Wall clock time and date at job start Tue Mar 31 2020 20:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46889 * 2 1 4 4 N 1.46500 * 109.47257 * 119.99993 * 2 1 3 5 5 C 1.36937 * 119.99811 * 275.00233 * 4 2 1 6 6 H 1.08003 * 120.00246 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99904 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99894 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99994 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46942 * 90.00136 * 9 7 5 11 11 H 1.48494 * 109.47385 * 210.00418 * 9 7 5 12 12 H 1.48498 * 109.47208 * 330.00625 * 9 7 5 13 13 C 1.52991 * 109.47174 * 240.00241 * 2 1 3 14 14 H 1.08997 * 109.52587 * 185.08299 * 13 2 1 15 15 C 1.53040 * 109.49969 * 64.99427 * 13 2 1 16 16 C 1.53041 * 109.53964 * 178.68543 * 15 13 2 17 17 C 1.53191 * 109.31227 * 61.36748 * 16 15 13 18 18 N 1.46926 * 108.77675 * 305.36483 * 17 16 15 19 19 C 1.34770 * 120.62996 * 233.59084 * 18 17 16 20 20 O 1.21571 * 120.00135 * 174.18730 * 19 18 17 21 21 C 1.47725 * 120.00423 * 354.18163 * 19 18 17 22 22 C 1.39648 * 120.10905 * 318.57720 * 21 19 18 23 23 C 1.37858 * 119.92390 * 179.71557 * 22 21 19 24 24 C 1.38598 * 120.14879 * 0.55383 * 23 22 21 25 25 F 1.35102 * 119.89143 * 179.69712 * 24 23 22 26 26 C 1.38843 * 120.21879 * 359.71746 * 24 23 22 27 27 F 1.35101 * 119.95944 * 180.02562 * 26 24 23 28 28 C 1.38054 * 120.07329 * 0.02562 * 26 24 23 29 29 C 1.46928 * 118.73651 * 53.60685 * 18 17 16 30 30 H 1.09010 * 109.47151 * 299.99781 * 1 2 3 31 31 H 1.09000 * 109.47341 * 59.99786 * 1 2 3 32 32 H 1.09004 * 109.47473 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99746 * 94.99692 * 4 2 1 34 34 H 0.97010 * 119.99294 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46427 * 298.70550 * 15 13 2 36 36 H 1.08999 * 109.45714 * 58.66883 * 15 13 2 37 37 H 1.08999 * 109.49899 * 181.32080 * 16 15 13 38 38 H 1.09003 * 109.49696 * 301.41759 * 16 15 13 39 39 H 1.09001 * 109.58573 * 185.57915 * 17 16 15 40 40 H 1.08998 * 109.70251 * 65.22340 * 17 16 15 41 41 H 1.07996 * 120.03744 * 359.97438 * 22 21 19 42 42 H 1.08002 * 119.92076 * 180.29147 * 23 22 21 43 43 H 1.07994 * 120.07328 * 180.02562 * 28 26 24 44 44 H 1.09005 * 109.58339 * 186.60685 * 29 18 17 45 45 H 1.08996 * 109.58130 * 66.17908 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0406 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.7385 -0.0049 4.6426 9 14 3.0567 -2.4741 3.4251 10 1 4.4893 -2.6162 3.0607 11 1 2.8177 -3.1042 4.7484 12 1 2.2165 -3.1429 2.3995 13 6 2.0400 -0.7212 -1.2492 14 1 3.1261 -0.8012 -1.2057 15 6 1.6353 0.0687 -2.4960 16 6 2.1732 -0.6346 -3.7443 17 6 1.5611 -2.0356 -3.8399 18 7 1.8218 -2.7523 -2.5840 19 6 2.4123 -3.9637 -2.5946 20 8 2.7186 -4.4998 -1.5474 21 6 2.6872 -4.6403 -3.8787 22 6 1.7388 -4.6106 -4.9033 23 6 2.0017 -5.2384 -6.1022 24 6 3.2004 -5.9086 -6.2888 25 9 3.4501 -6.5272 -7.4636 26 6 4.1453 -5.9467 -5.2722 27 9 5.3123 -6.6011 -5.4600 28 6 3.8937 -5.3168 -4.0698 29 6 1.4264 -2.1232 -1.3165 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.0619 -0.4623 5.4347 35 1 0.5483 0.1270 -2.5521 36 1 2.0504 1.0749 -2.4389 37 1 1.9047 -0.0591 -4.6302 38 1 3.2581 -0.7153 -3.6774 39 1 2.0147 -2.5767 -4.6703 40 1 0.4857 -1.9567 -3.9991 41 1 0.8021 -4.0930 -4.7581 42 1 1.2701 -5.2114 -6.8962 43 1 4.6288 -5.3461 -3.2793 44 1 1.7911 -2.7221 -0.4819 45 1 0.3400 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667327574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:10 Heat of formation + Delta-G solvation = -79.918500 kcal Electronic energy + Delta-G solvation = -29649.063035 eV Core-core repulsion = 25303.026118 eV Total energy + Delta-G solvation = -4346.036916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93391 -49.00062 -40.92845 -39.00160 -37.81525 -35.73114 -33.18987 -32.03130 -31.61951 -31.27095 -30.08486 -28.17337 -26.10253 -24.70834 -23.75406 -23.65079 -22.98129 -21.24612 -20.21948 -18.98418 -18.30905 -18.21960 -17.61317 -17.50145 -16.81216 -16.36175 -16.16671 -15.40763 -15.30188 -15.09142 -14.82733 -14.80539 -14.57274 -14.44649 -14.10195 -13.85469 -13.42082 -13.30415 -13.11300 -13.02061 -12.71195 -12.62778 -12.53250 -12.19465 -11.89676 -11.70042 -11.35534 -11.19668 -10.92641 -10.76297 -10.57591 -10.44044 -10.22962 -10.07858 -9.90612 -9.67428 -9.53718 -9.21715 -8.91996 -8.69282 -7.25609 -5.74649 -3.10219 0.08921 0.42742 2.27412 2.63561 3.01251 3.23328 3.44158 3.49675 3.52858 3.81178 3.96133 4.03229 4.32192 4.50343 4.56611 4.63521 4.75162 4.78067 4.99649 5.05402 5.12993 5.21287 5.25875 5.29331 5.31780 5.42316 5.50887 5.55763 5.57329 5.67064 5.69828 5.74527 5.94020 5.94378 6.10337 6.12221 6.19222 6.20138 6.36133 6.43707 6.55950 6.76005 7.00622 7.18455 7.91720 8.01174 8.44387 9.23058 9.96120 10.14969 11.43522 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.003013 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.471174 B = 9291.461484 C =10566.429237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.186 3.814 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.108 4.108 14 H 0.076 0.924 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.096 3.904 18 N -0.601 5.601 19 C 0.555 3.445 20 O -0.521 6.521 21 C -0.103 4.103 22 C -0.071 4.071 23 C -0.130 4.130 24 C 0.086 3.914 25 F -0.125 7.125 26 C 0.066 3.934 27 F -0.124 7.124 28 C -0.075 4.075 29 C 0.113 3.887 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.095 0.905 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -7.265 -27.688 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.393 5.393 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.201 1.201 13 C -0.128 4.128 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.027 4.027 18 N -0.334 5.334 19 C 0.342 3.658 20 O -0.397 6.397 21 C -0.107 4.107 22 C -0.090 4.090 23 C -0.149 4.149 24 C 0.065 3.935 25 F -0.103 7.103 26 C 0.046 3.954 27 F -0.102 7.102 28 C -0.094 4.094 29 C -0.008 4.008 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.195 0.805 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.113 0.887 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.549 -7.419 -26.964 28.190 hybrid contribution 0.624 -1.550 -0.175 1.680 sum -2.925 -8.969 -27.139 28.732 Atomic orbital electron populations 1.22555 0.99028 1.00868 1.00579 1.20144 0.91997 0.95615 0.84670 0.92310 1.42866 1.79795 1.09464 1.07182 1.19048 1.36975 0.95478 0.85732 0.89204 1.24651 1.01351 0.97419 0.95575 1.69706 1.52667 1.35580 1.00287 0.86623 0.78759 0.86736 0.76868 1.21072 1.21753 1.20073 1.21844 1.01163 0.94072 0.95759 0.90550 1.21604 1.01249 0.99126 0.93217 1.21931 1.01217 0.95087 0.99055 1.22111 1.00873 0.93575 0.86102 1.48081 1.59431 1.17312 1.08542 1.18096 0.78052 0.81416 0.88227 1.90879 1.51018 1.65033 1.32804 1.19863 0.95142 1.00505 0.95149 1.21368 0.99517 0.97127 0.90994 1.21031 0.95729 0.98660 0.99501 1.17908 0.95269 0.98273 0.82020 1.91558 1.94358 1.80208 1.44171 1.17488 0.83583 0.99591 0.94786 1.91568 1.44598 1.78583 1.95456 1.21141 0.97834 0.94728 0.95703 1.21959 0.99800 0.94045 0.85039 0.92330 0.93938 0.93380 0.80521 0.93096 0.91264 0.91235 0.90618 0.91420 0.89410 0.90836 0.83208 0.82833 0.82587 0.88672 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.76 37.16 0.33 -2.39 16 2 C 0.19 3.31 2.67 -67.94 -0.18 3.13 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 N -0.75 -17.41 4.86 -53.43 -0.26 -17.67 16 5 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 9 Si 0.88 22.97 27.74 -169.99 -4.71 18.25 16 10 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.27 -6.90 6.52 56.52 0.37 -6.53 16 13 C -0.11 -1.55 2.27 -90.50 -0.21 -1.75 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.11 -1.17 4.89 -26.69 -0.13 -1.30 16 16 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 17 C 0.10 0.73 4.92 -3.71 -0.02 0.71 16 18 N -0.60 -7.00 2.97 -173.92 -0.52 -7.52 16 19 C 0.56 7.38 7.30 -12.39 -0.09 7.29 16 20 O -0.52 -9.39 16.36 5.30 0.09 -9.30 16 21 C -0.10 -1.02 5.08 -104.97 -0.53 -1.55 16 22 C -0.07 -0.47 7.39 -39.19 -0.29 -0.76 16 23 C -0.13 -0.78 10.01 -39.59 -0.40 -1.17 16 24 C 0.09 0.72 7.31 -39.22 -0.29 0.43 16 25 F -0.12 -1.15 17.17 2.25 0.04 -1.11 16 26 C 0.07 0.64 7.30 -39.42 -0.29 0.35 16 27 F -0.12 -1.34 17.18 2.25 0.04 -1.30 16 28 C -0.07 -0.75 9.62 -39.13 -0.38 -1.12 16 29 C 0.11 1.61 5.19 -3.71 -0.02 1.59 16 30 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.04 0.54 6.60 -51.93 -0.34 0.19 16 32 H 0.05 0.75 6.23 -51.93 -0.32 0.43 16 33 H 0.36 8.53 4.34 -40.82 -0.18 8.35 16 34 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 35 H 0.07 0.65 6.63 -51.93 -0.34 0.31 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.52 4.81 -51.93 -0.25 0.27 16 40 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 41 H 0.15 0.68 6.70 -52.49 -0.35 0.32 16 42 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.09 1.72 5.82 -51.93 -0.30 1.41 16 45 H 0.08 1.03 6.06 -51.93 -0.31 0.72 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -34.08 362.26 -7.79 -41.87 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.80 Total: 4.80 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.90 Total: -4.66 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.00 Total: -54.01 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.41 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.08 -7.79 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667327574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.046 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds