Wall clock time and date at job start Tue Mar 31 2020 20:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47430 * 2 1 4 4 C 1.50702 * 109.47108 * 239.99865 * 2 1 3 5 5 H 1.07999 * 120.00375 * 242.70420 * 4 2 1 6 6 C 1.37886 * 119.99906 * 62.70073 * 4 2 1 7 7 N 1.31510 * 119.99835 * 9.43594 * 6 4 2 8 8 Si 1.86801 * 119.99924 * 189.43957 * 6 4 2 9 9 H 1.48501 * 109.47089 * 94.93346 * 8 6 4 10 10 H 1.48501 * 109.46492 * 214.92862 * 8 6 4 11 11 H 1.48494 * 109.47314 * 334.92850 * 8 6 4 12 12 C 1.50699 * 109.47071 * 120.00155 * 2 1 3 13 13 O 1.21284 * 120.00047 * 101.63066 * 12 2 1 14 14 N 1.34773 * 120.00390 * 281.63553 * 12 2 1 15 15 C 1.46919 * 120.63370 * 177.17523 * 14 12 2 16 16 C 1.53197 * 108.77380 * 233.62959 * 15 14 12 17 17 C 1.53042 * 109.30843 * 305.36144 * 16 15 14 18 18 N 1.46508 * 109.45636 * 181.38682 * 17 16 15 19 19 C 1.46768 * 124.34681 * 120.00597 * 18 17 16 20 20 C 1.54479 * 105.46968 * 162.95987 * 19 18 17 21 21 H 1.09000 * 110.96493 * 143.53043 * 20 19 18 22 22 C 1.50695 * 110.97010 * 267.25648 * 20 19 18 23 23 O 1.20825 * 120.00249 * 356.90977 * 22 20 19 24 24 O 1.34234 * 119.99886 * 176.91696 * 22 20 19 25 25 C 1.54631 * 101.76699 * 25.41430 * 20 19 18 26 26 C 1.34413 * 124.34791 * 299.97582 * 18 17 16 27 27 O 1.21279 * 124.94544 * 0.39585 * 26 18 17 28 28 C 1.53042 * 109.54024 * 61.36923 * 17 16 15 29 29 C 1.46931 * 120.62531 * 357.19218 * 14 12 2 30 30 H 1.09000 * 109.47223 * 305.39746 * 1 2 3 31 31 H 1.09001 * 109.46811 * 65.39594 * 1 2 3 32 32 H 1.08996 * 109.47604 * 185.39335 * 1 2 3 33 33 H 0.96999 * 120.00519 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.58847 * 113.84473 * 15 14 12 35 35 H 1.09003 * 109.70569 * 353.48323 * 15 14 12 36 36 H 1.08999 * 109.49772 * 185.41509 * 16 15 14 37 37 H 1.08993 * 109.52503 * 65.32976 * 16 15 14 38 38 H 1.09000 * 109.46224 * 301.35911 * 17 16 15 39 39 H 1.08992 * 110.24506 * 43.95982 * 19 18 17 40 40 H 1.08998 * 110.24319 * 281.95757 * 19 18 17 41 41 H 0.96700 * 116.99676 * 179.97438 * 24 22 20 42 42 H 1.09002 * 110.48403 * 93.88058 * 25 20 19 43 43 H 1.08993 * 110.48402 * 216.52040 * 25 20 19 44 44 H 1.09006 * 109.49434 * 58.57818 * 28 17 16 45 45 H 1.09000 * 109.49820 * 178.68024 * 28 17 16 46 46 H 1.08999 * 109.58753 * 246.15955 * 29 14 12 47 47 H 1.09000 * 109.58777 * 6.44554 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6167 -1.6133 -1.1320 6 6 1.7458 -0.2078 -2.4820 7 7 1.1983 0.9818 -2.6033 8 14 2.1351 -1.2165 -4.0053 9 1 0.9266 -1.9733 -4.4201 10 1 2.5536 -0.3107 -5.1051 11 1 3.2346 -2.1673 -3.7017 12 6 2.0323 -0.7104 1.2304 13 8 2.4341 -1.8520 1.1500 14 7 2.0350 -0.0774 2.4202 15 6 2.4635 -0.7766 3.6393 16 6 1.3615 -0.6466 4.6955 17 6 1.0315 0.8334 4.9028 18 7 0.0011 0.9635 5.9363 19 6 0.1765 1.7027 7.1920 20 6 -1.2506 1.9358 7.7356 21 1 -1.2699 1.8658 8.8232 22 6 -1.7934 3.2636 7.2737 23 8 -1.1001 4.0046 6.6179 24 8 -3.0472 3.6231 7.5910 25 6 -2.0285 0.7648 7.0917 26 6 -1.2263 0.4216 5.8559 27 8 -1.6320 -0.2450 4.9274 28 6 0.5167 1.4316 3.5916 29 6 1.6091 1.3251 2.5229 30 1 -0.3633 0.5953 0.8377 31 1 -0.3633 0.4279 -0.9344 32 1 -0.3634 -1.0230 0.0966 33 1 0.9971 1.3357 -3.4837 34 1 3.3834 -0.3277 4.0138 35 1 2.6348 -1.8301 3.4178 36 1 1.7058 -1.0777 5.6355 37 1 0.4696 -1.1745 4.3582 38 1 1.9297 1.3653 5.2165 39 1 0.6685 2.6567 7.0025 40 1 0.7578 1.1116 7.8996 41 1 -3.3508 4.4842 7.2726 42 1 -2.0664 -0.0870 7.7708 43 1 -3.0351 1.0805 6.8177 44 1 -0.3672 0.8841 3.2642 45 1 0.2598 2.4796 3.7460 46 1 2.4594 1.9454 2.8064 47 1 1.2172 1.6592 1.5622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:16 Heat of formation + Delta-G solvation = -156.586474 kcal Electronic energy + Delta-G solvation = -30763.306611 eV Core-core repulsion = 26525.032637 eV Total energy + Delta-G solvation = -4238.273974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53975 -40.16341 -39.21150 -36.91578 -36.76914 -36.20601 -33.79932 -33.51696 -31.34156 -30.47747 -29.87157 -28.18740 -25.56252 -25.07257 -24.32172 -23.31041 -22.24552 -21.39635 -20.71902 -19.43538 -18.63569 -18.19683 -17.66238 -17.12393 -16.33794 -16.11403 -15.88030 -15.53634 -15.26837 -15.08345 -14.48288 -14.33615 -14.16755 -14.10673 -13.80611 -13.56969 -13.37625 -13.25962 -12.89133 -12.64586 -12.35037 -12.26340 -12.07308 -12.02726 -11.97517 -11.74450 -11.42519 -11.06715 -10.96984 -10.90360 -10.80705 -10.73757 -10.58381 -10.51441 -10.23964 -9.91357 -9.78348 -8.97141 -8.86045 -8.45677 -8.24750 -8.03572 -6.00891 -3.99285 1.66761 2.32720 2.46162 2.70649 3.37712 3.43794 3.50183 3.67103 3.69651 3.78704 3.85006 4.21162 4.52090 4.53595 4.74880 4.76815 4.82017 5.01798 5.08622 5.11993 5.20683 5.25832 5.28974 5.34232 5.46664 5.49820 5.62721 5.77881 5.88174 5.95486 6.00932 6.11327 6.26005 6.30270 6.35714 6.54127 6.69907 6.92100 6.95020 6.99782 7.15992 7.37485 7.48793 7.75539 7.98913 8.02455 8.11611 8.44960 9.07740 9.28591 9.64137 11.09311 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.002747 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.311588 B =10189.671260 C =10747.127634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.071 0.929 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.526 3.474 13 O -0.547 6.547 14 N -0.626 5.626 15 C 0.116 3.884 16 C -0.145 4.145 17 C 0.165 3.835 18 N -0.614 5.614 19 C 0.112 3.888 20 C -0.098 4.098 21 H 0.137 0.863 22 C 0.485 3.515 23 O -0.501 6.501 24 O -0.514 6.514 25 C -0.145 4.145 26 C 0.511 3.489 27 O -0.511 6.511 28 C -0.148 4.148 29 C 0.114 3.886 30 H 0.019 0.981 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.415 0.585 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 7.239 27.332 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.090 0.910 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.197 1.197 12 C 0.317 3.683 13 O -0.423 6.423 14 N -0.362 5.362 15 C -0.008 4.008 16 C -0.185 4.185 17 C 0.064 3.936 18 N -0.348 5.348 19 C -0.011 4.011 20 C -0.117 4.117 21 H 0.155 0.845 22 C 0.326 3.674 23 O -0.387 6.387 24 O -0.326 6.326 25 C -0.186 4.186 26 C 0.297 3.703 27 O -0.385 6.385 28 C -0.187 4.187 29 C -0.010 4.010 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.274 0.726 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.349 6.193 26.521 27.754 hybrid contribution -0.123 0.356 -0.774 0.860 sum -5.471 6.549 25.747 27.124 Atomic orbital electron populations 1.21659 0.96466 0.99215 1.01012 1.18860 0.93871 0.97004 0.89322 0.92973 1.21116 1.33352 1.10444 0.89083 0.91046 1.24932 0.95340 0.94748 0.99006 1.69952 1.43991 1.15706 1.23624 0.86505 0.78726 0.80155 0.82255 1.20670 1.21381 1.19724 1.21990 0.75429 0.86639 0.84193 1.90513 1.47203 1.19132 1.85428 1.48351 1.67922 1.12440 1.07524 1.21335 0.95100 0.99665 0.84684 1.22320 1.01114 0.95742 0.99279 1.21020 0.89145 0.96833 0.86637 1.48440 1.14250 1.52789 1.19327 1.22082 0.94336 0.98610 0.86089 1.21947 0.96293 0.89759 1.03704 0.84520 1.23006 0.79485 0.88350 0.76556 1.90775 1.58861 1.53247 1.35840 1.84483 1.31341 1.43112 1.73654 1.22403 1.00681 0.98328 0.97153 1.20725 0.82356 0.79353 0.87853 1.90799 1.73111 1.38365 1.36265 1.22343 1.00638 1.01486 0.94273 1.21665 0.96120 0.82654 1.00579 0.96224 0.90214 0.94905 0.92999 0.92442 0.89019 0.91240 0.89865 0.89271 0.88382 0.89377 0.72563 0.86158 0.87066 0.89753 0.90806 0.92120 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.82 37.16 0.33 -2.76 16 2 C 0.03 0.79 1.66 -92.92 -0.15 0.64 16 3 H 0.05 1.37 6.75 -51.93 -0.35 1.02 16 4 C -0.50 -14.70 8.32 -34.44 -0.29 -14.99 16 5 H 0.07 2.21 6.90 -52.49 -0.36 1.85 16 6 C 0.06 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -25.75 11.97 55.43 0.66 -25.09 16 8 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.53 12.72 6.87 -10.99 -0.08 12.64 16 13 O -0.55 -14.92 15.07 5.55 0.08 -14.83 16 14 N -0.63 -11.84 2.97 -172.77 -0.51 -12.36 16 15 C 0.12 1.81 6.42 -3.71 -0.02 1.79 16 16 C -0.15 -1.93 5.34 -26.61 -0.14 -2.08 16 17 C 0.17 1.95 2.70 -67.88 -0.18 1.76 16 18 N -0.61 -6.20 2.83 -164.79 -0.47 -6.66 16 19 C 0.11 0.68 6.66 -3.12 -0.02 0.66 16 20 C -0.10 -0.48 3.65 -90.14 -0.33 -0.81 16 21 H 0.14 0.18 8.14 -51.93 -0.42 -0.24 16 22 C 0.48 3.47 7.59 36.00 0.27 3.74 16 23 O -0.50 -5.34 16.27 -18.75 -0.31 -5.64 16 24 O -0.51 -2.61 13.32 -39.27 -0.52 -3.14 16 25 C -0.15 -0.96 6.40 -26.74 -0.17 -1.13 16 26 C 0.51 5.99 7.42 -10.86 -0.08 5.91 16 27 O -0.51 -8.52 15.16 5.56 0.08 -8.43 16 28 C -0.15 -2.12 5.34 -26.61 -0.14 -2.27 16 29 C 0.11 1.82 5.83 -3.71 -0.02 1.80 16 30 H 0.02 0.42 6.89 -51.93 -0.36 0.06 16 31 H 0.08 2.11 6.56 -51.93 -0.34 1.77 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.61 7.03 -51.93 -0.36 1.25 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.39 6.82 -51.93 -0.35 1.04 16 38 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.10 0.67 6.98 -51.93 -0.36 0.30 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.41 0.68 9.10 45.56 0.41 1.10 16 42 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.75 7.81 -51.93 -0.41 0.34 16 44 H 0.08 1.48 6.85 -51.93 -0.36 1.12 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.87 4.75 -51.93 -0.25 1.62 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -38.21 374.60 -7.50 -45.70 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.02 Total: 0.91 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.12 Total: 6.55 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.32 Total: -44.11 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.66 Total: -32.05 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.21 -7.50 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.882 kcal (2) G-P(sol) polarization free energy of solvation -38.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds