Wall clock time and date at job start Tue Mar 31 2020 20:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47430 * 2 1 4 4 C 1.50702 * 109.47108 * 239.99865 * 2 1 3 5 5 H 1.07999 * 120.00375 * 242.70420 * 4 2 1 6 6 C 1.37886 * 119.99906 * 62.70073 * 4 2 1 7 7 N 1.31510 * 119.99835 * 9.43594 * 6 4 2 8 8 Si 1.86801 * 119.99924 * 189.43957 * 6 4 2 9 9 H 1.48501 * 109.47089 * 94.93346 * 8 6 4 10 10 H 1.48501 * 109.46492 * 214.92862 * 8 6 4 11 11 H 1.48494 * 109.47314 * 334.92850 * 8 6 4 12 12 C 1.50699 * 109.47071 * 120.00155 * 2 1 3 13 13 O 1.21284 * 120.00047 * 101.63066 * 12 2 1 14 14 N 1.34773 * 120.00390 * 281.63553 * 12 2 1 15 15 C 1.46919 * 120.63370 * 177.17523 * 14 12 2 16 16 C 1.53197 * 108.77380 * 233.62959 * 15 14 12 17 17 C 1.53042 * 109.30843 * 305.36144 * 16 15 14 18 18 N 1.46508 * 109.45636 * 181.38682 * 17 16 15 19 19 C 1.46768 * 124.34681 * 120.00597 * 18 17 16 20 20 C 1.54479 * 105.46968 * 162.95987 * 19 18 17 21 21 H 1.09000 * 110.96493 * 143.53043 * 20 19 18 22 22 C 1.50695 * 110.97010 * 267.25648 * 20 19 18 23 23 O 1.20825 * 120.00249 * 356.90977 * 22 20 19 24 24 O 1.34234 * 119.99886 * 176.91696 * 22 20 19 25 25 C 1.54631 * 101.76699 * 25.41430 * 20 19 18 26 26 C 1.34413 * 124.34791 * 299.97582 * 18 17 16 27 27 O 1.21279 * 124.94544 * 0.39585 * 26 18 17 28 28 C 1.53042 * 109.54024 * 61.36923 * 17 16 15 29 29 C 1.46931 * 120.62531 * 357.19218 * 14 12 2 30 30 H 1.09000 * 109.47223 * 305.39746 * 1 2 3 31 31 H 1.09001 * 109.46811 * 65.39594 * 1 2 3 32 32 H 1.08996 * 109.47604 * 185.39335 * 1 2 3 33 33 H 0.96999 * 120.00519 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.58847 * 113.84473 * 15 14 12 35 35 H 1.09003 * 109.70569 * 353.48323 * 15 14 12 36 36 H 1.08999 * 109.49772 * 185.41509 * 16 15 14 37 37 H 1.08993 * 109.52503 * 65.32976 * 16 15 14 38 38 H 1.09000 * 109.46224 * 301.35911 * 17 16 15 39 39 H 1.08992 * 110.24506 * 43.95982 * 19 18 17 40 40 H 1.08998 * 110.24319 * 281.95757 * 19 18 17 41 41 H 0.96700 * 116.99676 * 179.97438 * 24 22 20 42 42 H 1.09002 * 110.48403 * 93.88058 * 25 20 19 43 43 H 1.08993 * 110.48402 * 216.52040 * 25 20 19 44 44 H 1.09006 * 109.49434 * 58.57818 * 28 17 16 45 45 H 1.09000 * 109.49820 * 178.68024 * 28 17 16 46 46 H 1.08999 * 109.58753 * 246.15955 * 29 14 12 47 47 H 1.09000 * 109.58777 * 6.44554 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6167 -1.6133 -1.1320 6 6 1.7458 -0.2078 -2.4820 7 7 1.1983 0.9818 -2.6033 8 14 2.1351 -1.2165 -4.0053 9 1 0.9266 -1.9733 -4.4201 10 1 2.5536 -0.3107 -5.1051 11 1 3.2346 -2.1673 -3.7017 12 6 2.0323 -0.7104 1.2304 13 8 2.4341 -1.8520 1.1500 14 7 2.0350 -0.0774 2.4202 15 6 2.4635 -0.7766 3.6393 16 6 1.3615 -0.6466 4.6955 17 6 1.0315 0.8334 4.9028 18 7 0.0011 0.9635 5.9363 19 6 0.1765 1.7027 7.1920 20 6 -1.2506 1.9358 7.7356 21 1 -1.2699 1.8658 8.8232 22 6 -1.7934 3.2636 7.2737 23 8 -1.1001 4.0046 6.6179 24 8 -3.0472 3.6231 7.5910 25 6 -2.0285 0.7648 7.0917 26 6 -1.2263 0.4216 5.8559 27 8 -1.6320 -0.2450 4.9274 28 6 0.5167 1.4316 3.5916 29 6 1.6091 1.3251 2.5229 30 1 -0.3633 0.5953 0.8377 31 1 -0.3633 0.4279 -0.9344 32 1 -0.3634 -1.0230 0.0966 33 1 0.9971 1.3357 -3.4837 34 1 3.3834 -0.3277 4.0138 35 1 2.6348 -1.8301 3.4178 36 1 1.7058 -1.0777 5.6355 37 1 0.4696 -1.1745 4.3582 38 1 1.9297 1.3653 5.2165 39 1 0.6685 2.6567 7.0025 40 1 0.7578 1.1116 7.8996 41 1 -3.3508 4.4842 7.2726 42 1 -2.0664 -0.0870 7.7708 43 1 -3.0351 1.0805 6.8177 44 1 -0.3672 0.8841 3.2642 45 1 0.2598 2.4796 3.7460 46 1 2.4594 1.9454 2.8064 47 1 1.2172 1.6592 1.5622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603119333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:15 Heat of formation + Delta-G solvation = -184.956896 kcal Electronic energy + Delta-G solvation = -30764.536845 eV Core-core repulsion = 26525.032637 eV Total energy + Delta-G solvation = -4239.504208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21386 -41.18272 -40.50571 -38.27432 -37.50481 -36.91699 -35.88331 -34.69394 -32.99640 -31.77850 -31.31301 -28.76469 -27.27888 -26.65563 -25.19835 -24.61869 -23.78911 -22.44834 -21.53358 -20.50168 -19.69068 -19.04136 -18.49032 -18.18543 -18.03395 -17.50608 -17.00502 -16.76132 -16.27447 -16.19412 -16.06765 -15.91599 -15.35980 -15.09999 -14.79483 -14.72777 -14.38279 -14.32288 -14.05837 -13.99207 -13.70612 -13.50856 -13.22337 -13.07523 -12.94875 -12.83626 -12.76601 -12.59240 -12.55724 -12.46484 -12.34276 -12.24887 -12.06157 -11.87431 -11.75480 -11.51778 -11.13231 -10.70568 -10.56863 -10.31034 -9.69948 -9.58863 -8.21973 -6.28041 1.17083 1.37238 1.39102 1.50838 1.54661 1.81530 1.96134 2.09996 2.17110 2.44059 3.09683 3.21812 3.28363 3.65737 3.74555 3.77871 3.99768 4.00991 4.17534 4.21903 4.28090 4.39529 4.41723 4.51293 4.57536 4.60639 4.65192 4.72225 4.77857 4.80331 4.82866 4.84702 4.89860 4.92009 4.95710 5.11118 5.21255 5.35700 5.60542 5.62691 5.64433 5.66736 5.82801 6.11990 6.18041 6.53640 6.78804 6.97046 7.16197 7.35117 7.45991 8.87432 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.002747 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.311588 B =10189.671260 C =10747.127634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.618 5.618 15 C 0.112 3.888 16 C -0.132 4.132 17 C 0.168 3.832 18 N -0.613 5.613 19 C 0.107 3.893 20 C -0.085 4.085 21 H 0.186 0.814 22 C 0.483 3.517 23 O -0.543 6.543 24 O -0.510 6.510 25 C -0.134 4.134 26 C 0.493 3.507 27 O -0.575 6.575 28 C -0.138 4.138 29 C 0.110 3.890 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.428 0.572 42 H 0.152 0.848 43 H 0.108 0.892 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 8.462 30.662 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.470 6.470 14 N -0.352 5.352 15 C -0.011 4.011 16 C -0.171 4.171 17 C 0.065 3.935 18 N -0.345 5.345 19 C -0.014 4.014 20 C -0.104 4.104 21 H 0.204 0.796 22 C 0.326 3.674 23 O -0.433 6.433 24 O -0.324 6.324 25 C -0.174 4.174 26 C 0.282 3.718 27 O -0.455 6.455 28 C -0.177 4.177 29 C -0.013 4.013 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.290 0.710 42 H 0.170 0.830 43 H 0.126 0.874 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.918 7.494 29.937 31.251 hybrid contribution -0.315 0.071 -1.742 1.771 sum -5.233 7.565 28.196 29.658 Atomic orbital electron populations 1.21448 0.95986 0.98395 1.00846 1.18739 0.94191 0.96412 0.89759 0.93586 1.21235 1.34370 1.10264 0.91166 0.93629 1.25603 0.94996 0.95681 1.01405 1.70013 1.43838 1.16364 1.24594 0.85605 0.78469 0.78865 0.79115 1.20017 1.19665 1.20235 1.21599 0.75606 0.86111 0.85503 1.90478 1.49432 1.20680 1.86379 1.48287 1.66282 1.13516 1.07096 1.21598 0.97550 0.98249 0.83653 1.22172 0.98439 0.96884 0.99586 1.20919 0.90826 0.95649 0.86095 1.48526 1.13370 1.52455 1.20193 1.22438 0.95590 0.98633 0.84755 1.22115 0.94745 0.87372 1.06181 0.79641 1.23552 0.79484 0.88817 0.75514 1.90765 1.59954 1.54813 1.37805 1.84464 1.30492 1.44159 1.73258 1.22388 0.99639 1.00153 0.95205 1.21692 0.83207 0.78331 0.88548 1.90772 1.74451 1.41250 1.39004 1.22191 0.98398 1.01761 0.95337 1.21839 0.97990 0.81189 1.00235 0.94019 0.92064 0.96374 0.92455 0.88606 0.91546 0.87843 0.93950 0.85700 0.88677 0.85439 0.71020 0.83012 0.87401 0.93660 0.89664 0.88499 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 8.82 71.98 0.63 -4.99 16 2 C 0.03 1.63 1.66 -12.29 -0.02 1.61 16 3 H 0.05 2.53 6.75 -2.39 -0.02 2.51 16 4 C -0.53 -32.51 8.32 25.60 0.21 -32.30 16 5 H 0.05 2.97 6.90 -2.91 -0.02 2.95 16 6 C 0.02 1.33 5.15 84.66 0.44 1.77 16 7 N -0.91 -53.17 11.97 21.45 0.26 -52.91 16 8 Si 0.95 46.61 29.55 68.60 2.03 48.64 16 9 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 12 C 0.52 26.31 6.87 87.66 0.60 26.91 16 13 O -0.59 -33.87 15.07 -3.04 -0.05 -33.91 16 14 N -0.62 -23.66 2.97 -818.91 -2.43 -26.09 16 15 C 0.11 3.40 6.42 86.37 0.55 3.95 16 16 C -0.13 -3.33 5.34 30.67 0.16 -3.16 16 17 C 0.17 3.56 2.70 45.02 0.12 3.68 16 18 N -0.61 -10.78 2.83 -793.87 -2.25 -13.02 16 19 C 0.11 0.82 6.66 86.83 0.58 1.40 16 20 C -0.09 -0.46 3.65 -10.48 -0.04 -0.50 16 21 H 0.19 -0.73 8.14 -2.39 -0.02 -0.75 16 22 C 0.48 5.59 7.59 71.23 0.54 6.13 16 23 O -0.54 -10.63 16.27 21.97 0.36 -10.27 16 24 O -0.51 -3.90 13.32 -51.45 -0.69 -4.59 16 25 C -0.13 -1.36 6.40 30.59 0.20 -1.16 16 26 C 0.49 11.02 7.42 87.90 0.65 11.67 16 27 O -0.58 -19.95 15.16 -3.03 -0.05 -19.99 16 28 C -0.14 -3.88 5.34 30.67 0.16 -3.72 16 29 C 0.11 3.49 5.83 86.36 0.50 3.99 16 30 H 0.04 1.91 6.89 -2.39 -0.02 1.89 16 31 H 0.06 3.37 6.56 -2.39 -0.02 3.35 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.38 7.03 -2.39 -0.02 2.36 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.45 6.82 -2.39 -0.02 1.43 16 38 H 0.13 1.84 8.07 -2.39 -0.02 1.82 16 39 H 0.09 0.89 6.98 -2.39 -0.02 0.88 16 40 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.43 0.62 9.10 -74.06 -0.67 -0.05 16 42 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.11 1.22 7.81 -2.39 -0.02 1.21 16 44 H 0.04 1.65 6.85 -2.38 -0.02 1.64 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.08 2.90 4.75 -2.39 -0.01 2.89 16 Total: -1.00 -90.59 374.60 2.82 -87.76 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.34 Total: 9.11 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 5.30 Total: 15.28 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -4.42 Total: -92.03 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -0.42 Total: -68.77 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -90.59 2.82 -87.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.193 kcal (2) G-P(sol) polarization free energy of solvation -90.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds