Wall clock time and date at job start Tue Mar 31 2020 20:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35985 * 117.00482 * 2 1 4 4 C 1.38720 * 119.99587 * 0.02562 * 3 2 1 5 5 C 1.38109 * 119.99990 * 180.02562 * 4 3 2 6 6 C 1.38726 * 119.99919 * 359.97438 * 5 4 3 7 7 O 1.35986 * 119.99985 * 180.02562 * 6 5 4 8 8 C 1.42895 * 116.99782 * 359.97438 * 7 6 5 9 9 C 1.38679 * 119.99769 * 359.97438 * 6 5 4 10 10 C 1.50700 * 119.99796 * 179.97438 * 9 6 5 11 11 H 1.09004 * 109.46716 * 35.01107 * 10 9 6 12 12 O 1.42899 * 109.46810 * 155.00423 * 10 9 6 13 13 C 1.52992 * 109.47798 * 275.00708 * 10 9 6 14 14 H 1.09002 * 109.47103 * 64.99779 * 13 10 9 15 15 C 1.52997 * 109.47482 * 185.00026 * 13 10 9 16 16 N 1.46497 * 109.47081 * 305.00302 * 13 10 9 17 17 C 1.34777 * 120.00376 * 155.00022 * 16 13 10 18 18 O 1.21585 * 120.00132 * 359.97438 * 17 16 13 19 19 N 1.34775 * 120.00044 * 179.97438 * 17 16 13 20 20 C 1.46507 * 120.00100 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47234 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00055 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00111 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99634 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00215 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47440 * 59.99493 * 25 23 21 27 27 H 1.48498 * 109.47170 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47238 * 299.99570 * 25 23 21 29 29 C 1.38150 * 120.00225 * 0.28470 * 9 6 5 30 30 H 1.09005 * 109.47037 * 59.99668 * 1 2 3 31 31 H 1.08994 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46804 * 300.00224 * 1 2 3 33 33 H 1.08000 * 120.00243 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00010 * 179.97438 * 5 4 3 35 35 H 1.08992 * 109.47489 * 60.00016 * 8 7 6 36 36 H 1.09004 * 109.46760 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.47232 * 299.99653 * 8 7 6 38 38 H 0.96695 * 114.00504 * 60.00287 * 12 10 9 39 39 H 1.09002 * 109.47153 * 59.99783 * 15 13 10 40 40 H 1.09001 * 109.46832 * 299.99974 * 15 13 10 41 41 H 1.09004 * 109.47261 * 179.97438 * 15 13 10 42 42 H 0.97006 * 119.99921 * 334.99446 * 16 13 10 43 43 H 0.97006 * 120.00254 * 359.97438 * 19 17 16 44 44 H 1.08996 * 109.46820 * 299.99835 * 20 19 17 45 45 H 1.08997 * 109.46659 * 60.00104 * 20 19 17 46 46 H 0.97003 * 119.99971 * 180.02562 * 24 23 21 47 47 H 1.08000 * 120.00164 * 179.69471 * 29 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0000 6 6 3.3033 3.6781 -0.0005 7 8 3.9207 4.8897 -0.0005 8 6 3.0808 6.0458 -0.0005 9 6 4.0585 2.5150 0.0000 10 6 5.5635 2.5938 -0.0012 11 1 5.8827 3.4540 0.5874 12 8 6.1034 1.3998 0.5689 13 6 6.0653 2.7449 -1.4385 14 1 5.7263 3.6985 -1.8434 15 6 7.5945 2.6997 -1.4523 16 7 5.5370 1.6512 -2.2577 17 6 5.4010 1.8112 -3.5890 18 8 5.7163 2.8635 -4.1102 19 7 4.9155 0.8049 -4.3425 20 6 4.7672 0.9790 -5.7896 21 6 4.2089 -0.2841 -6.3930 22 1 3.9872 -1.1319 -5.7618 23 6 3.9822 -0.3577 -7.7510 24 7 4.2526 0.6746 -8.5197 25 14 3.2896 -1.9230 -8.4988 26 1 1.9635 -2.2144 -7.8973 27 1 3.1393 -1.7465 -9.9656 28 1 4.2149 -3.0526 -8.2279 29 6 3.4313 1.2841 -0.0049 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 0.2124 2.3185 0.0005 34 1 1.3298 4.5113 0.0000 35 1 2.4515 6.0377 0.8894 36 1 3.6987 6.9438 -0.0010 37 1 2.4515 6.0377 -0.8906 38 1 5.8596 0.5928 0.0954 39 1 7.9335 1.7461 -1.0474 40 1 7.9875 3.5135 -0.8429 41 1 7.9520 2.8069 -2.4765 42 1 5.2852 0.8118 -1.8418 43 1 4.6643 -0.0348 -3.9268 44 1 4.0878 1.8079 -5.9880 45 1 5.7403 1.1930 -6.2314 46 1 4.0928 0.6229 -9.4750 47 1 4.0195 0.3783 -0.0094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634809123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:53 Heat of formation + Delta-G solvation = -128.297016 kcal Electronic energy + Delta-G solvation = -30478.142192 eV Core-core repulsion = 26241.094942 eV Total energy + Delta-G solvation = -4237.047251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94403 -39.47839 -39.07856 -37.93146 -36.13467 -34.46606 -33.81124 -32.33110 -31.63428 -30.53887 -29.81345 -27.68827 -27.05809 -26.90145 -26.12368 -23.01680 -22.29743 -21.87922 -20.88099 -20.01699 -18.72487 -18.22223 -17.75391 -17.14518 -16.76859 -16.02062 -15.92146 -15.68970 -15.61185 -15.00949 -14.83631 -14.81835 -14.57313 -14.41698 -14.20072 -13.60039 -13.14688 -13.04283 -13.00768 -12.97917 -12.61188 -12.46565 -12.06048 -11.94503 -11.90699 -11.78752 -11.72627 -11.59928 -11.19795 -10.96552 -10.90260 -10.81946 -10.57817 -10.26851 -10.21016 -9.34303 -9.32332 -9.07831 -8.71987 -8.63649 -7.86267 -7.69510 -6.11604 -4.17797 1.01816 1.30670 3.05771 3.17806 3.27856 3.30996 3.33168 3.39920 3.50833 4.03433 4.22565 4.34761 4.36842 4.50359 4.74409 4.85713 4.88975 4.93957 4.97842 4.98660 5.05771 5.15697 5.22395 5.24328 5.28780 5.31544 5.32707 5.51197 5.55993 5.63666 5.89257 5.98642 6.05240 6.10459 6.19904 6.35302 6.45216 6.93644 7.07384 7.16722 7.28327 7.39055 7.57825 7.60122 7.62563 7.95519 8.09058 8.81349 9.00939 9.39763 9.54323 10.98661 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.009688 B = 0.003560 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.397268 B = 7864.352228 C = 9140.500269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.100 3.900 4 C -0.169 4.169 5 C -0.164 4.164 6 C 0.104 3.896 7 O -0.313 6.313 8 C 0.028 3.972 9 C -0.100 4.100 10 C 0.152 3.848 11 H 0.126 0.874 12 O -0.549 6.549 13 C 0.139 3.861 14 H 0.098 0.902 15 C -0.157 4.157 16 N -0.750 5.750 17 C 0.697 3.303 18 O -0.599 6.599 19 N -0.730 5.730 20 C 0.269 3.731 21 C -0.541 4.541 22 H 0.061 0.939 23 C 0.064 3.936 24 N -0.886 5.886 25 Si 0.903 3.097 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.275 1.275 29 C -0.106 4.106 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.371 0.629 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.383 0.617 43 H 0.385 0.615 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.266 0.734 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 4.379 22.860 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.055 3.945 4 C -0.188 4.188 5 C -0.183 4.183 6 C 0.058 3.942 7 O -0.227 6.227 8 C -0.067 4.067 9 C -0.101 4.101 10 C 0.092 3.908 11 H 0.143 0.857 12 O -0.354 6.354 13 C 0.033 3.967 14 H 0.116 0.884 15 C -0.215 4.215 16 N -0.408 5.408 17 C 0.396 3.604 18 O -0.478 6.478 19 N -0.382 5.382 20 C 0.147 3.853 21 C -0.579 4.579 22 H 0.080 0.920 23 C -0.140 4.140 24 N -0.524 5.524 25 Si 0.730 3.270 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.219 0.781 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.216 0.784 43 H 0.217 0.783 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.618 5.716 22.530 23.698 hybrid contribution -1.642 -1.662 -0.624 2.419 sum -6.260 4.053 21.906 23.141 Atomic orbital electron populations 1.23043 0.78474 1.04002 1.01175 1.86082 1.21257 1.26461 1.89115 1.18760 0.92023 0.84339 0.99390 1.21014 1.00029 0.91705 1.06016 1.20985 0.93133 0.98460 1.05703 1.18545 0.90699 0.85142 0.99771 1.86059 1.35494 1.12115 1.89031 1.23046 0.95963 0.86504 1.01162 1.19546 0.96508 0.90369 1.03710 1.21048 0.86770 0.89140 0.93856 0.85667 1.86636 1.75675 1.16171 1.56930 1.21319 0.94040 0.92430 0.88956 0.88433 1.22089 0.94678 1.02108 1.02653 1.45156 1.71847 1.17191 1.06631 1.16088 0.78908 0.84759 0.80600 1.90861 1.57599 1.27411 1.71946 1.45699 1.67179 1.14695 1.10592 1.18940 0.97068 0.96996 0.72249 1.21200 1.44463 0.99231 0.93010 0.92043 1.24933 0.95378 0.96792 0.96877 1.69974 1.47181 1.29785 1.05427 0.86488 0.79468 0.82953 0.78050 1.20155 1.21108 1.20073 1.19826 0.91464 0.97062 1.04071 0.92546 0.88191 0.92948 0.85206 0.85097 0.92912 0.88119 0.92575 0.78099 0.92067 0.92054 0.91679 0.78359 0.78303 0.95920 0.95806 0.92472 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.68 10.50 -19.69 -0.21 -3.89 16 3 C 0.10 1.22 6.69 -39.24 -0.26 0.95 16 4 C -0.17 -1.88 9.03 -39.45 -0.36 -2.23 16 5 C -0.16 -1.83 9.03 -39.45 -0.36 -2.19 16 6 C 0.10 1.29 6.66 -39.24 -0.26 1.02 16 7 O -0.31 -3.64 9.63 -19.69 -0.19 -3.83 16 8 C 0.03 0.23 9.81 101.05 0.99 1.22 16 9 C -0.10 -1.23 4.65 -104.49 -0.49 -1.72 16 10 C 0.15 1.76 2.80 -27.89 -0.08 1.69 16 11 H 0.13 1.41 7.69 -51.93 -0.40 1.01 16 12 O -0.55 -5.90 12.12 -35.23 -0.43 -6.32 16 13 C 0.14 1.94 2.47 -67.94 -0.17 1.77 16 14 H 0.10 1.62 7.58 -51.93 -0.39 1.23 16 15 C -0.16 -2.08 9.29 37.16 0.35 -1.73 16 16 N -0.75 -11.52 4.44 -58.68 -0.26 -11.78 16 17 C 0.70 14.73 8.53 -86.92 -0.74 13.99 16 18 O -0.60 -15.25 16.01 5.29 0.08 -15.17 16 19 N -0.73 -16.05 5.55 -66.41 -0.37 -16.42 16 20 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 21 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 22 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 23 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 25 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C -0.11 -1.25 8.28 -39.45 -0.33 -1.58 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 33 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 34 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 35 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 38 H 0.37 3.14 6.08 45.56 0.28 3.41 16 39 H 0.06 0.75 7.56 -51.93 -0.39 0.36 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.38 4.80 6.30 -40.82 -0.26 4.54 16 43 H 0.39 7.33 8.34 -40.82 -0.34 6.99 16 44 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.13 1.32 6.13 -52.49 -0.32 1.00 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -35.71 387.25 -7.12 -42.83 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.15 Total: 12.25 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.15 Total: 6.16 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.11 Total: -53.94 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.74 Total: -29.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.71 -7.12 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634809123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.471 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds