10 H 1.09003 * 109.47173 * 300.00283 * 9 7 5 11 11 C 1.53005 * 109.46879 * 60.00175 * 9 7 5 12 12 C 1.52998 * 109.47132 * 179.97438 * 9 7 5 13 13 C 1.50699 * 109.46930 * 175.00098 * 12 9 7 14 14 C 1.38236 * 120.00970 * 264.72275 * 13 12 9 15 15 C 1.38226 * 120.01846 * 179.76806 * 14 13 12 16 16 C 1.38258 * 120.02085 * 0.51334 * 15 14 13 17 17 C 1.38196 * 120.01935 * 359.74235 * 16 15 14 18 18 C 1.38334 * 120.00752 * 85.00375 * 13 12 9 19 19 Cl 1.73593 * 120.01202 * 359.95145 * 18 13 12 20 20 N 1.46492 * 109.47244 * 240.00051 * 2 1 3 21 21 C 1.36932 * 120.00446 * 84.99924 * 20 2 1 22 22 H 1.08010 * 119.99590 * 0.02562 * 21 20 2 23 23 C 1.38812 * 120.00710 * 179.97438 * 21 20 2 24 24 N 1.31620 * 119.99622 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00442 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47101 * 90.00163 * 25 23 21 27 27 H 1.48496 * 109.47020 * 210.00233 * 25 23 21 28 28 H 1.48498 * 109.47164 * 330.00285 * 25 23 21 29 29 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 32 32 H 1.09000 * 109.47314 * 295.00428 * 4 2 1 33 33 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 34 34 H 1.09006 * 109.46798 * 90.00088 * 6 5 4 35 35 H 1.09000 * 109.47068 * 209.99948 * 6 5 4 36 36 H 1.09000 * 109.46931 * 330.00091 * 6 5 4 37 37 H 1.08998 * 109.47193 * 299.99883 * 11 9 7 38 38 H 1.09003 * 109.47130 * 60.00082 * 11 9 7 39 39 H 1.08998 * 109.46835 * 179.97438 * 11 9 7 40 40 H 1.08998 * 109.47711 * 294.99687 * 12 9 7 41 41 H 1.09004 * 109.47070 * 55.00583 * 12 9 7 42 42 H 1.08001 * 119.99310 * 0.02562 * 14 13 12 43 43 H 1.07994 * 119.98709 * 180.27470 * 15 14 13 44 44 H 1.08000 * 119.99222 * 179.76890 * 16 15 14 45 45 H 1.07989 * 120.01184 * 180.02562 * 17 16 15 46 46 H 0.97012 * 120.00025 * 264.99832 * 20 2 1 47 47 H 0.96998 * 120.00284 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5613 7 6 4.2675 0.1492 1.7157 8 8 3.7495 1.1140 2.2371 9 6 5.7694 0.0409 1.6559 10 1 6.0900 -0.8583 2.1820 11 6 6.2174 -0.0360 0.1949 12 6 6.3961 1.2701 2.3170 13 6 7.8932 1.1050 2.3672 14 6 8.4955 0.6019 3.5052 15 6 9.8682 0.4458 3.5498 16 6 10.6406 0.8027 2.4601 17 6 10.0403 1.3107 1.3237 18 6 8.6656 1.4622 1.2766 19 17 7.9107 2.0997 -0.1506 20 7 2.0183 -0.6906 -1.1961 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0406 -2.4241 23 6 2.6124 -0.6617 -3.5090 24 7 2.9254 -1.9388 -3.4498 25 14 2.7901 0.2700 -5.1182 26 1 4.1519 0.8560 -5.2031 27 1 2.5804 -0.6618 -6.2553 28 1 1.7793 1.3563 -5.1755 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1583 2.1371 33 1 1.6053 -1.7198 1.2952 34 1 4.2798 -1.7932 -0.4993 35 1 5.0863 -2.1898 1.0371 36 1 3.4769 -2.8599 0.6779 37 1 5.7709 -0.9115 -0.2765 38 1 5.8967 0.8632 -0.3312 39 1 7.3037 -0.1139 0.1516 40 1 6.1481 2.1600 1.7385 41 1 6.0080 1.3753 3.3301 42 1 7.8929 0.3268 4.3583 43 1 10.3377 0.0486 4.4375 44 1 11.7135 0.6841 2.4968 45 1 10.6437 1.5891 0.4725 46 1 2.2491 -1.6318 -1.1525 47 1 3.2488 -2.3961 -4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571408814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:58 Heat of formation + Delta-G solvation = -3.614667 kcal Electronic energy + Delta-G solvation = -28016.792987 eV Core-core repulsion = 24225.861533 eV Total energy + Delta-G solvation = -3790.931454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18843 -39.29433 -36.50380 -36.34886 -34.93149 -34.13014 -32.09247 -31.10046 -30.67061 -28.75908 -27.07546 -26.34174 -25.82809 -23.76831 -23.10886 -22.62577 -21.10387 -20.00889 -18.51422 -17.38157 -17.20963 -16.59702 -15.83801 -15.79763 -15.35828 -15.20630 -14.58401 -14.32847 -14.02242 -13.98041 -13.75190 -13.37416 -13.19272 -12.88393 -12.43476 -12.37540 -12.19213 -12.09983 -11.95722 -11.84377 -11.65264 -11.56153 -11.39217 -11.28116 -11.21886 -10.98478 -10.84219 -10.68691 -10.65223 -10.32393 -10.12052 -10.02878 -9.62479 -9.29222 -9.06083 -8.90266 -8.72203 -8.05702 -6.91060 -5.75593 -3.01696 0.97204 1.06295 2.12559 3.05482 3.37275 3.44178 3.50429 3.51203 3.56076 4.49653 4.59290 4.61790 4.73751 4.91413 5.00896 5.08349 5.17908 5.24057 5.35515 5.49851 5.56317 5.60539 5.63770 5.68743 5.71842 5.79443 5.89155 5.97492 6.02820 6.05478 6.08847 6.17366 6.19478 6.26060 6.31467 6.33528 6.37192 6.49551 6.60863 6.64766 6.71267 6.88100 6.92359 7.20494 7.73946 7.86283 8.43951 8.61905 9.55612 10.12058 10.48637 11.47278 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003772 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.760936 B = 7421.654952 C = 8854.573296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.051 0.949 4 C 0.111 3.889 5 N -0.593 5.593 6 C 0.075 3.925 7 C 0.521 3.479 8 O -0.553 6.553 9 C -0.097 4.097 10 H 0.090 0.910 11 C -0.161 4.161 12 C -0.066 4.066 13 C -0.065 4.065 14 C -0.107 4.107 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.033 4.033 19 Cl -0.054 7.054 20 N -0.719 5.719 21 C -0.228 4.228 22 H 0.067 0.933 23 C -0.012 4.012 24 N -0.935 5.935 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.382 0.618 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.542 1.341 14.791 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.069 0.931 4 C -0.013 4.013 5 N -0.323 5.323 6 C -0.068 4.068 7 C 0.309 3.691 8 O -0.432 6.432 9 C -0.118 4.118 10 H 0.108 0.892 11 C -0.218 4.218 12 C -0.104 4.104 13 C -0.066 4.066 14 C -0.125 4.125 15 C -0.134 4.134 16 C -0.135 4.135 17 C -0.129 4.129 18 C -0.060 4.060 19 Cl -0.025 7.025 20 N -0.361 5.361 21 C -0.359 4.359 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.584 5.584 25 Si 0.732 3.268 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.216 0.784 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.191 2.009 14.783 19.914 hybrid contribution 0.126 0.085 -1.274 1.283 sum 13.317 2.094 13.509 19.084 Atomic orbital electron populations 1.22372 0.98948 1.00750 1.00203 1.20640 0.91840 0.96278 0.86818 0.93141 1.21850 0.79054 1.01001 0.99355 1.47541 1.06546 1.21323 1.56927 1.22093 0.97249 0.87253 1.00178 1.20412 0.88988 0.82130 0.77592 1.90640 1.75212 1.31315 1.46046 1.21169 0.92104 0.99198 0.99309 0.89164 1.22453 1.01479 1.04576 0.93260 1.20484 0.88496 0.98710 1.02708 1.19847 0.96320 0.97926 0.92474 1.21066 0.94837 0.99181 0.97398 1.21219 0.93847 0.99657 0.98692 1.21082 1.00091 0.99304 0.92983 1.21080 0.92600 1.00045 0.99193 1.20935 0.93050 1.02408 0.89607 1.98412 1.81579 1.85011 1.37500 1.42379 1.78117 1.10418 1.05183 1.19219 1.35667 0.93744 0.87309 0.91529 1.24621 1.02528 0.95930 0.97705 1.69626 1.51586 1.08475 1.28748 0.86278 0.77774 0.78670 0.84054 1.21882 1.21883 1.20930 0.93533 0.94384 0.92631 0.90334 0.91159 0.89385 0.92065 0.91701 0.90522 0.91341 0.91885 0.89464 0.89929 0.85156 0.85579 0.85376 0.85058 0.78402 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.64 16 2 C 0.16 3.18 3.20 -67.93 -0.22 2.96 16 3 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 4 C 0.11 1.92 5.07 -4.04 -0.02 1.90 16 5 N -0.59 -10.06 2.73 -181.56 -0.50 -10.55 16 6 C 0.08 1.16 7.58 59.85 0.45 1.61 16 7 C 0.52 9.04 7.08 -10.99 -0.08 8.97 16 8 O -0.55 -11.12 15.50 5.55 0.09 -11.04 16 9 C -0.10 -1.36 1.91 -91.77 -0.18 -1.54 16 10 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 11 C -0.16 -2.45 7.06 37.16 0.26 -2.19 16 12 C -0.07 -0.88 3.97 -27.88 -0.11 -0.99 16 13 C -0.06 -0.75 4.86 -104.59 -0.51 -1.26 16 14 C -0.11 -1.02 9.68 -39.59 -0.38 -1.40 16 15 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 16 C -0.12 -0.97 10.04 -39.59 -0.40 -1.37 16 17 C -0.11 -1.10 9.83 -39.54 -0.39 -1.48 16 18 C -0.03 -0.39 5.18 -39.49 -0.20 -0.60 16 19 Cl -0.05 -0.73 23.12 -51.86 -1.20 -1.93 16 20 N -0.72 -17.28 4.39 -53.43 -0.23 -17.52 16 21 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.94 -26.87 13.06 55.49 0.72 -26.15 16 25 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.33 7.42 -51.93 -0.39 0.94 16 33 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 34 H 0.09 1.68 6.20 -51.93 -0.32 1.36 16 35 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 36 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 37 H 0.08 1.24 4.53 -51.93 -0.24 1.01 16 38 H 0.07 1.20 6.73 -51.93 -0.35 0.85 16 39 H 0.06 0.88 5.28 -51.93 -0.27 0.60 16 40 H 0.09 1.32 7.13 -51.93 -0.37 0.95 16 41 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.38 9.42 6.27 -40.81 -0.26 9.16 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -31.06 381.58 -9.49 -40.55 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.04 Total: 9.69 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.06 Total: -6.20 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.01 Total: -54.22 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.20 Total: -1.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.06 -9.49 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571408814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.935 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds