Wall clock time and date at job start Tue Mar 31 2020 20:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47642 * 2 1 4 4 C 1.52997 * 109.46919 * 120.00166 * 2 1 3 5 5 C 1.50701 * 109.47490 * 294.99736 * 4 2 1 6 6 O 1.21285 * 119.99357 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00373 * 179.97438 * 5 4 2 8 8 C 1.46922 * 120.62812 * 359.97438 * 7 5 4 9 9 C 1.53189 * 108.77647 * 126.41273 * 8 7 5 10 10 C 1.53109 * 109.32997 * 54.63033 * 9 8 7 11 11 C 1.53041 * 109.50376 * 298.65619 * 10 9 8 12 12 C 1.53003 * 109.49836 * 181.31660 * 11 10 9 13 13 O 1.42906 * 109.46869 * 65.06573 * 12 11 10 14 14 N 1.46496 * 109.49771 * 301.38306 * 11 10 9 15 15 C 1.36939 * 120.00077 * 299.93275 * 14 11 10 16 16 H 1.07997 * 119.99728 * 359.72656 * 15 14 11 17 17 C 1.38815 * 119.99845 * 180.02562 * 15 14 11 18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 119.99875 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99434 * 19 17 15 23 23 C 1.46924 * 120.62923 * 179.97438 * 7 5 4 24 24 C 1.53002 * 109.47212 * 239.99693 * 2 1 3 25 25 F 1.39901 * 109.47133 * 300.00543 * 24 2 1 26 26 F 1.39903 * 109.46920 * 60.00177 * 24 2 1 27 27 F 1.39897 * 109.47102 * 180.02562 * 24 2 1 28 28 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46691 * 299.99987 * 1 2 3 30 30 H 1.09000 * 109.46559 * 59.99586 * 1 2 3 31 31 H 1.09004 * 109.47641 * 174.99619 * 4 2 1 32 32 H 1.09002 * 109.47656 * 54.99696 * 4 2 1 33 33 H 1.09003 * 109.58561 * 246.19452 * 8 7 5 34 34 H 1.08996 * 109.59020 * 6.47614 * 8 7 5 35 35 H 1.08999 * 109.50196 * 174.58428 * 9 8 7 36 36 H 1.09000 * 109.49556 * 294.68367 * 9 8 7 37 37 H 1.09005 * 109.50513 * 178.63431 * 10 9 8 38 38 H 1.08996 * 109.45440 * 58.65619 * 10 9 8 39 39 H 1.08993 * 109.47112 * 185.06888 * 12 11 10 40 40 H 1.08999 * 109.47225 * 305.07146 * 12 11 10 41 41 H 0.96702 * 113.99405 * 180.02562 * 13 12 11 42 42 H 0.97004 * 120.00009 * 119.93892 * 14 11 10 43 43 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58357 * 113.79854 * 23 7 5 45 45 H 1.09002 * 109.58890 * 353.37885 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3633 7 7 1.9845 -0.3920 3.7002 8 6 2.7465 -1.6388 3.8535 9 6 3.9904 -1.3553 4.7015 10 6 3.5661 -0.7112 6.0241 11 6 2.8600 0.6170 5.7422 12 6 2.4652 1.2764 7.0652 13 8 3.6439 1.6241 7.7945 14 7 3.7627 1.5038 5.0041 15 6 4.9586 1.8775 5.5569 16 1 5.2342 1.5220 6.5387 17 6 5.8138 2.7182 4.8577 18 7 5.4777 3.1517 3.6613 19 14 7.4416 3.2341 5.6149 20 1 7.5811 2.6155 6.9576 21 1 8.5572 2.7846 4.7440 22 1 7.4803 4.7129 5.7452 23 6 1.6035 0.3560 4.9060 24 6 2.0401 -0.7213 -1.2492 25 9 1.5737 -2.0403 -1.2492 26 9 1.5738 -0.0618 -2.3915 27 9 3.4391 -0.7218 -1.2489 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 3.1264 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 2.1281 -2.3862 4.3506 34 1 3.0465 -2.0067 2.8724 35 1 4.5138 -2.2898 4.9036 36 1 4.6514 -0.6769 4.1622 37 1 4.4471 -0.5304 6.6400 38 1 2.8856 -1.3795 6.5515 39 1 1.8840 2.1761 6.8635 40 1 1.8661 0.5810 7.6532 41 1 3.4689 2.0472 8.6462 42 1 3.5134 1.8263 4.1239 43 1 6.0755 3.7388 3.1726 44 1 0.8917 -0.2285 5.4889 45 1 1.1516 1.3056 4.6195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673689529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:07 Heat of formation + Delta-G solvation = -249.475369 kcal Electronic energy + Delta-G solvation = -32035.375827 eV Core-core repulsion = 27251.217148 eV Total energy + Delta-G solvation = -4784.158679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.12809 -48.61962 -48.57516 -41.43489 -39.49026 -37.18393 -36.02197 -35.52141 -33.76285 -32.65492 -30.73904 -29.26639 -27.32014 -26.65993 -26.03894 -25.43404 -23.06310 -22.54228 -20.62275 -19.79188 -19.48072 -19.20927 -19.15168 -18.73895 -17.88345 -17.40266 -16.94388 -16.58104 -16.47325 -15.77730 -15.71813 -15.54335 -15.37252 -15.13230 -15.03054 -14.91079 -14.77337 -14.75184 -14.71749 -14.44949 -14.22909 -14.00679 -13.69364 -13.44976 -13.25912 -13.13801 -12.88089 -12.76248 -12.58384 -12.36715 -12.29370 -12.25977 -11.94398 -11.73563 -11.67321 -11.47631 -11.24723 -10.82990 -10.64608 -10.52192 -9.49430 -8.84175 -7.76366 -5.00329 1.46586 1.48067 1.57601 1.61043 1.68675 2.09993 2.66329 2.78230 2.98051 3.06487 3.44845 3.56013 3.71548 3.72278 3.85830 3.90911 4.03574 4.18746 4.20564 4.30118 4.44196 4.49307 4.51582 4.54493 4.61211 4.67307 4.69409 4.82496 4.84531 4.93797 4.94834 5.03697 5.07423 5.27278 5.34826 5.58967 5.62414 5.72917 5.95670 6.45346 6.49255 7.16254 7.21845 7.53163 8.24895 8.47539 9.47998 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.003890 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.892498 B = 7196.613709 C = 8275.289910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 H 0.102 0.898 4 C -0.134 4.134 5 C 0.518 3.482 6 O -0.575 6.575 7 N -0.598 5.598 8 C 0.109 3.891 9 C -0.127 4.127 10 C -0.110 4.110 11 C 0.174 3.826 12 C 0.074 3.926 13 O -0.565 6.565 14 N -0.714 5.714 15 C -0.169 4.169 16 H 0.095 0.905 17 C -0.098 4.098 18 N -0.982 5.982 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.305 1.305 22 H -0.307 1.307 23 C 0.121 3.879 24 C 0.461 3.539 25 F -0.177 7.177 26 F -0.186 7.186 27 F -0.190 7.190 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.373 0.627 42 H 0.364 0.636 43 H 0.238 0.762 44 H 0.106 0.894 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 -15.566 -1.731 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 H 0.120 0.880 4 C -0.174 4.174 5 C 0.307 3.693 6 O -0.455 6.455 7 N -0.329 5.329 8 C -0.013 4.013 9 C -0.166 4.166 10 C -0.149 4.149 11 C 0.083 3.917 12 C -0.006 4.006 13 O -0.371 6.371 14 N -0.352 5.352 15 C -0.302 4.302 16 H 0.112 0.888 17 C -0.287 4.287 18 N -0.637 5.637 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.233 1.233 22 H -0.236 1.236 23 C -0.003 4.003 24 C 0.406 3.594 25 F -0.158 7.158 26 F -0.167 7.167 27 F -0.172 7.172 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.221 0.779 42 H 0.196 0.804 43 H 0.047 0.953 44 H 0.124 0.876 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.219 -15.335 -2.183 19.729 hybrid contribution 1.209 1.470 0.132 1.907 sum -11.011 -13.866 -2.051 17.824 Atomic orbital electron populations 1.21922 0.90052 1.04125 1.04536 1.22114 1.00926 1.00983 0.89697 0.87965 1.21712 1.04123 1.01338 0.90198 1.20604 0.78726 0.84950 0.85047 1.90662 1.42527 1.25814 1.86545 1.47957 1.54614 1.25245 1.05110 1.22022 0.92448 0.84681 1.02099 1.21765 0.97627 1.00591 0.96578 1.21782 1.00328 0.95791 0.97044 1.20416 0.90162 0.90971 0.90195 1.22650 0.86990 0.97544 0.93425 1.86804 1.31934 1.82601 1.35725 1.42562 1.18530 1.55340 1.18763 1.19843 0.93138 1.18266 0.98943 0.88756 1.25378 1.02130 1.03451 0.97767 1.69855 1.38195 1.41269 1.14336 0.85261 0.81313 0.76734 0.77773 1.19222 1.23305 1.23597 1.21628 0.95526 0.97317 0.85788 1.20534 0.75066 0.77726 0.86028 1.93163 1.88331 1.37516 1.96812 1.93164 1.88476 1.80923 1.54159 1.93192 1.30727 1.96444 1.96805 0.89995 0.90086 0.91065 0.87664 0.84451 0.87834 0.88405 0.89471 0.94410 0.93802 0.90024 0.95827 0.91399 0.77916 0.80413 0.95322 0.87571 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.69 71.98 0.63 -2.50 16 2 C -0.12 -2.79 2.01 -10.79 -0.02 -2.81 16 3 H 0.10 2.94 7.95 -2.39 -0.02 2.92 16 4 C -0.13 -3.06 3.28 29.85 0.10 -2.97 16 5 C 0.52 15.71 7.42 87.66 0.65 16.36 16 6 O -0.58 -21.73 13.38 -3.05 -0.04 -21.78 16 7 N -0.60 -16.62 2.87 -818.97 -2.35 -18.96 16 8 C 0.11 2.30 6.34 86.36 0.55 2.84 16 9 C -0.13 -3.58 5.93 30.69 0.18 -3.39 16 10 C -0.11 -3.33 4.43 30.64 0.14 -3.19 16 11 C 0.17 6.05 0.68 3.67 0.00 6.05 16 12 C 0.07 2.35 6.09 71.98 0.44 2.79 16 13 O -0.57 -20.02 9.91 -148.98 -1.48 -21.50 16 14 N -0.71 -34.30 4.22 -303.04 -1.28 -35.58 16 15 C -0.17 -9.16 8.14 84.03 0.68 -8.48 16 16 H 0.09 5.05 5.29 -2.91 -0.02 5.04 16 17 C -0.10 -5.75 5.50 84.86 0.47 -5.29 16 18 N -0.98 -62.49 13.06 21.65 0.28 -62.20 16 19 Si 0.96 48.58 29.55 68.60 2.03 50.61 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 22 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 23 C 0.12 3.59 5.14 86.35 0.44 4.04 16 24 C 0.46 10.54 2.69 71.98 0.19 10.74 16 25 F -0.18 -3.59 16.37 44.97 0.74 -2.86 16 26 F -0.19 -4.48 16.80 44.97 0.76 -3.72 16 27 F -0.19 -4.98 16.71 44.97 0.75 -4.23 16 28 H 0.08 1.35 7.80 -2.39 -0.02 1.33 16 29 H 0.08 2.05 5.95 -2.39 -0.01 2.04 16 30 H 0.07 1.39 7.80 -2.39 -0.02 1.38 16 31 H 0.11 2.51 7.22 -2.38 -0.02 2.49 16 32 H 0.14 2.12 7.74 -2.39 -0.02 2.10 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.70 5.93 -2.39 -0.01 1.68 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.46 7.53 -2.39 -0.02 1.45 16 37 H 0.04 1.60 6.98 -2.38 -0.02 1.58 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.37 9.50 9.12 -74.06 -0.68 8.82 16 42 H 0.36 20.13 7.65 -92.71 -0.71 19.43 16 43 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.07 2.36 7.01 -2.39 -0.02 2.34 16 Total: -1.00 -75.10 361.66 3.52 -71.58 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.34 Total: 34.46 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 4.45 Total: 14.18 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -3.34 Total: -116.75 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.52 Total: -43.27 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 2.24 Total: -10.81 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -75.10 3.52 -71.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673689529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.894 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds