Wall clock time and date at job start Tue Mar 31 2020 20:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99783 * 2 1 4 4 C 1.50703 * 109.46708 * 179.97438 * 3 2 1 5 5 C 1.35133 * 125.61115 * 90.00613 * 4 3 2 6 6 C 1.40366 * 107.11147 * 179.97438 * 5 4 3 7 7 C 1.36542 * 106.70845 * 359.97438 * 6 5 4 8 8 C 1.46663 * 125.98737 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00351 * 6.84245 * 8 7 6 10 10 N 1.34780 * 119.99734 * 186.83684 * 8 7 6 11 11 C 1.47149 * 120.98619 * 356.33204 * 10 8 7 12 12 C 1.53291 * 108.38648 * 129.43901 * 11 10 8 13 13 O 1.42967 * 109.22027 * 52.30558 * 12 11 10 14 14 C 1.42962 * 114.16668 * 297.41896 * 13 12 11 15 15 H 1.08998 * 109.50944 * 302.65610 * 14 13 12 16 16 C 1.52998 * 109.51475 * 182.55632 * 14 13 12 17 17 H 1.08991 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46949 * 59.99868 * 16 14 13 19 19 N 1.46499 * 109.47117 * 300.00340 * 16 14 13 20 20 C 1.36935 * 120.00098 * 205.00400 * 19 16 14 21 21 H 1.08000 * 119.99625 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99986 * 179.97438 * 20 19 16 23 23 N 1.31620 * 120.00505 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99795 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47329 * 89.99906 * 24 22 20 26 26 H 1.48505 * 109.47013 * 209.99811 * 24 22 20 27 27 H 1.48501 * 109.46949 * 329.99290 * 24 22 20 28 28 C 1.47152 * 120.97833 * 176.30960 * 10 8 7 29 29 O 1.33927 * 125.62058 * 270.24018 * 4 3 2 30 30 H 1.08997 * 109.47290 * 60.00318 * 1 2 3 31 31 H 1.09006 * 109.46697 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47100 * 299.99936 * 1 2 3 33 33 H 1.08994 * 109.47403 * 60.00095 * 3 2 1 34 34 H 1.08993 * 109.47154 * 299.99599 * 3 2 1 35 35 H 1.07994 * 126.44983 * 359.95703 * 5 4 3 36 36 H 1.08006 * 126.64670 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.68671 * 249.16873 * 11 10 8 38 38 H 1.09007 * 109.67956 * 9.71733 * 11 10 8 39 39 H 1.09006 * 109.51568 * 292.38125 * 12 11 10 40 40 H 1.08999 * 109.51651 * 172.22479 * 12 11 10 41 41 H 1.09001 * 109.46845 * 300.00028 * 18 16 14 42 42 H 1.08995 * 109.47365 * 60.00450 * 18 16 14 43 43 H 1.09000 * 109.46755 * 180.02562 * 18 16 14 44 44 H 0.96999 * 119.99829 * 24.99058 * 19 16 14 45 45 H 0.96991 * 120.00358 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.67906 * 110.83663 * 28 10 8 47 47 H 1.08999 * 109.68701 * 350.27944 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2974 1.1242 -1.0976 6 6 5.6242 1.0197 -0.6517 7 6 5.5812 1.0241 0.7130 8 6 6.7364 0.9329 1.6120 9 8 7.8650 0.9689 1.1582 10 7 6.5480 0.8094 2.9409 11 6 5.1961 0.8442 3.5208 12 6 5.0333 -0.3711 4.4408 13 8 6.1211 -0.4087 5.3678 14 6 7.4042 -0.5697 4.7583 15 1 7.4120 -1.4820 4.1619 16 6 8.4782 -0.6599 5.8443 17 1 9.4560 -0.7830 5.3789 18 6 8.1895 -1.8599 6.7486 19 7 8.4684 0.5676 6.6439 20 6 9.5998 0.9619 7.3069 21 1 10.4992 0.3677 7.2405 22 6 9.5907 2.1253 8.0641 23 7 8.4947 2.8497 8.1445 24 14 11.1340 2.6628 8.9690 25 1 11.9455 3.5389 8.0865 26 1 10.7541 3.4103 10.1947 27 1 11.9290 1.4663 9.3455 28 6 7.6884 0.6354 3.8545 29 8 4.2893 1.1205 1.0896 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.9662 1.1497 -2.1252 36 1 6.5080 0.9494 -1.2686 37 1 5.0671 1.7605 4.0968 38 1 4.4536 0.8033 2.7238 39 1 5.0326 -1.2828 3.8432 40 1 4.0929 -0.2916 4.9862 41 1 7.2115 -1.7371 7.2140 42 1 8.1968 -2.7732 6.1538 43 1 8.9544 -1.9239 7.5225 44 1 7.6605 1.1011 6.7036 45 1 8.4882 3.6623 8.6739 46 1 7.8103 1.5308 4.4641 47 1 8.5963 0.4563 3.2786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675598707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:02 Heat of formation + Delta-G solvation = -93.968781 kcal Electronic energy + Delta-G solvation = -30173.976424 eV Core-core repulsion = 25938.417757 eV Total energy + Delta-G solvation = -4235.558667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.93617 -41.36852 -39.66150 -38.80668 -37.16083 -35.98965 -34.29643 -34.17567 -32.48661 -31.66552 -30.16222 -29.45469 -28.04120 -26.58331 -25.85373 -25.08207 -24.14783 -22.93456 -22.26021 -21.29686 -21.04673 -19.40316 -18.76943 -17.98307 -17.86505 -17.59050 -17.08504 -17.05891 -16.62269 -16.61258 -16.20601 -16.07162 -15.85659 -15.45721 -15.12198 -14.88922 -14.76913 -14.51437 -14.22152 -14.19428 -13.96709 -13.57358 -13.48340 -13.11569 -12.96067 -12.77944 -12.69622 -12.56598 -12.49825 -12.34950 -12.17204 -11.88290 -11.73465 -11.67295 -11.28644 -11.17417 -11.08963 -10.94430 -10.71913 -9.94158 -9.60546 -8.95168 -7.89183 -5.16584 -0.20167 1.13217 1.28134 1.48199 1.49585 1.57515 1.74693 1.94346 2.58249 2.75024 2.91934 3.28919 3.44390 3.62632 3.71256 3.80016 3.89968 3.93625 3.94595 4.08757 4.15836 4.23721 4.27094 4.31739 4.44908 4.52743 4.56741 4.58872 4.62219 4.66053 4.73572 4.81132 4.82869 4.91094 4.93734 4.94895 5.08759 5.19348 5.23722 5.31702 5.54835 5.60804 5.72937 6.09257 6.09777 6.20641 6.32713 6.72520 7.39459 8.14999 8.40526 9.34129 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002623 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.243571 B =10673.476630 C =11066.116928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.137 3.863 4 C 0.004 3.996 5 C -0.189 4.189 6 C -0.116 4.116 7 C -0.091 4.091 8 C 0.595 3.405 9 O -0.558 6.558 10 N -0.602 5.602 11 C 0.058 3.942 12 C 0.048 3.952 13 O -0.380 6.380 14 C 0.091 3.909 15 H 0.079 0.921 16 C 0.174 3.826 17 H 0.063 0.937 18 C -0.148 4.148 19 N -0.726 5.726 20 C -0.234 4.234 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.968 3.032 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.270 1.270 28 C 0.095 3.905 29 O -0.157 6.157 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.190 0.810 36 H 0.168 0.832 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.064 0.936 40 H 0.130 0.870 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.377 0.623 45 H 0.248 0.752 46 H 0.065 0.935 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.253 -6.474 -20.728 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.061 3.939 4 C -0.047 4.047 5 C -0.208 4.208 6 C -0.137 4.137 7 C -0.143 4.143 8 C 0.385 3.615 9 O -0.439 6.439 10 N -0.333 5.333 11 C -0.063 4.063 12 C -0.029 4.029 13 O -0.299 6.299 14 C 0.032 3.968 15 H 0.096 0.904 16 C 0.065 3.935 17 H 0.081 0.919 18 C -0.208 4.208 19 N -0.367 5.367 20 C -0.366 4.366 21 H 0.094 0.906 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.798 3.202 25 H -0.218 1.218 26 H -0.225 1.225 27 H -0.194 1.194 28 C -0.028 4.028 29 O -0.055 6.055 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.207 0.793 36 H 0.186 0.814 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.210 0.790 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.497 -6.613 -20.366 28.296 hybrid contribution 0.687 1.046 0.512 1.352 sum -17.810 -5.567 -19.854 27.246 Atomic orbital electron populations 1.23000 0.78149 1.04189 1.01666 1.87936 1.22315 1.27230 1.95829 1.21009 0.81913 0.86022 1.04911 1.23168 0.94359 1.02701 0.84451 1.21962 0.90961 1.06632 1.01210 1.22247 1.00077 0.99134 0.92197 1.21735 0.81914 1.15890 0.94734 1.17042 0.86649 0.76584 0.81224 1.90842 1.23463 1.53417 1.76201 1.48176 1.09191 1.70438 1.05514 1.23143 0.82893 1.00743 0.99519 1.23138 0.91407 0.96270 0.92067 1.88071 1.14450 1.93898 1.33457 1.22681 0.84638 0.95792 0.93701 0.90351 1.20504 0.94945 0.87695 0.90374 0.91949 1.22171 1.00969 0.97720 0.99953 1.42501 1.12089 1.25025 1.57117 1.19630 0.91517 1.04330 1.21090 0.90559 1.25486 0.99933 0.98592 1.02835 1.69830 1.28379 1.17279 1.46400 0.85212 0.79424 0.77993 0.77576 1.21822 1.22477 1.19442 1.22221 0.89080 1.00151 0.91317 1.84071 1.15992 1.70876 1.34555 0.91887 0.88682 0.92712 0.89810 0.86432 0.79287 0.81415 0.90685 0.85199 0.91735 0.85229 0.93616 0.91369 0.94122 0.79014 0.94299 0.91679 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.74 10.69 -148.98 -1.59 -7.33 16 3 C 0.14 1.44 6.46 71.24 0.46 1.90 16 4 C 0.00 0.08 6.94 24.97 0.17 0.25 16 5 C -0.19 -3.07 10.77 22.07 0.24 -2.84 16 6 C -0.12 -2.57 10.63 22.39 0.24 -2.33 16 7 C -0.09 -2.46 6.86 24.07 0.17 -2.29 16 8 C 0.60 19.95 7.68 86.44 0.66 20.62 16 9 O -0.56 -22.00 16.36 -4.33 -0.07 -22.07 16 10 N -0.60 -19.75 3.02 -822.08 -2.48 -22.23 16 11 C 0.06 1.57 6.49 86.35 0.56 2.13 16 12 C 0.05 1.23 6.98 72.08 0.50 1.74 16 13 O -0.38 -13.17 9.22 -148.98 -1.37 -14.54 16 14 C 0.09 3.18 2.53 30.69 0.08 3.25 16 15 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 16 C 0.17 6.99 2.74 44.99 0.12 7.11 16 17 H 0.06 2.48 8.08 -2.39 -0.02 2.46 16 18 C -0.15 -5.41 9.35 71.98 0.67 -4.73 16 19 N -0.73 -36.97 4.29 -322.95 -1.38 -38.36 16 20 C -0.23 -13.06 9.93 84.03 0.83 -12.23 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 23 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 24 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 28 C 0.09 3.56 5.85 86.35 0.51 4.06 16 29 O -0.16 -3.58 7.10 -4.95 -0.04 -3.61 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.13 3.03 3.91 -47.23 -0.18 2.85 16 39 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.04 1.75 7.68 -2.39 -0.02 1.73 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.38 21.03 7.20 -92.71 -0.67 20.36 16 45 H 0.25 15.07 8.31 -92.72 -0.77 14.30 16 46 H 0.06 2.92 7.26 -2.39 -0.02 2.90 16 47 H 0.09 3.46 7.11 -2.39 -0.02 3.44 16 Total: -1.00 -74.91 387.38 2.44 -72.47 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.14 Total: 32.40 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 6.93 Total: 14.06 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.58 Total: -120.62 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -3.07 Total: -47.56 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -74.91 2.44 -72.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675598707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.501 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds