Wall clock time and date at job start Tue Mar 31 2020 21:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.53005 * 109.46946 * 240.00739 * 2 1 3 5 5 N 1.46505 * 109.47252 * 64.99753 * 4 2 1 6 6 C 1.36931 * 119.99863 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99989 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00009 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00321 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99557 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47174 * 90.00034 * 10 8 6 12 12 H 1.48507 * 109.46679 * 209.99443 * 10 8 6 13 13 H 1.48498 * 109.47171 * 329.99564 * 10 8 6 14 14 C 1.52996 * 109.47218 * 120.00897 * 2 1 3 15 15 N 1.46498 * 109.46697 * 294.99407 * 14 2 1 16 16 C 1.34775 * 119.99763 * 180.02562 * 15 14 2 17 17 O 1.21281 * 120.00389 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00150 * 179.97438 * 16 15 14 19 19 H 1.08996 * 115.54557 * 34.33679 * 18 16 15 20 20 C 1.52991 * 117.52152 * 248.63072 * 18 16 15 21 21 C 1.53003 * 60.00317 * 252.51844 * 20 18 16 22 22 H 1.09000 * 117.52029 * 107.47707 * 21 20 18 23 23 C 1.50693 * 117.50025 * 252.51560 * 21 20 18 24 24 C 1.38240 * 119.98760 * 8.86722 * 23 21 20 25 25 C 1.38182 * 120.04837 * 180.30301 * 24 23 21 26 26 C 1.38497 * 120.02785 * 359.72502 * 25 24 23 27 27 F 1.35103 * 120.01374 * 180.02562 * 26 25 24 28 28 C 1.38397 * 119.97415 * 0.02562 * 26 25 24 29 29 C 1.38438 * 119.94925 * 0.02562 * 28 26 25 30 30 F 1.35104 * 120.01364 * 180.02562 * 29 28 26 31 31 H 1.09008 * 109.46957 * 299.99726 * 1 2 3 32 32 H 1.08998 * 109.47336 * 59.99260 * 1 2 3 33 33 H 1.08989 * 109.47256 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47008 * 185.00120 * 4 2 1 35 35 H 1.09000 * 109.47049 * 304.99863 * 4 2 1 36 36 H 0.97000 * 119.99782 * 0.02562 * 5 4 2 37 37 H 0.96997 * 120.00215 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.47070 * 174.99770 * 14 2 1 39 39 H 1.08991 * 109.47347 * 54.99733 * 14 2 1 40 40 H 0.97002 * 120.00534 * 0.02562 * 15 14 2 41 41 H 1.08998 * 117.50053 * 145.03078 * 20 18 16 42 42 H 1.09006 * 117.49768 * 0.02562 * 20 18 16 43 43 H 1.07996 * 119.97655 * 0.03092 * 24 23 21 44 44 H 1.08004 * 119.98450 * 179.70088 * 25 24 23 45 45 H 1.07997 * 120.02749 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 1.6524 0.0356 -2.4425 6 6 2.0009 -0.4204 -3.6857 7 1 2.5612 -1.3382 -3.7867 8 6 1.6332 0.2963 -4.8162 9 7 1.9678 -0.1423 -6.0112 10 14 0.6634 1.8833 -4.6414 11 1 1.6030 3.0274 -4.5255 12 1 -0.1993 2.0702 -5.8356 13 1 -0.1844 1.8137 -3.4242 14 6 2.0400 -0.7214 1.2491 15 7 1.6526 0.0351 2.4423 16 6 1.9966 -0.4134 3.6657 17 8 2.6265 -1.4436 3.7790 18 6 1.5985 0.3651 4.8932 19 1 0.6372 0.8754 4.8349 20 6 2.7126 1.0460 5.6906 21 6 2.0189 -0.1964 6.2530 22 1 2.5834 -1.1288 6.2598 23 6 1.0721 -0.0013 7.4091 24 6 0.7163 1.2751 7.8030 25 6 -0.1469 1.4556 8.8668 26 6 -0.6610 0.3575 9.5362 27 9 -1.5053 0.5343 10.5760 28 6 -0.3095 -0.9210 9.1395 29 6 0.5561 -1.1006 8.0741 30 9 0.8997 -2.3480 7.6854 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7197 -1.2954 36 1 1.1488 0.8597 -2.3517 37 1 1.7111 0.3588 -6.8011 38 1 3.1264 -0.7997 1.2054 39 1 1.6054 -1.7199 1.2949 40 1 1.1484 0.8589 2.3518 41 1 2.4843 2.0044 6.1569 42 1 3.7339 0.9313 5.3273 43 1 1.1166 2.1320 7.2816 44 1 -0.4204 2.4534 9.1768 45 1 -0.7096 -1.7778 9.6610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666588760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:20 Heat of formation + Delta-G solvation = -70.777460 kcal Electronic energy + Delta-G solvation = -27582.883758 eV Core-core repulsion = 23237.243227 eV Total energy + Delta-G solvation = -4345.640531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.52105 -49.41669 -40.58253 -39.40964 -37.37900 -36.42885 -34.52162 -32.54138 -31.44638 -30.88718 -30.49771 -27.04294 -26.00576 -24.71867 -24.03785 -23.29367 -21.94727 -21.25493 -20.59428 -19.88975 -18.84271 -18.08926 -17.58941 -17.23690 -16.64760 -16.44769 -16.16350 -15.93494 -15.75388 -15.53953 -15.02744 -14.87069 -14.78328 -14.42041 -14.15913 -13.83593 -13.69007 -13.25539 -13.06034 -12.84633 -12.68741 -12.61712 -12.49451 -12.24044 -12.11240 -11.93665 -11.48118 -11.23540 -11.08562 -10.99808 -10.78426 -10.65672 -10.62518 -10.17957 -9.99798 -9.64002 -9.60019 -9.15681 -9.03558 -8.92431 -7.25590 -5.78554 -3.14348 0.31040 0.41992 2.25497 2.68525 2.97407 3.30566 3.33449 3.35879 3.42347 3.46813 3.84422 3.89772 3.97736 4.25131 4.28110 4.36679 4.55170 4.56362 4.63376 4.73175 4.85176 5.05420 5.07935 5.20386 5.24067 5.25867 5.36390 5.40065 5.46188 5.49691 5.51969 5.63034 5.70854 5.78951 5.83758 5.85735 6.05504 6.17210 6.20156 6.34904 6.42757 6.62776 6.72123 7.35327 7.97702 8.06762 8.40253 9.19063 9.91076 10.10754 11.39872 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.001723 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.605640 B =16244.770659 C =16709.069451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.164 3.836 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.720 5.720 16 C 0.539 3.461 17 O -0.538 6.538 18 C -0.174 4.174 19 H 0.127 0.873 20 C -0.139 4.139 21 C -0.088 4.088 22 H 0.134 0.866 23 C -0.096 4.096 24 C -0.063 4.063 25 C -0.160 4.160 26 C 0.126 3.874 27 F -0.131 7.131 28 C -0.190 4.190 29 C 0.142 3.858 30 F -0.123 7.123 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 5.556 34.969 35.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.325 3.675 17 O -0.415 6.415 18 C -0.195 4.195 19 H 0.145 0.855 20 C -0.176 4.176 21 C -0.106 4.106 22 H 0.151 0.849 23 C -0.097 4.097 24 C -0.081 4.081 25 C -0.179 4.179 26 C 0.107 3.893 27 F -0.110 7.110 28 C -0.210 4.210 29 C 0.123 3.877 30 F -0.101 7.101 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.235 0.765 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.861 4.598 34.856 35.369 hybrid contribution -1.206 1.313 -0.012 1.783 sum -5.067 5.911 34.843 35.703 Atomic orbital electron populations 1.21821 0.94762 1.02305 1.01245 1.21604 0.96631 1.00540 0.94559 0.90560 1.20557 0.97232 0.94254 0.84294 1.42678 1.67706 1.27268 1.02344 1.19069 1.29421 1.07189 0.81754 0.89166 1.24681 1.00779 0.98652 0.95099 1.69699 1.51312 1.40218 0.96927 0.86542 0.80228 0.84839 0.76834 1.21097 1.21715 1.20411 1.21420 1.00352 0.95325 0.82615 1.45964 1.57611 1.27805 1.05729 1.19512 0.79254 0.85021 0.83741 1.90727 1.40019 1.24181 1.86558 1.22395 1.01696 1.04560 0.90867 0.85498 1.23169 0.97385 0.96324 1.00700 1.20914 0.99791 1.00556 0.89350 0.84864 1.19242 1.00001 0.92386 0.98058 1.20828 0.95467 0.96410 0.95385 1.21202 1.00146 0.98860 0.97646 1.17320 0.91774 0.93311 0.86920 1.91547 1.68217 1.96104 1.55111 1.21060 1.02289 0.97869 0.99738 1.17088 0.96368 0.79721 0.94555 1.91575 1.90326 1.38254 1.89967 0.93664 0.91759 0.92366 0.95199 0.95138 0.80645 0.93046 0.91077 0.91089 0.76461 0.87163 0.87183 0.83594 0.83768 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.94 37.16 0.33 -1.56 16 2 C -0.11 -1.58 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.75 -17.48 5.13 -59.90 -0.31 -17.79 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 10 Si 0.89 21.77 27.74 -169.99 -4.71 17.06 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 14 C 0.13 1.59 5.06 -4.04 -0.02 1.57 16 15 N -0.72 -7.39 5.28 -60.30 -0.32 -7.71 16 16 C 0.54 6.12 7.61 -10.98 -0.08 6.04 16 17 O -0.54 -8.34 16.26 5.56 0.09 -8.25 16 18 C -0.17 -1.32 5.82 -91.77 -0.53 -1.85 16 19 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.14 -0.80 9.56 -26.73 -0.26 -1.06 16 21 C -0.09 -0.69 5.31 -91.77 -0.49 -1.18 16 22 H 0.13 1.34 7.39 -51.93 -0.38 0.96 16 23 C -0.10 -0.67 5.62 -104.55 -0.59 -1.26 16 24 C -0.06 -0.31 9.29 -39.60 -0.37 -0.67 16 25 C -0.16 -0.80 10.02 -39.51 -0.40 -1.20 16 26 C 0.13 0.83 7.30 -39.43 -0.29 0.55 16 27 F -0.13 -0.97 17.27 2.25 0.04 -0.93 16 28 C -0.19 -1.32 10.01 -39.45 -0.39 -1.72 16 29 C 0.14 1.16 7.24 -39.43 -0.29 0.87 16 30 F -0.12 -1.23 16.61 2.25 0.04 -1.19 16 31 H 0.04 0.46 7.18 -51.92 -0.37 0.09 16 32 H 0.06 0.98 7.18 -51.93 -0.37 0.60 16 33 H 0.06 0.78 8.14 -51.94 -0.42 0.36 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.36 8.06 4.71 -40.82 -0.19 7.87 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.40 3.11 7.65 -40.82 -0.31 2.80 16 41 H 0.11 0.34 6.18 -51.93 -0.32 0.02 16 42 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.15 0.35 6.02 -52.49 -0.32 0.03 16 44 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 45 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -34.24 382.81 -8.59 -42.83 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.09 Total: 6.02 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.87 Total: -7.29 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.15 Total: -54.01 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.08 Total: -2.13 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.24 -8.59 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666588760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.952 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds