Wall clock time and date at job start Tue Mar 31 2020 20:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99798 * 2 1 4 4 C 1.50703 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.35121 * 125.61380 * 90.00266 * 4 3 2 6 6 C 1.40367 * 107.11544 * 179.97438 * 5 4 3 7 7 C 1.36540 * 106.70577 * 0.02562 * 6 5 4 8 8 C 1.46663 * 125.98411 * 179.97438 * 7 6 5 9 9 O 1.21685 * 120.00465 * 352.59322 * 8 7 6 10 10 N 1.34779 * 119.99686 * 172.60156 * 8 7 6 11 11 C 1.47158 * 120.98266 * 353.12520 * 10 8 7 12 12 C 1.53297 * 108.38564 * 230.55183 * 11 10 8 13 13 O 1.42966 * 109.21999 * 307.69856 * 12 11 10 14 14 C 1.42964 * 114.16679 * 62.58067 * 13 12 11 15 15 H 1.09002 * 109.51482 * 57.39573 * 14 13 12 16 16 C 1.53005 * 109.51014 * 177.49537 * 14 13 12 17 17 H 1.08993 * 109.47101 * 174.89818 * 16 14 13 18 18 C 1.52995 * 109.47263 * 54.89601 * 16 14 13 19 19 N 1.46499 * 109.47111 * 294.89798 * 16 14 13 20 20 C 1.36932 * 119.99967 * 205.00155 * 19 16 14 21 21 H 1.07996 * 120.00153 * 359.97438 * 20 19 16 22 22 C 1.38820 * 120.00078 * 180.02562 * 20 19 16 23 23 N 1.31618 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47286 * 59.99766 * 24 22 20 26 26 H 1.48497 * 109.47135 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47138 * 299.99683 * 24 22 20 28 28 C 1.47163 * 120.94441 * 173.17734 * 10 8 7 29 29 O 1.33931 * 125.61608 * 270.24327 * 4 3 2 30 30 H 1.09002 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47146 * 299.99268 * 1 2 3 32 32 H 1.08994 * 109.47226 * 59.99793 * 1 2 3 33 33 H 1.09003 * 109.46800 * 60.00559 * 3 2 1 34 34 H 1.08999 * 109.47256 * 300.00390 * 3 2 1 35 35 H 1.07999 * 126.44645 * 359.96040 * 5 4 3 36 36 H 1.08004 * 126.64790 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.68392 * 110.82703 * 11 10 8 38 38 H 1.09000 * 109.71203 * 350.28768 * 11 10 8 39 39 H 1.08996 * 109.51681 * 187.77459 * 12 11 10 40 40 H 1.08999 * 109.51184 * 67.61612 * 12 11 10 41 41 H 1.09005 * 109.46899 * 59.99678 * 18 16 14 42 42 H 1.08998 * 109.47431 * 180.02562 * 18 16 14 43 43 H 1.09002 * 109.47677 * 300.00492 * 18 16 14 44 44 H 0.97008 * 120.00017 * 25.00172 * 19 16 14 45 45 H 0.97012 * 119.99541 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.72701 * 9.75049 * 28 10 8 47 47 H 1.09005 * 109.64145 * 249.19538 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2964 1.1247 -1.0994 6 6 5.6237 1.0202 -0.6547 7 6 5.5816 1.0230 0.7101 8 6 6.7376 0.9312 1.6080 9 8 7.8443 0.7075 1.1543 10 7 6.5740 1.0944 2.9359 11 6 5.2781 1.5126 3.4938 12 6 5.5169 2.6994 4.4343 13 8 6.5331 2.3543 5.3788 14 6 7.8076 2.0786 4.7927 15 1 8.1371 2.9421 4.2148 16 6 8.8250 1.7844 5.8970 17 1 9.7723 1.4861 5.4481 18 6 8.3021 0.6527 6.7839 19 7 9.0265 2.9874 6.7084 20 6 10.1980 3.1614 7.3956 21 1 10.9733 2.4116 7.3397 22 6 10.3888 4.3010 8.1650 23 7 9.4437 5.2145 8.2335 24 14 11.9872 4.5387 9.1018 25 1 13.1234 4.5570 8.1457 26 1 11.9414 5.8264 9.8401 27 1 12.1679 3.4221 10.0640 28 6 7.6870 0.8606 3.8698 29 8 4.2901 1.1202 1.0878 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 3.9644 1.1506 -2.1268 36 1 6.5069 0.9501 -1.2723 37 1 4.8342 0.6869 4.0499 38 1 4.6099 1.8127 2.6865 39 1 4.5937 2.9364 4.9631 40 1 5.8376 3.5647 3.8543 41 1 8.1521 -0.2423 6.1801 42 1 9.0266 0.4434 7.5708 43 1 7.3546 0.9510 7.2328 44 1 8.3299 3.6607 6.7589 45 1 9.5771 6.0111 8.7708 46 1 8.6142 0.7296 3.3118 47 1 7.4860 -0.0313 4.4634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675598711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:10 Heat of formation + Delta-G solvation = -73.021765 kcal Electronic energy + Delta-G solvation = -29803.080090 eV Core-core repulsion = 25568.429754 eV Total energy + Delta-G solvation = -4234.650336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.12743 -40.23018 -38.47205 -38.29774 -35.58028 -34.67558 -33.47245 -32.52747 -31.66559 -30.32208 -28.65564 -28.11587 -27.05495 -25.93897 -24.72662 -23.48926 -22.99480 -22.08007 -21.34320 -20.11023 -19.62229 -17.91105 -17.41455 -17.19134 -16.84903 -16.52165 -16.33070 -16.21779 -15.87398 -15.27137 -15.07757 -14.67933 -14.55446 -14.26815 -14.10528 -13.54787 -13.49537 -13.29434 -13.22917 -13.20903 -12.84531 -12.50677 -12.41620 -12.08253 -11.99904 -11.86051 -11.31211 -11.12546 -10.82228 -10.71473 -10.61117 -10.43099 -10.35338 -10.33425 -10.21099 -9.90546 -9.84182 -9.63174 -9.03214 -8.87048 -8.51630 -6.91392 -5.71272 -2.99972 0.66687 1.85623 2.15968 2.72774 2.96142 3.42688 3.47435 3.51620 3.52620 3.99046 4.09754 4.31739 4.50916 4.59331 4.63042 4.68155 4.76957 4.81583 4.85522 4.97159 5.11781 5.16419 5.16973 5.24944 5.32238 5.35875 5.46732 5.59793 5.66005 5.68496 5.76105 5.81046 5.98120 5.99522 6.00032 6.19048 6.31810 6.46068 6.47848 6.53057 6.67011 6.84084 7.11168 7.18755 7.47571 7.73505 7.82054 8.46879 9.58655 10.16246 10.52943 11.51093 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.002274 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.831411 B =12312.217966 C =12808.902945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.139 3.861 4 C 0.002 3.998 5 C -0.190 4.190 6 C -0.122 4.122 7 C -0.060 4.060 8 C 0.601 3.399 9 O -0.518 6.518 10 N -0.602 5.602 11 C 0.064 3.936 12 C 0.048 3.952 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.065 0.935 16 C 0.185 3.815 17 H 0.060 0.940 18 C -0.163 4.163 19 N -0.719 5.719 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.082 3.918 29 O -0.150 6.150 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.389 0.611 45 H 0.255 0.745 46 H 0.103 0.897 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.790 -9.043 -19.486 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.063 3.937 4 C -0.050 4.050 5 C -0.209 4.209 6 C -0.143 4.143 7 C -0.112 4.112 8 C 0.389 3.611 9 O -0.395 6.395 10 N -0.335 5.335 11 C -0.058 4.058 12 C -0.030 4.030 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.083 0.917 16 C 0.074 3.926 17 H 0.078 0.922 18 C -0.223 4.223 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.040 4.040 29 O -0.047 6.047 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.033 -9.316 -19.107 28.533 hybrid contribution 0.340 0.615 0.116 0.712 sum -18.693 -8.702 -18.992 28.033 Atomic orbital electron populations 1.22822 0.79855 1.03455 1.00419 1.87994 1.20430 1.26479 1.95536 1.20743 0.84071 0.86058 1.02799 1.22343 0.92910 1.04894 0.84836 1.21621 0.92337 1.07187 0.99764 1.21978 0.98678 1.00768 0.92869 1.22145 0.81960 1.12466 0.94665 1.16673 0.85840 0.77568 0.81048 1.90885 1.23250 1.50076 1.75322 1.48074 1.13207 1.66780 1.05424 1.22876 0.84746 0.99159 0.99053 1.22907 0.93332 0.94957 0.91841 1.88107 1.18597 1.88951 1.31834 1.22992 0.84905 0.95397 0.95079 0.91692 1.20195 0.93342 0.89354 0.89673 0.92201 1.22421 1.01960 0.97467 1.00433 1.42343 1.18720 1.19829 1.55136 1.19206 0.93596 1.03002 1.21222 0.91195 1.24744 0.98044 0.97199 1.00985 1.69674 1.33026 1.10684 1.44556 0.86272 0.83266 0.76928 0.79732 1.21304 1.21768 1.21296 1.22619 0.90403 0.99718 0.91228 1.84190 1.16428 1.70185 1.33889 0.89062 0.93500 0.93602 0.90910 0.89534 0.82424 0.81888 0.90136 0.87713 0.87696 0.92833 0.94660 0.92843 0.92418 0.77671 0.93541 0.87843 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -3.06 10.69 -35.23 -0.38 -3.44 16 3 C 0.14 0.87 6.46 36.01 0.23 1.11 16 4 C 0.00 0.02 6.94 -35.42 -0.25 -0.23 16 5 C -0.19 -1.67 10.77 -39.89 -0.43 -2.10 16 6 C -0.12 -1.33 10.63 -39.39 -0.42 -1.75 16 7 C -0.06 -0.76 6.76 -36.80 -0.25 -1.01 16 8 C 0.60 8.92 7.66 -12.86 -0.10 8.82 16 9 O -0.52 -9.02 16.35 5.20 0.09 -8.93 16 10 N -0.60 -8.49 3.02 -173.81 -0.53 -9.01 16 11 C 0.06 0.76 6.25 -3.53 -0.02 0.73 16 12 C 0.05 0.62 6.99 37.31 0.26 0.88 16 13 O -0.36 -6.16 9.24 -35.23 -0.33 -6.49 16 14 C 0.08 1.32 2.61 -26.58 -0.07 1.25 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.19 3.74 2.77 -67.93 -0.19 3.56 16 17 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 18 C -0.16 -3.03 9.06 37.15 0.34 -2.69 16 19 N -0.72 -18.39 5.10 -53.43 -0.27 -18.66 16 20 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 24 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.08 1.24 5.84 -3.53 -0.02 1.22 16 29 O -0.15 -1.67 7.30 5.00 0.04 -1.63 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.11 4.45 -52.27 -0.23 0.88 16 39 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 44 H 0.39 10.75 7.58 -40.82 -0.31 10.44 16 45 H 0.25 7.56 8.31 -40.81 -0.34 7.22 16 46 H 0.10 1.60 7.06 -51.93 -0.37 1.23 16 47 H 0.09 1.21 6.27 -51.93 -0.33 0.88 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -34.49 385.91 -6.91 -41.39 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.00 Total: 7.43 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.04 Total: 3.69 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.07 Total: -55.48 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.58 Total: -20.49 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.49 -6.91 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675598711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.631 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds