Wall clock time and date at job start Tue Mar 31 2020 20:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46889 * 2 1 4 4 N 1.46500 * 109.47257 * 119.99993 * 2 1 3 5 5 C 1.36937 * 119.99811 * 275.00233 * 4 2 1 6 6 H 1.08003 * 120.00246 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99904 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99894 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99994 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46942 * 90.00136 * 9 7 5 11 11 H 1.48494 * 109.47385 * 210.00418 * 9 7 5 12 12 H 1.48498 * 109.47208 * 330.00625 * 9 7 5 13 13 C 1.52991 * 109.47174 * 240.00241 * 2 1 3 14 14 H 1.08997 * 109.52587 * 185.08299 * 13 2 1 15 15 C 1.53040 * 109.49969 * 64.99427 * 13 2 1 16 16 C 1.53041 * 109.53964 * 178.68543 * 15 13 2 17 17 C 1.53191 * 109.31227 * 61.36748 * 16 15 13 18 18 N 1.46926 * 108.77675 * 305.36483 * 17 16 15 19 19 C 1.34770 * 120.62996 * 233.59084 * 18 17 16 20 20 O 1.21571 * 120.00135 * 174.18730 * 19 18 17 21 21 C 1.47725 * 120.00423 * 354.18163 * 19 18 17 22 22 C 1.39648 * 120.10905 * 318.57720 * 21 19 18 23 23 C 1.37858 * 119.92390 * 179.71557 * 22 21 19 24 24 C 1.38598 * 120.14879 * 0.55383 * 23 22 21 25 25 F 1.35102 * 119.89143 * 179.69712 * 24 23 22 26 26 C 1.38843 * 120.21879 * 359.71746 * 24 23 22 27 27 F 1.35101 * 119.95944 * 180.02562 * 26 24 23 28 28 C 1.38054 * 120.07329 * 0.02562 * 26 24 23 29 29 C 1.46928 * 118.73651 * 53.60685 * 18 17 16 30 30 H 1.09010 * 109.47151 * 299.99781 * 1 2 3 31 31 H 1.09000 * 109.47341 * 59.99786 * 1 2 3 32 32 H 1.09004 * 109.47473 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99746 * 94.99692 * 4 2 1 34 34 H 0.97010 * 119.99294 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46427 * 298.70550 * 15 13 2 36 36 H 1.08999 * 109.45714 * 58.66883 * 15 13 2 37 37 H 1.08999 * 109.49899 * 181.32080 * 16 15 13 38 38 H 1.09003 * 109.49696 * 301.41759 * 16 15 13 39 39 H 1.09001 * 109.58573 * 185.57915 * 17 16 15 40 40 H 1.08998 * 109.70251 * 65.22340 * 17 16 15 41 41 H 1.07996 * 120.03744 * 359.97438 * 22 21 19 42 42 H 1.08002 * 119.92076 * 180.29147 * 23 22 21 43 43 H 1.07994 * 120.07328 * 180.02562 * 28 26 24 44 44 H 1.09005 * 109.58339 * 186.60685 * 29 18 17 45 45 H 1.08996 * 109.58130 * 66.17908 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0406 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.7385 -0.0049 4.6426 9 14 3.0567 -2.4741 3.4251 10 1 4.4893 -2.6162 3.0607 11 1 2.8177 -3.1042 4.7484 12 1 2.2165 -3.1429 2.3995 13 6 2.0400 -0.7212 -1.2492 14 1 3.1261 -0.8012 -1.2057 15 6 1.6353 0.0687 -2.4960 16 6 2.1732 -0.6346 -3.7443 17 6 1.5611 -2.0356 -3.8399 18 7 1.8218 -2.7523 -2.5840 19 6 2.4123 -3.9637 -2.5946 20 8 2.7186 -4.4998 -1.5474 21 6 2.6872 -4.6403 -3.8787 22 6 1.7388 -4.6106 -4.9033 23 6 2.0017 -5.2384 -6.1022 24 6 3.2004 -5.9086 -6.2888 25 9 3.4501 -6.5272 -7.4636 26 6 4.1453 -5.9467 -5.2722 27 9 5.3123 -6.6011 -5.4600 28 6 3.8937 -5.3168 -4.0698 29 6 1.4264 -2.1232 -1.3165 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.0619 -0.4623 5.4347 35 1 0.5483 0.1270 -2.5521 36 1 2.0504 1.0749 -2.4389 37 1 1.9047 -0.0591 -4.6302 38 1 3.2581 -0.7153 -3.6774 39 1 2.0147 -2.5767 -4.6703 40 1 0.4857 -1.9567 -3.9991 41 1 0.8021 -4.0930 -4.7581 42 1 1.2701 -5.2114 -6.8962 43 1 4.6288 -5.3461 -3.2793 44 1 1.7911 -2.7221 -0.4819 45 1 0.3400 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667327574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:09 Heat of formation + Delta-G solvation = -101.759083 kcal Electronic energy + Delta-G solvation = -29650.010113 eV Core-core repulsion = 25303.026118 eV Total energy + Delta-G solvation = -4346.983995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.64480 -49.72258 -41.82514 -39.87952 -38.86238 -37.10580 -34.75861 -33.38810 -32.32427 -32.18005 -31.50060 -29.47781 -26.98682 -26.17493 -24.71694 -24.47541 -24.11984 -22.31545 -21.31669 -20.22593 -19.61677 -18.98870 -18.85506 -18.32255 -17.55195 -17.29165 -17.05746 -16.67160 -16.23988 -16.17402 -16.12744 -15.73158 -15.60472 -15.27451 -15.16763 -14.98630 -14.57159 -14.43880 -14.29315 -14.06314 -13.96068 -13.68710 -13.58269 -13.33621 -13.02031 -12.96328 -12.66273 -12.55089 -12.31052 -12.02360 -11.89342 -11.85380 -11.75371 -11.43351 -11.27241 -11.06003 -10.99412 -10.30212 -9.92540 -9.64749 -9.32196 -8.05605 -5.35876 -0.59457 -0.18750 1.31876 1.35129 1.40078 1.40545 1.76779 2.26510 2.42827 2.59073 3.14130 3.21784 3.27000 3.43729 3.53745 3.74284 3.84607 3.85738 3.91210 4.00052 4.13286 4.28133 4.38184 4.48271 4.55749 4.58748 4.62049 4.70539 4.72672 4.77736 4.81594 4.86162 4.90306 4.95779 5.07974 5.11443 5.18003 5.25069 5.38054 5.43722 5.49725 5.52530 5.69155 5.77607 6.20490 6.27828 6.95647 7.06619 7.85609 8.00865 9.16330 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.003013 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.471174 B = 9291.461484 C =10566.429237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 H 0.048 0.952 4 N -0.757 5.757 5 C -0.218 4.218 6 H 0.065 0.935 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.940 3.060 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.264 1.264 13 C -0.097 4.097 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.130 4.130 17 C 0.088 3.912 18 N -0.595 5.595 19 C 0.550 3.450 20 O -0.584 6.584 21 C -0.113 4.113 22 C -0.051 4.051 23 C -0.106 4.106 24 C 0.085 3.915 25 F -0.129 7.129 26 C 0.049 3.951 27 F -0.138 7.138 28 C -0.086 4.086 29 C 0.117 3.883 30 H 0.029 0.971 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.360 0.640 34 H 0.257 0.743 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.184 0.816 42 H 0.196 0.804 43 H 0.138 0.862 44 H 0.050 0.950 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 -7.377 -32.397 33.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 H 0.066 0.934 4 N -0.400 5.400 5 C -0.349 4.349 6 H 0.083 0.917 7 C -0.250 4.250 8 N -0.633 5.633 9 Si 0.769 3.231 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.189 1.189 13 C -0.117 4.117 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.168 4.168 17 C -0.033 4.033 18 N -0.326 5.326 19 C 0.339 3.661 20 O -0.465 6.465 21 C -0.117 4.117 22 C -0.069 4.069 23 C -0.124 4.124 24 C 0.064 3.936 25 F -0.108 7.108 26 C 0.029 3.971 27 F -0.116 7.116 28 C -0.106 4.106 29 C -0.006 4.006 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.193 0.807 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.202 0.798 42 H 0.213 0.787 43 H 0.156 0.844 44 H 0.068 0.932 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.161 -7.504 -31.775 33.225 hybrid contribution 1.403 -1.403 1.182 2.310 sum -4.758 -8.907 -30.593 32.216 Atomic orbital electron populations 1.22394 0.96686 1.01437 1.01356 1.20473 0.93557 0.95001 0.84229 0.93408 1.43006 1.80090 1.09451 1.07498 1.19074 1.34064 0.94518 0.87234 0.91740 1.25298 1.02942 1.01241 0.95562 1.69847 1.55205 1.37214 1.01071 0.85639 0.78273 0.82373 0.76789 1.21412 1.21899 1.18881 1.21674 0.99328 0.94643 0.96102 0.93336 1.21607 1.02667 0.98578 0.91828 1.21939 1.00199 0.95579 0.99124 1.22557 1.03369 0.92903 0.84421 1.48154 1.58377 1.16870 1.09165 1.18643 0.77123 0.81669 0.88671 1.90845 1.53644 1.66726 1.35245 1.19630 0.96079 1.01348 0.94609 1.21679 0.99412 0.96138 0.89713 1.21424 0.94904 0.96122 0.99961 1.18140 0.95750 0.98342 0.81323 1.91552 1.94491 1.80395 1.44313 1.17606 0.83805 1.00356 0.95333 1.91526 1.45561 1.79000 1.95541 1.21006 0.98200 0.95731 0.95684 1.21727 1.00475 0.93100 0.85272 0.95178 0.89507 0.92862 0.80723 0.93439 0.89061 0.91142 0.86882 0.93094 0.87231 0.87166 0.79846 0.78696 0.84406 0.93164 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 8.76 71.98 0.63 -4.14 16 2 C 0.18 6.18 2.67 44.99 0.12 6.30 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 N -0.76 -35.89 4.86 -322.95 -1.57 -37.46 16 5 C -0.22 -12.57 10.41 84.03 0.87 -11.69 16 6 H 0.06 4.00 8.06 -2.91 -0.02 3.98 16 7 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 8 N -0.98 -64.48 13.97 21.65 0.30 -64.18 16 9 Si 0.94 49.32 27.74 68.60 1.90 51.22 16 10 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 11 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 12 H -0.26 -13.16 6.52 99.48 0.65 -12.51 16 13 C -0.10 -2.67 2.27 -10.72 -0.02 -2.69 16 14 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.11 -1.82 4.89 30.62 0.15 -1.67 16 16 C -0.13 -1.48 6.08 30.67 0.19 -1.29 16 17 C 0.09 0.87 4.92 86.36 0.43 1.29 16 18 N -0.59 -12.47 2.97 -822.45 -2.44 -14.92 16 19 C 0.55 14.28 7.30 86.75 0.63 14.91 16 20 O -0.58 -21.98 16.36 -3.94 -0.06 -22.04 16 21 C -0.11 -2.03 5.08 -20.09 -0.10 -2.13 16 22 C -0.05 -0.43 7.39 22.52 0.17 -0.26 16 23 C -0.11 -0.71 10.01 22.27 0.22 -0.49 16 24 C 0.08 1.18 7.31 22.50 0.16 1.34 16 25 F -0.13 -2.04 17.17 44.97 0.77 -1.27 16 26 C 0.05 0.92 7.30 22.37 0.16 1.08 16 27 F -0.14 -3.06 17.18 44.97 0.77 -2.28 16 28 C -0.09 -1.75 9.62 22.56 0.22 -1.53 16 29 C 0.12 3.18 5.19 86.36 0.45 3.63 16 30 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.83 6.60 -2.39 -0.02 1.82 16 32 H 0.05 1.54 6.23 -2.38 -0.01 1.52 16 33 H 0.36 17.36 4.34 -92.71 -0.40 16.96 16 34 H 0.26 16.15 8.31 -92.70 -0.77 15.37 16 35 H 0.09 1.17 6.63 -2.39 -0.02 1.15 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.66 4.81 -2.39 -0.01 0.64 16 40 H 0.11 0.42 8.13 -2.39 -0.02 0.40 16 41 H 0.18 0.36 6.70 -2.91 -0.02 0.35 16 42 H 0.20 -0.19 8.06 -2.91 -0.02 -0.21 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.05 1.85 5.82 -2.38 -0.01 1.84 16 45 H 0.10 2.26 6.06 -2.39 -0.01 2.25 16 Total: -1.00 -81.77 362.26 4.99 -76.78 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.58 Total: 14.62 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.74 Total: -0.48 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -3.71 Total: -116.56 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.54 Total: -3.55 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.90 Total: 51.22 kcal Total: -81.77 4.99 -76.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667327574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.982 kcal (2) G-P(sol) polarization free energy of solvation -81.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds