Wall clock time and date at job start Tue Mar 31 2020 20:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99783 * 2 1 4 4 C 1.50703 * 109.46708 * 179.97438 * 3 2 1 5 5 C 1.35133 * 125.61115 * 90.00613 * 4 3 2 6 6 C 1.40366 * 107.11147 * 179.97438 * 5 4 3 7 7 C 1.36542 * 106.70845 * 359.97438 * 6 5 4 8 8 C 1.46663 * 125.98737 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00351 * 6.84245 * 8 7 6 10 10 N 1.34780 * 119.99734 * 186.83684 * 8 7 6 11 11 C 1.47149 * 120.98619 * 356.33204 * 10 8 7 12 12 C 1.53291 * 108.38648 * 129.43901 * 11 10 8 13 13 O 1.42967 * 109.22027 * 52.30558 * 12 11 10 14 14 C 1.42962 * 114.16668 * 297.41896 * 13 12 11 15 15 H 1.08998 * 109.50944 * 302.65610 * 14 13 12 16 16 C 1.52998 * 109.51475 * 182.55632 * 14 13 12 17 17 H 1.08991 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46949 * 59.99868 * 16 14 13 19 19 N 1.46499 * 109.47117 * 300.00340 * 16 14 13 20 20 C 1.36935 * 120.00098 * 205.00400 * 19 16 14 21 21 H 1.08000 * 119.99625 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99986 * 179.97438 * 20 19 16 23 23 N 1.31620 * 120.00505 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99795 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47329 * 89.99906 * 24 22 20 26 26 H 1.48505 * 109.47013 * 209.99811 * 24 22 20 27 27 H 1.48501 * 109.46949 * 329.99290 * 24 22 20 28 28 C 1.47152 * 120.97833 * 176.30960 * 10 8 7 29 29 O 1.33927 * 125.62058 * 270.24018 * 4 3 2 30 30 H 1.08997 * 109.47290 * 60.00318 * 1 2 3 31 31 H 1.09006 * 109.46697 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47100 * 299.99936 * 1 2 3 33 33 H 1.08994 * 109.47403 * 60.00095 * 3 2 1 34 34 H 1.08993 * 109.47154 * 299.99599 * 3 2 1 35 35 H 1.07994 * 126.44983 * 359.95703 * 5 4 3 36 36 H 1.08006 * 126.64670 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.68671 * 249.16873 * 11 10 8 38 38 H 1.09007 * 109.67956 * 9.71733 * 11 10 8 39 39 H 1.09006 * 109.51568 * 292.38125 * 12 11 10 40 40 H 1.08999 * 109.51651 * 172.22479 * 12 11 10 41 41 H 1.09001 * 109.46845 * 300.00028 * 18 16 14 42 42 H 1.08995 * 109.47365 * 60.00450 * 18 16 14 43 43 H 1.09000 * 109.46755 * 180.02562 * 18 16 14 44 44 H 0.96999 * 119.99829 * 24.99058 * 19 16 14 45 45 H 0.96991 * 120.00358 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.67906 * 110.83663 * 28 10 8 47 47 H 1.08999 * 109.68701 * 350.27944 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2974 1.1242 -1.0976 6 6 5.6242 1.0197 -0.6517 7 6 5.5812 1.0241 0.7130 8 6 6.7364 0.9329 1.6120 9 8 7.8650 0.9689 1.1582 10 7 6.5480 0.8094 2.9409 11 6 5.1961 0.8442 3.5208 12 6 5.0333 -0.3711 4.4408 13 8 6.1211 -0.4087 5.3678 14 6 7.4042 -0.5697 4.7583 15 1 7.4120 -1.4820 4.1619 16 6 8.4782 -0.6599 5.8443 17 1 9.4560 -0.7830 5.3789 18 6 8.1895 -1.8599 6.7486 19 7 8.4684 0.5676 6.6439 20 6 9.5998 0.9619 7.3069 21 1 10.4992 0.3677 7.2405 22 6 9.5907 2.1253 8.0641 23 7 8.4947 2.8497 8.1445 24 14 11.1340 2.6628 8.9690 25 1 11.9455 3.5389 8.0865 26 1 10.7541 3.4103 10.1947 27 1 11.9290 1.4663 9.3455 28 6 7.6884 0.6354 3.8545 29 8 4.2893 1.1205 1.0896 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.9662 1.1497 -2.1252 36 1 6.5080 0.9494 -1.2686 37 1 5.0671 1.7605 4.0968 38 1 4.4536 0.8033 2.7238 39 1 5.0326 -1.2828 3.8432 40 1 4.0929 -0.2916 4.9862 41 1 7.2115 -1.7371 7.2140 42 1 8.1968 -2.7732 6.1538 43 1 8.9544 -1.9239 7.5225 44 1 7.6605 1.1011 6.7036 45 1 8.4882 3.6623 8.6739 46 1 7.8103 1.5308 4.4641 47 1 8.5963 0.4563 3.2786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675598707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:03 Heat of formation + Delta-G solvation = -70.266890 kcal Electronic energy + Delta-G solvation = -30172.948633 eV Core-core repulsion = 25938.417757 eV Total energy + Delta-G solvation = -4234.530876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.05466 -40.08211 -38.40015 -38.22363 -35.53421 -34.62863 -33.39499 -32.30528 -31.60645 -30.21432 -28.41768 -28.37311 -27.21930 -25.91191 -24.21632 -23.49369 -22.99525 -22.00977 -21.24166 -20.03592 -19.66011 -17.80084 -17.30561 -17.19452 -16.86877 -16.38976 -16.25574 -16.16532 -15.71407 -15.28554 -14.84499 -14.67321 -14.39673 -14.19541 -14.03448 -13.51293 -13.37000 -13.34835 -13.16686 -13.09532 -12.88049 -12.41285 -12.27895 -11.95125 -11.88067 -11.57279 -11.29965 -11.16249 -10.82049 -10.75388 -10.49996 -10.38348 -10.30913 -10.29031 -10.15809 -9.86714 -9.82678 -9.55259 -8.95124 -8.88824 -8.37547 -6.90025 -5.71203 -2.99637 0.76095 1.95970 2.22069 2.88962 3.08970 3.47159 3.48334 3.52550 3.53783 4.02985 4.18691 4.39098 4.57249 4.63291 4.69693 4.74100 4.86266 4.87265 4.90546 5.09296 5.16670 5.21253 5.31347 5.33843 5.40945 5.45467 5.54486 5.61863 5.73909 5.75755 5.85578 5.95318 6.02218 6.07432 6.23436 6.34041 6.42470 6.51015 6.54355 6.62977 6.69573 6.80620 7.16339 7.29585 7.49718 7.75054 7.97545 8.47051 9.59336 10.16281 10.53612 11.51071 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002623 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.243571 B =10673.476630 C =11066.116928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.139 3.861 4 C -0.002 4.002 5 C -0.189 4.189 6 C -0.125 4.125 7 C -0.057 4.057 8 C 0.597 3.403 9 O -0.520 6.520 10 N -0.599 5.599 11 C 0.056 3.944 12 C 0.050 3.950 13 O -0.358 6.358 14 C 0.078 3.922 15 H 0.056 0.944 16 C 0.183 3.817 17 H 0.061 0.939 18 C -0.160 4.160 19 N -0.717 5.717 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.282 1.282 28 C 0.086 3.914 29 O -0.149 6.149 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.390 0.610 45 H 0.254 0.746 46 H 0.102 0.898 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.447 -5.369 -18.999 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.063 3.937 4 C -0.054 4.054 5 C -0.209 4.209 6 C -0.145 4.145 7 C -0.109 4.109 8 C 0.385 3.615 9 O -0.398 6.398 10 N -0.331 5.331 11 C -0.066 4.066 12 C -0.028 4.028 13 O -0.276 6.276 14 C 0.018 3.982 15 H 0.074 0.926 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.220 4.220 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.036 4.036 29 O -0.046 6.046 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.225 0.775 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.675 -5.457 -18.622 25.585 hybrid contribution 0.278 0.750 0.127 0.810 sum -16.397 -4.706 -18.495 25.161 Atomic orbital electron populations 1.22820 0.79907 1.03428 1.00394 1.87992 1.20387 1.26511 1.95534 1.20735 0.84161 0.86014 1.02760 1.22386 0.92949 1.05007 0.85020 1.21600 0.92354 1.07239 0.99676 1.21952 0.98614 1.01115 0.92853 1.22247 0.81853 1.12038 0.94752 1.16703 0.86107 0.77575 0.81123 1.90883 1.21766 1.51625 1.75542 1.48140 1.08941 1.70466 1.05580 1.23028 0.83689 1.00889 0.98992 1.22875 0.91793 0.95922 0.92191 1.88110 1.13893 1.93746 1.31829 1.22938 0.84897 0.95407 0.94918 0.92636 1.20258 0.93602 0.88998 0.89951 0.92153 1.22348 1.02238 0.97080 1.00375 1.42389 1.13356 1.23505 1.56724 1.19243 0.90651 1.04771 1.22263 0.91192 1.24720 0.97127 0.97963 1.01051 1.69670 1.26373 1.16832 1.44991 0.86224 0.82656 0.78304 0.79203 1.21803 1.21897 1.20825 1.22563 0.88256 1.01368 0.91370 1.84173 1.16524 1.70477 1.33405 0.93655 0.89074 0.93502 0.90923 0.89612 0.82516 0.81952 0.89721 0.87095 0.93235 0.87808 0.92536 0.94842 0.92718 0.77513 0.93618 0.87987 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.24 10.69 -35.23 -0.38 -3.61 16 3 C 0.14 0.97 6.46 36.01 0.23 1.20 16 4 C 0.00 -0.02 6.94 -35.41 -0.25 -0.27 16 5 C -0.19 -1.81 10.77 -39.89 -0.43 -2.24 16 6 C -0.12 -1.47 10.63 -39.39 -0.42 -1.88 16 7 C -0.06 -0.78 6.86 -36.79 -0.25 -1.03 16 8 C 0.60 9.79 7.68 -12.86 -0.10 9.69 16 9 O -0.52 -9.88 16.36 5.19 0.08 -9.79 16 10 N -0.60 -9.62 3.02 -173.83 -0.52 -10.15 16 11 C 0.06 0.76 6.49 -3.54 -0.02 0.74 16 12 C 0.05 0.68 6.98 37.31 0.26 0.94 16 13 O -0.36 -6.28 9.22 -35.23 -0.32 -6.60 16 14 C 0.08 1.36 2.53 -26.58 -0.07 1.29 16 15 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 16 C 0.18 3.67 2.74 -67.93 -0.19 3.48 16 17 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 18 C -0.16 -3.00 9.35 37.16 0.35 -2.66 16 19 N -0.72 -17.82 4.29 -53.43 -0.23 -18.05 16 20 C -0.24 -6.56 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 24 Si 0.90 22.57 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.09 1.55 5.85 -3.53 -0.02 1.52 16 29 O -0.15 -1.80 7.10 5.02 0.04 -1.76 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.11 1.35 3.91 -54.76 -0.21 1.14 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.39 10.48 7.20 -40.82 -0.29 10.18 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.10 2.14 7.26 -51.93 -0.38 1.76 16 47 H 0.10 1.82 7.11 -51.93 -0.37 1.45 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -33.61 387.38 -6.95 -40.55 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.11 Total: 8.55 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.03 Total: 4.89 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.03 Total: -55.61 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.58 Total: -21.77 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.61 -6.95 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675598707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.714 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds