Wall clock time and date at job start Tue Mar 31 2020 20:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 N 1.46495 * 109.47168 * 175.00143 * 4 2 1 6 6 C 1.46508 * 120.00019 * 270.00189 * 5 4 2 7 7 C 1.34774 * 120.00295 * 90.00085 * 5 4 2 8 8 O 1.21287 * 119.99879 * 0.02562 * 7 5 4 9 9 C 1.50695 * 120.00398 * 179.97438 * 7 5 4 10 10 H 1.09003 * 109.47173 * 300.00283 * 9 7 5 11 11 C 1.53005 * 109.46879 * 60.00175 * 9 7 5 12 12 C 1.52998 * 109.47132 * 179.97438 * 9 7 5 13 13 C 1.50699 * 109.46930 * 175.00098 * 12 9 7 14 14 C 1.38236 * 120.00970 * 264.72275 * 13 12 9 15 15 C 1.38226 * 120.01846 * 179.76806 * 14 13 12 16 16 C 1.38258 * 120.02085 * 0.51334 * 15 14 13 17 17 C 1.38196 * 120.01935 * 359.74235 * 16 15 14 18 18 C 1.38334 * 120.00752 * 85.00375 * 13 12 9 19 19 Cl 1.73593 * 120.01202 * 359.95145 * 18 13 12 20 20 N 1.46492 * 109.47244 * 240.00051 * 2 1 3 21 21 C 1.36932 * 120.00446 * 84.99924 * 20 2 1 22 22 H 1.08010 * 119.99590 * 0.02562 * 21 20 2 23 23 C 1.38812 * 120.00710 * 179.97438 * 21 20 2 24 24 N 1.31620 * 119.99622 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00442 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47101 * 90.00163 * 25 23 21 27 27 H 1.48496 * 109.47020 * 210.00233 * 25 23 21 28 28 H 1.48498 * 109.47164 * 330.00285 * 25 23 21 29 29 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 32 32 H 1.09000 * 109.47314 * 295.00428 * 4 2 1 33 33 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 34 34 H 1.09006 * 109.46798 * 90.00088 * 6 5 4 35 35 H 1.09000 * 109.47068 * 209.99948 * 6 5 4 36 36 H 1.09000 * 109.46931 * 330.00091 * 6 5 4 37 37 H 1.08998 * 109.47193 * 299.99883 * 11 9 7 38 38 H 1.09003 * 109.47130 * 60.00082 * 11 9 7 39 39 H 1.08998 * 109.46835 * 179.97438 * 11 9 7 40 40 H 1.08998 * 109.47711 * 294.99687 * 12 9 7 41 41 H 1.09004 * 109.47070 * 55.00583 * 12 9 7 42 42 H 1.08001 * 119.99310 * 0.02562 * 14 13 12 43 43 H 1.07994 * 119.98709 * 180.27470 * 15 14 13 44 44 H 1.08000 * 119.99222 * 179.76890 * 16 15 14 45 45 H 1.07989 * 120.01184 * 180.02562 * 17 16 15 46 46 H 0.97012 * 120.00025 * 264.99832 * 20 2 1 47 47 H 0.96998 * 120.00284 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5613 7 6 4.2675 0.1492 1.7157 8 8 3.7495 1.1140 2.2371 9 6 5.7694 0.0409 1.6559 10 1 6.0900 -0.8583 2.1820 11 6 6.2174 -0.0360 0.1949 12 6 6.3961 1.2701 2.3170 13 6 7.8932 1.1050 2.3672 14 6 8.4955 0.6019 3.5052 15 6 9.8682 0.4458 3.5498 16 6 10.6406 0.8027 2.4601 17 6 10.0403 1.3107 1.3237 18 6 8.6656 1.4622 1.2766 19 17 7.9107 2.0997 -0.1506 20 7 2.0183 -0.6906 -1.1961 21 6 2.1491 -0.0075 -2.3757 22 1 1.8926 1.0406 -2.4241 23 6 2.6124 -0.6617 -3.5090 24 7 2.9254 -1.9388 -3.4498 25 14 2.7901 0.2700 -5.1182 26 1 4.1519 0.8560 -5.2031 27 1 2.5804 -0.6618 -6.2553 28 1 1.7793 1.3563 -5.1755 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1583 2.1371 33 1 1.6053 -1.7198 1.2952 34 1 4.2798 -1.7932 -0.4993 35 1 5.0863 -2.1898 1.0371 36 1 3.4769 -2.8599 0.6779 37 1 5.7709 -0.9115 -0.2765 38 1 5.8967 0.8632 -0.3312 39 1 7.3037 -0.1139 0.1516 40 1 6.1481 2.1600 1.7385 41 1 6.0080 1.3753 3.3301 42 1 7.8929 0.3268 4.3583 43 1 10.3377 0.0486 4.4375 44 1 11.7135 0.6841 2.4968 45 1 10.6437 1.5891 0.4725 46 1 2.2491 -1.6318 -1.1525 47 1 3.2488 -2.3961 -4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571408814.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:57 Heat of formation + Delta-G solvation = -20.088458 kcal Electronic energy + Delta-G solvation = -28017.507344 eV Core-core repulsion = 24225.861533 eV Total energy + Delta-G solvation = -3791.645811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38032 -40.26659 -37.95932 -37.40475 -36.16335 -35.66792 -33.92807 -32.03314 -31.52266 -30.59824 -28.33140 -27.53928 -27.18698 -25.70835 -24.20053 -23.46070 -22.17942 -21.51372 -19.88825 -19.26197 -18.34498 -17.63735 -17.19590 -16.85363 -16.62377 -16.34701 -16.11763 -15.68726 -15.47097 -15.28324 -14.79901 -14.68310 -14.54692 -13.95576 -13.80143 -13.69121 -13.66816 -13.44814 -13.21098 -13.10363 -13.03755 -12.82994 -12.71347 -12.58316 -12.49547 -12.38986 -12.34137 -12.19205 -11.92618 -11.90956 -11.72106 -11.63148 -11.19217 -10.98409 -10.61636 -9.82126 -9.56774 -9.51675 -8.91380 -7.91344 -5.15676 0.21697 0.33604 1.24889 1.43524 1.45059 1.51871 1.66952 2.18159 2.56128 2.71283 3.41760 3.45820 3.77120 3.85185 3.89606 4.01671 4.03840 4.15979 4.19847 4.26013 4.40877 4.42516 4.43294 4.48250 4.65863 4.69326 4.72126 4.72514 4.77547 4.84296 4.86879 4.91035 5.02681 5.04954 5.13008 5.20162 5.26535 5.34458 5.37875 5.41300 5.49764 5.53163 5.53368 5.71322 5.92521 6.31390 6.50615 7.23913 7.39716 8.12677 8.42330 9.30904 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003772 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.760936 B = 7421.654952 C = 8854.573296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.017 0.983 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.080 3.920 7 C 0.513 3.487 8 O -0.585 6.585 9 C -0.087 4.087 10 H 0.120 0.880 11 C -0.149 4.149 12 C -0.058 4.058 13 C -0.081 4.081 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.051 4.051 19 Cl -0.083 7.083 20 N -0.721 5.721 21 C -0.232 4.232 22 H 0.055 0.945 23 C -0.058 4.058 24 N -0.955 5.955 25 Si 0.952 3.048 26 H -0.293 1.293 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.148 0.852 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.140 0.860 46 H 0.379 0.621 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.087 0.177 16.821 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.035 0.965 4 C -0.008 4.008 5 N -0.325 5.325 6 C -0.062 4.062 7 C 0.303 3.697 8 O -0.467 6.467 9 C -0.108 4.108 10 H 0.138 0.862 11 C -0.206 4.206 12 C -0.096 4.096 13 C -0.082 4.082 14 C -0.126 4.126 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.138 4.138 18 C -0.078 4.078 19 Cl -0.054 7.054 20 N -0.363 5.363 21 C -0.364 4.364 22 H 0.073 0.927 23 C -0.251 4.251 24 N -0.606 5.606 25 Si 0.783 3.217 26 H -0.221 1.221 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.166 0.834 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.158 0.842 46 H 0.213 0.787 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.726 0.849 16.829 22.378 hybrid contribution -0.301 0.485 -1.818 1.905 sum 14.425 1.334 15.011 20.861 Atomic orbital electron populations 1.22214 0.96954 1.01499 1.00577 1.20755 0.93199 0.94603 0.87100 0.96487 1.21784 0.79561 1.01882 0.97565 1.47673 1.06523 1.21750 1.56544 1.22073 0.99136 0.86986 0.98013 1.21028 0.90364 0.81505 0.76844 1.90616 1.76066 1.32444 1.47530 1.21154 0.89750 1.01024 0.98832 0.86247 1.22321 1.02166 1.02461 0.93676 1.20324 0.90142 0.97079 1.02040 1.19749 0.95043 0.99814 0.93557 1.21318 0.95876 0.98448 0.96928 1.21618 0.93203 0.98274 0.99630 1.21482 1.01684 0.97590 0.92036 1.21306 0.91815 1.00232 1.00438 1.21102 0.93946 1.03810 0.88909 1.98402 1.82193 1.85595 1.39242 1.42395 1.78346 1.10211 1.05351 1.19367 1.34921 0.93451 0.88690 0.92657 1.25176 1.03119 0.96757 1.00089 1.69729 1.52495 1.09294 1.29042 0.85456 0.77433 0.77708 0.81081 1.22094 1.21789 1.20536 0.92514 0.91539 0.94724 0.89652 0.88809 0.93206 0.89004 0.90174 0.91590 0.94325 0.90512 0.92203 0.89665 0.83404 0.82385 0.82396 0.84190 0.78697 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 9.49 71.98 0.68 -4.83 16 2 C 0.15 6.33 3.20 44.99 0.14 6.47 16 3 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 4 C 0.12 3.90 5.07 86.38 0.44 4.34 16 5 N -0.60 -19.92 2.73 -846.72 -2.31 -22.23 16 6 C 0.08 2.41 7.58 127.77 0.97 3.38 16 7 C 0.51 17.84 7.08 87.66 0.62 18.46 16 8 O -0.59 -23.92 15.50 -3.05 -0.05 -23.97 16 9 C -0.09 -2.41 1.91 -11.54 -0.02 -2.43 16 10 H 0.12 2.62 7.40 -2.39 -0.02 2.60 16 11 C -0.15 -4.64 7.06 71.98 0.51 -4.14 16 12 C -0.06 -1.55 3.97 29.85 0.12 -1.43 16 13 C -0.08 -1.79 4.86 -19.84 -0.10 -1.88 16 14 C -0.11 -1.75 9.68 22.27 0.22 -1.53 16 15 C -0.11 -1.36 10.05 22.27 0.22 -1.14 16 16 C -0.11 -1.44 10.04 22.26 0.22 -1.22 16 17 C -0.12 -2.16 9.83 22.29 0.22 -1.94 16 18 C -0.05 -1.19 5.18 22.33 0.12 -1.07 16 19 Cl -0.08 -2.34 23.12 -2.72 -0.06 -2.40 16 20 N -0.72 -35.25 4.39 -322.95 -1.42 -36.67 16 21 C -0.23 -12.96 9.93 84.03 0.83 -12.13 16 22 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 23 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 24 N -0.95 -55.53 13.06 21.65 0.28 -55.25 16 25 Si 0.95 46.79 29.55 68.60 2.03 48.82 16 26 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 28 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 2.79 7.42 -2.39 -0.02 2.77 16 33 H 0.09 2.74 7.89 -2.38 -0.02 2.72 16 34 H 0.05 1.93 6.20 -2.38 -0.01 1.91 16 35 H 0.09 2.15 6.01 -2.39 -0.01 2.14 16 36 H 0.08 2.15 7.89 -2.39 -0.02 2.13 16 37 H 0.07 2.18 4.53 -2.39 -0.01 2.17 16 38 H 0.04 1.42 6.73 -2.39 -0.02 1.40 16 39 H 0.08 2.15 5.28 -2.39 -0.01 2.14 16 40 H 0.06 1.91 7.13 -2.39 -0.02 1.89 16 41 H 0.08 2.17 7.86 -2.39 -0.02 2.15 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 44 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.14 2.19 8.06 -2.92 -0.02 2.17 16 46 H 0.38 18.90 6.27 -92.70 -0.58 18.32 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -69.04 381.58 4.53 -64.51 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.40 Total: 31.11 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.66 Total: -3.91 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.45 Total: -114.15 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.06 Total: -2.40 kcal Total: -69.04 4.53 -64.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571408814.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.420 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds