Wall clock time and date at job start Tue Mar 31 2020 21:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21551 * 119.99633 * 359.97438 * 16 15 14 18 18 C 1.47845 * 120.00323 * 179.97438 * 16 15 14 19 19 C 1.39576 * 120.14279 * 359.72683 * 18 16 15 20 20 C 1.37957 * 119.84831 * 179.79074 * 19 18 16 21 21 C 1.38354 * 120.14752 * 0.48220 * 20 19 18 22 22 P 1.81405 * 119.85481 * 179.72668 * 21 20 19 23 23 C 1.82300 * 109.46782 * 330.01845 * 22 21 20 24 24 C 1.82295 * 109.47259 * 90.01816 * 22 21 20 25 25 O 1.48001 * 109.46904 * 210.02412 * 22 21 20 26 26 C 1.38355 * 120.29470 * 359.74393 * 21 20 19 27 27 C 1.37957 * 120.14154 * 0.02616 * 26 21 20 28 28 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 29 29 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 31 31 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 32 32 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 0.97000 * 120.00663 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 36 36 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 37 37 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 38 38 H 1.08000 * 120.07628 * 359.97438 * 19 18 16 39 39 H 1.08007 * 119.92444 * 180.23146 * 20 19 18 40 40 H 1.09005 * 109.47280 * 60.00491 * 23 22 21 41 41 H 1.09001 * 109.46991 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.47475 * 300.00166 * 23 22 21 43 43 H 1.08998 * 109.46958 * 60.00544 * 24 22 21 44 44 H 1.08999 * 109.47086 * 179.97438 * 24 22 21 45 45 H 1.08998 * 109.47521 * 300.00234 * 24 22 21 46 46 H 1.08001 * 119.93277 * 179.97438 * 26 21 20 47 47 H 1.08009 * 120.07402 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 1.9638 -0.1456 -6.0113 10 14 0.6521 1.8757 -4.6422 11 1 1.5865 3.0243 -4.5285 12 1 -0.2127 2.0574 -5.8358 13 1 -0.1942 1.8035 -3.4242 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6261 -1.4464 3.7796 18 6 1.6047 0.3503 4.8700 19 6 0.8854 1.5396 4.7427 20 6 0.5202 2.2453 5.8705 21 6 0.8740 1.7816 7.1252 22 15 0.3960 2.7197 8.6024 23 6 0.3064 4.4939 8.1929 24 6 -1.2339 2.1474 9.1847 25 8 1.4021 2.5094 9.6673 26 6 1.5910 0.6059 7.2581 27 6 1.9584 -0.1118 6.1387 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 1.7035 0.3530 -6.8015 35 1 1.6053 -1.7197 1.2952 36 1 3.1263 -0.7995 1.2056 37 1 1.1487 0.8594 2.3518 38 1 0.6127 1.9051 3.7637 39 1 -0.0397 3.1638 5.7736 40 1 -0.4346 4.6488 7.4087 41 1 0.0196 5.0576 9.0807 42 1 1.2809 4.8361 7.8448 43 1 -1.1803 1.0866 9.4296 44 1 -1.5209 2.7108 10.0726 45 1 -1.9749 2.3023 8.4005 46 1 1.8645 0.2496 8.2403 47 1 2.5186 -1.0293 6.2437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666666435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:25 Heat of formation + Delta-G solvation = -62.403074 kcal Electronic energy + Delta-G solvation = -25592.885346 eV Core-core repulsion = 21854.690319 eV Total energy + Delta-G solvation = -3738.195027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -40.56774 -38.71449 -37.06446 -34.69854 -33.50051 -32.80864 -31.72265 -31.49689 -30.47315 -29.43782 -28.25220 -26.88707 -25.85539 -23.97880 -23.16772 -22.02339 -20.86926 -20.23676 -18.64519 -17.63274 -17.16184 -16.55165 -15.77166 -15.48448 -15.34746 -15.23963 -14.69326 -14.56860 -14.39473 -14.22839 -14.08315 -13.99167 -13.85526 -13.63110 -13.53340 -13.31966 -13.24026 -12.76653 -12.63113 -12.56607 -12.45019 -12.29964 -12.06654 -11.75468 -11.53396 -11.13725 -10.84835 -10.73188 -10.71848 -10.32645 -10.20906 -10.17119 -10.10476 -9.80172 -9.63796 -9.61258 -9.26160 -8.96312 -7.29654 -5.81929 -3.18028 0.02970 0.74430 0.99894 2.34658 2.83815 3.28075 3.29418 3.32177 3.38871 3.95784 4.07063 4.14765 4.26701 4.29310 4.35118 4.41099 4.52710 4.66777 4.72628 4.76208 4.85902 4.93321 4.97608 5.09332 5.13903 5.31774 5.34880 5.40992 5.48067 5.48266 5.55286 5.60872 5.63792 5.70491 5.77163 5.81621 5.95453 6.11460 6.20879 6.27402 6.35051 6.57416 6.65933 7.01575 7.18787 7.88232 7.93945 8.36708 9.15198 9.87168 10.06594 11.36432 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.001850 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.909632 B =15128.751655 C =16082.754984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.718 5.718 16 C 0.550 3.450 17 O -0.529 6.529 18 C -0.094 4.094 19 C -0.105 4.105 20 C -0.082 4.082 21 C -0.711 4.711 22 P 2.557 2.443 23 C -0.811 4.811 24 C -0.808 4.808 25 O -1.001 7.001 26 C -0.046 4.046 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.360 0.640 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.152 0.848 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 7.988 33.095 34.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.109 0.891 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.002 3.998 15 N -0.370 5.370 16 C 0.336 3.664 17 O -0.407 6.407 18 C -0.097 4.097 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.700 4.700 22 P 2.627 2.373 23 C -0.856 4.856 24 C -0.853 4.853 25 O -1.104 7.104 26 C -0.064 4.064 27 C -0.096 4.096 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.169 0.831 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.209 7.211 32.270 33.843 hybrid contribution -1.796 1.827 -1.167 2.815 sum -9.005 9.038 31.104 33.619 Atomic orbital electron populations 1.21828 0.94766 1.02384 1.01183 1.21620 0.96624 1.00590 0.94603 0.90553 1.20549 0.97303 0.94242 0.84191 1.42674 1.67721 1.27252 1.02349 1.19064 1.29395 1.07330 0.81703 0.89131 1.24680 1.00745 0.98646 0.95106 1.69695 1.51159 1.40295 0.96913 0.86547 0.80265 0.84822 0.76811 1.21095 1.21685 1.20481 1.21475 1.00621 0.95342 0.82334 1.46006 1.57292 1.27812 1.05919 1.18261 0.79874 0.85063 0.83232 1.90804 1.39473 1.23802 1.86596 1.20290 0.99368 0.95656 0.94374 1.21426 0.97311 0.94247 0.99418 1.20925 0.98100 0.98962 0.92027 1.33268 1.09592 1.09815 1.17313 0.89794 0.50942 0.47058 0.49541 1.31852 1.09467 1.33932 1.10307 1.31834 1.29254 1.12897 1.11363 1.95069 1.65591 1.87830 1.61925 1.21051 0.93245 0.92162 0.99909 1.21548 0.97078 1.00042 0.90902 0.91634 0.92245 0.93882 0.95069 0.95105 0.80670 0.93013 0.90795 0.90737 0.76535 0.85124 0.85237 0.89137 0.87154 0.86896 0.87016 0.87267 0.89122 0.83070 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.94 37.15 0.33 -1.53 16 2 C -0.12 -1.57 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 4 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 5 N -0.75 -17.35 5.13 -59.91 -0.31 -17.66 16 6 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 7 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 10 Si 0.89 21.66 27.73 -169.99 -4.71 16.95 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 14 C 0.13 1.57 5.06 -4.04 -0.02 1.55 16 15 N -0.72 -7.70 5.23 -61.25 -0.32 -8.02 16 16 C 0.55 6.74 7.77 -12.33 -0.10 6.64 16 17 O -0.53 -8.36 16.35 5.32 0.09 -8.27 16 18 C -0.09 -0.92 5.87 -104.97 -0.62 -1.54 16 19 C -0.11 -0.77 9.54 -39.19 -0.37 -1.15 16 20 C -0.08 -0.46 9.56 -39.64 -0.38 -0.83 16 21 C -0.71 -3.99 6.19 -39.50 -0.24 -4.23 16 22 P 2.56 9.34 5.23 -42.89 -0.22 9.12 16 23 C -0.81 -2.59 10.54 101.05 1.06 -1.53 16 24 C -0.81 -2.68 11.06 101.05 1.12 -1.56 16 25 O -1.00 -8.01 18.40 21.61 0.40 -7.62 16 26 C -0.05 -0.33 9.67 -39.64 -0.38 -0.71 16 27 C -0.08 -0.71 9.60 -39.19 -0.38 -1.08 16 28 H 0.06 0.98 7.18 -51.93 -0.37 0.60 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.43 7.18 -51.93 -0.37 0.06 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 7.99 4.72 -40.82 -0.19 7.80 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 3.27 5.69 -40.82 -0.23 3.04 16 38 H 0.13 0.68 6.41 -52.49 -0.34 0.35 16 39 H 0.13 0.26 7.26 -52.48 -0.38 -0.12 16 40 H 0.09 0.14 7.64 -51.93 -0.40 -0.26 16 41 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.15 0.76 8.03 -52.49 -0.42 0.34 16 47 H 0.15 1.31 7.65 -52.48 -0.40 0.91 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -38.50 398.35 -6.13 -44.63 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.35 Total: 5.00 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.47 Total: -11.77 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.15 Total: -54.04 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.48 Total: -15.89 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 15 Polarization: 9.34 SS G_CDS: -0.22 Total: 9.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.50 -6.13 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666666435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.773 kcal (2) G-P(sol) polarization free energy of solvation -38.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds