Wall clock time and date at job start Tue Mar 31 2020 20:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47642 * 2 1 4 4 C 1.52997 * 109.46919 * 120.00166 * 2 1 3 5 5 C 1.50701 * 109.47490 * 294.99736 * 4 2 1 6 6 O 1.21285 * 119.99357 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00373 * 179.97438 * 5 4 2 8 8 C 1.46922 * 120.62812 * 359.97438 * 7 5 4 9 9 C 1.53189 * 108.77647 * 126.41273 * 8 7 5 10 10 C 1.53109 * 109.32997 * 54.63033 * 9 8 7 11 11 C 1.53041 * 109.50376 * 298.65619 * 10 9 8 12 12 C 1.53003 * 109.49836 * 181.31660 * 11 10 9 13 13 O 1.42906 * 109.46869 * 65.06573 * 12 11 10 14 14 N 1.46496 * 109.49771 * 301.38306 * 11 10 9 15 15 C 1.36939 * 120.00077 * 299.93275 * 14 11 10 16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 11 17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 11 18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 119.99875 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99434 * 19 17 15 23 23 C 1.46924 * 120.62923 * 179.97438 * 7 5 4 24 24 C 1.53002 * 109.47212 * 239.99693 * 2 1 3 25 25 F 1.39901 * 109.47133 * 300.00543 * 24 2 1 26 26 F 1.39903 * 109.46920 * 60.00177 * 24 2 1 27 27 F 1.39897 * 109.47102 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46691 * 299.99987 * 1 2 3 30 30 H 1.09000 * 109.46559 * 59.99586 * 1 2 3 31 31 H 1.09004 * 109.47641 * 174.99619 * 4 2 1 32 32 H 1.09002 * 109.47656 * 54.99696 * 4 2 1 33 33 H 1.09003 * 109.58561 * 246.19452 * 8 7 5 34 34 H 1.08996 * 109.59020 * 6.47614 * 8 7 5 35 35 H 1.08999 * 109.50196 * 174.58428 * 9 8 7 36 36 H 1.09000 * 109.49556 * 294.68367 * 9 8 7 37 37 H 1.09005 * 109.50513 * 178.63431 * 10 9 8 38 38 H 1.08996 * 109.45440 * 58.65619 * 10 9 8 39 39 H 1.08993 * 109.47112 * 185.06888 * 12 11 10 40 40 H 1.08999 * 109.47225 * 305.07146 * 12 11 10 41 41 H 0.96702 * 113.99405 * 180.02562 * 13 12 11 42 42 H 0.97004 * 120.00009 * 119.93892 * 14 11 10 43 43 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58357 * 113.79854 * 23 7 5 45 45 H 1.09002 * 109.58890 * 353.37885 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3633 7 7 1.9845 -0.3920 3.7002 8 6 2.7465 -1.6388 3.8535 9 6 3.9904 -1.3553 4.7015 10 6 3.5661 -0.7112 6.0241 11 6 2.8600 0.6170 5.7422 12 6 2.4652 1.2764 7.0652 13 8 3.6439 1.6241 7.7945 14 7 3.7627 1.5038 5.0041 15 6 4.9586 1.8775 5.5569 16 1 5.2342 1.5220 6.5387 17 6 5.8138 2.7182 4.8577 18 7 5.4777 3.1517 3.6613 19 14 7.4416 3.2341 5.6149 20 1 7.5811 2.6155 6.9576 21 1 8.5572 2.7846 4.7440 22 1 7.4803 4.7129 5.7452 23 6 1.6035 0.3560 4.9060 24 6 2.0401 -0.7213 -1.2492 25 9 1.5737 -2.0403 -1.2492 26 9 1.5738 -0.0618 -2.3915 27 9 3.4391 -0.7218 -1.2489 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 3.1264 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 2.1281 -2.3862 4.3506 34 1 3.0465 -2.0067 2.8724 35 1 4.5138 -2.2898 4.9036 36 1 4.6514 -0.6769 4.1622 37 1 4.4471 -0.5304 6.6400 38 1 2.8856 -1.3795 6.5515 39 1 1.8840 2.1761 6.8635 40 1 1.8661 0.5810 7.6532 41 1 3.4689 2.0472 8.6462 42 1 3.5134 1.8263 4.1239 43 1 6.0755 3.7388 3.1726 44 1 0.8917 -0.2285 5.4889 45 1 1.1516 1.3056 4.6195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673689529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:08 Heat of formation + Delta-G solvation = -226.113050 kcal Electronic energy + Delta-G solvation = -32034.362760 eV Core-core repulsion = 27251.217148 eV Total energy + Delta-G solvation = -4783.145613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.14286 -47.62547 -47.59654 -40.21703 -38.14233 -35.87369 -34.96907 -33.85575 -32.07038 -31.34516 -29.06175 -28.05715 -26.35508 -25.43359 -24.76439 -23.47927 -21.83197 -21.50508 -19.37511 -18.59132 -18.41046 -18.11556 -17.71741 -17.34719 -16.32646 -16.27999 -15.76547 -15.38857 -14.90927 -14.56713 -14.52649 -14.15606 -14.04398 -13.94945 -13.84915 -13.77055 -13.74048 -13.53803 -13.39233 -13.14277 -13.03013 -12.90724 -12.41374 -12.12988 -11.95986 -11.86544 -11.51284 -11.36393 -11.30014 -11.15388 -10.80073 -10.72298 -10.41798 -10.36717 -10.10878 -9.87551 -9.53630 -9.49209 -8.98813 -8.75923 -8.29723 -6.85508 -5.59981 -2.87099 2.66239 2.82247 3.18416 3.51235 3.57985 3.60296 3.77030 3.96636 4.03793 4.58731 4.68497 4.77309 4.80817 4.88666 5.06367 5.17684 5.31595 5.36458 5.39900 5.50458 5.51926 5.62114 5.68615 5.73027 5.79170 5.85588 5.86652 5.90411 6.02574 6.08380 6.10833 6.18048 6.32940 6.49867 6.71424 6.80178 6.95397 7.06384 7.63212 8.11158 8.34454 8.39107 8.58081 9.70070 10.20942 10.57436 11.62800 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.003890 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.892498 B = 7196.613709 C = 8275.289910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 H 0.126 0.874 4 C -0.141 4.141 5 C 0.527 3.473 6 O -0.537 6.537 7 N -0.595 5.595 8 C 0.109 3.891 9 C -0.130 4.130 10 C -0.117 4.117 11 C 0.188 3.812 12 C 0.074 3.926 13 O -0.535 6.535 14 N -0.704 5.704 15 C -0.204 4.204 16 H 0.093 0.907 17 C -0.025 4.025 18 N -0.940 5.940 19 Si 0.902 3.098 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.297 1.297 23 C 0.116 3.884 24 C 0.453 3.547 25 F -0.186 7.186 26 F -0.183 7.183 27 F -0.181 7.181 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.023 0.977 41 H 0.351 0.649 42 H 0.383 0.617 43 H 0.249 0.751 44 H 0.065 0.935 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 -12.408 -2.972 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 H 0.144 0.856 4 C -0.181 4.181 5 C 0.314 3.686 6 O -0.415 6.415 7 N -0.327 5.327 8 C -0.014 4.014 9 C -0.168 4.168 10 C -0.157 4.157 11 C 0.095 3.905 12 C -0.007 4.007 13 O -0.337 6.337 14 N -0.344 5.344 15 C -0.335 4.335 16 H 0.110 0.890 17 C -0.219 4.219 18 N -0.590 5.590 19 Si 0.734 3.266 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.225 1.225 23 C -0.007 4.007 24 C 0.399 3.601 25 F -0.167 7.167 26 F -0.165 7.165 27 F -0.163 7.163 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.195 0.805 42 H 0.218 0.782 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.810 -12.116 -3.504 16.611 hybrid contribution 0.867 0.564 0.406 1.111 sum -9.943 -11.552 -3.097 15.553 Atomic orbital electron populations 1.21988 0.91142 1.03006 1.05187 1.22181 1.00055 1.02149 0.89420 0.85577 1.21702 1.04208 1.00213 0.91971 1.20028 0.79286 0.85219 0.84021 1.90673 1.40717 1.24130 1.85950 1.47811 1.54727 1.24622 1.05581 1.21800 0.93477 0.85185 1.00957 1.21827 0.96839 1.00756 0.97359 1.21887 1.01051 0.96254 0.96498 1.19950 0.89888 0.91038 0.89664 1.22714 0.87290 0.97093 0.93640 1.86934 1.30572 1.82112 1.34084 1.42406 1.18425 1.54421 1.19175 1.19596 0.92900 1.21282 0.99745 0.88955 1.24742 0.98916 1.01339 0.96917 1.69693 1.37300 1.39276 1.12714 0.86169 0.84422 0.77866 0.78112 1.20672 1.22509 1.22458 1.21702 0.96275 0.97442 0.85275 1.20677 0.75574 0.77511 0.86333 1.93149 1.88509 1.38208 1.96857 1.93168 1.88502 1.80772 1.54022 1.93205 1.29889 1.96380 1.96782 0.92081 0.88297 0.91571 0.87361 0.88019 0.91886 0.90387 0.92132 0.89192 0.90723 0.94042 0.94594 0.95864 0.80454 0.78227 0.94066 0.91674 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.69 37.16 0.32 -1.40 16 2 C -0.12 -1.44 2.01 -90.62 -0.18 -1.62 16 3 H 0.13 1.73 7.95 -51.93 -0.41 1.32 16 4 C -0.14 -1.72 3.28 -27.88 -0.09 -1.81 16 5 C 0.53 8.18 7.42 -10.98 -0.08 8.10 16 6 O -0.54 -9.92 13.38 5.55 0.07 -9.85 16 7 N -0.60 -8.88 2.87 -172.79 -0.50 -9.38 16 8 C 0.11 1.35 6.34 -3.71 -0.02 1.33 16 9 C -0.13 -1.98 5.93 -26.58 -0.16 -2.13 16 10 C -0.12 -1.94 4.43 -26.65 -0.12 -2.05 16 11 C 0.19 3.42 0.68 -131.72 -0.09 3.33 16 12 C 0.07 1.25 6.09 37.16 0.23 1.48 16 13 O -0.53 -9.91 9.91 -35.23 -0.35 -10.26 16 14 N -0.70 -16.65 4.22 -47.14 -0.20 -16.85 16 15 C -0.20 -5.44 8.14 -15.06 -0.12 -5.56 16 16 H 0.09 2.48 5.29 -52.49 -0.28 2.20 16 17 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 18 N -0.94 -28.59 13.06 55.49 0.72 -27.86 16 19 Si 0.90 22.91 29.55 -169.99 -5.02 17.89 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 23 C 0.12 1.84 5.14 -3.73 -0.02 1.82 16 24 C 0.45 5.45 2.69 37.16 0.10 5.55 16 25 F -0.19 -2.12 16.37 2.25 0.04 -2.08 16 26 F -0.18 -2.29 16.80 2.25 0.04 -2.25 16 27 F -0.18 -2.42 16.71 2.25 0.04 -2.39 16 28 H 0.06 0.58 7.80 -51.93 -0.41 0.18 16 29 H 0.10 1.26 5.95 -51.93 -0.31 0.95 16 30 H 0.07 0.68 7.80 -51.93 -0.41 0.27 16 31 H 0.11 1.35 7.22 -51.93 -0.37 0.97 16 32 H 0.10 0.97 7.74 -51.93 -0.40 0.57 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.83 5.93 -51.93 -0.31 0.52 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.76 7.53 -51.93 -0.39 1.37 16 37 H 0.07 1.44 6.98 -51.93 -0.36 1.07 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 4.81 9.12 45.56 0.42 5.22 16 42 H 0.38 10.19 7.65 -40.82 -0.31 9.87 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.70 7.01 -51.93 -0.36 1.33 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -32.56 361.66 -5.62 -38.17 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.58 Total: 13.19 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.33 Total: 6.22 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.03 Total: -54.09 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.27 Total: -20.11 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.11 Total: -6.72 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.56 -5.62 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673689529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.939 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds