Wall clock time and date at job start Tue Mar 31 2020 20:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99798 * 2 1 4 4 C 1.50703 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.35121 * 125.61380 * 90.00266 * 4 3 2 6 6 C 1.40367 * 107.11544 * 179.97438 * 5 4 3 7 7 C 1.36540 * 106.70577 * 0.02562 * 6 5 4 8 8 C 1.46663 * 125.98411 * 179.97438 * 7 6 5 9 9 O 1.21685 * 120.00465 * 352.59322 * 8 7 6 10 10 N 1.34779 * 119.99686 * 172.60156 * 8 7 6 11 11 C 1.47158 * 120.98266 * 353.12520 * 10 8 7 12 12 C 1.53297 * 108.38564 * 230.55183 * 11 10 8 13 13 O 1.42966 * 109.21999 * 307.69856 * 12 11 10 14 14 C 1.42964 * 114.16679 * 62.58067 * 13 12 11 15 15 H 1.09002 * 109.51482 * 57.39573 * 14 13 12 16 16 C 1.53005 * 109.51014 * 177.49537 * 14 13 12 17 17 H 1.08993 * 109.47101 * 174.89818 * 16 14 13 18 18 C 1.52995 * 109.47263 * 54.89601 * 16 14 13 19 19 N 1.46499 * 109.47111 * 294.89798 * 16 14 13 20 20 C 1.36932 * 119.99967 * 205.00155 * 19 16 14 21 21 H 1.07996 * 120.00153 * 359.97438 * 20 19 16 22 22 C 1.38820 * 120.00078 * 180.02562 * 20 19 16 23 23 N 1.31618 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47286 * 59.99766 * 24 22 20 26 26 H 1.48497 * 109.47135 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47138 * 299.99683 * 24 22 20 28 28 C 1.47163 * 120.94441 * 173.17734 * 10 8 7 29 29 O 1.33931 * 125.61608 * 270.24327 * 4 3 2 30 30 H 1.09002 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47146 * 299.99268 * 1 2 3 32 32 H 1.08994 * 109.47226 * 59.99793 * 1 2 3 33 33 H 1.09003 * 109.46800 * 60.00559 * 3 2 1 34 34 H 1.08999 * 109.47256 * 300.00390 * 3 2 1 35 35 H 1.07999 * 126.44645 * 359.96040 * 5 4 3 36 36 H 1.08004 * 126.64790 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.68392 * 110.82703 * 11 10 8 38 38 H 1.09000 * 109.71203 * 350.28768 * 11 10 8 39 39 H 1.08996 * 109.51681 * 187.77459 * 12 11 10 40 40 H 1.08999 * 109.51184 * 67.61612 * 12 11 10 41 41 H 1.09005 * 109.46899 * 59.99678 * 18 16 14 42 42 H 1.08998 * 109.47431 * 180.02562 * 18 16 14 43 43 H 1.09002 * 109.47677 * 300.00492 * 18 16 14 44 44 H 0.97008 * 120.00017 * 25.00172 * 19 16 14 45 45 H 0.97012 * 119.99541 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.72701 * 9.75049 * 28 10 8 47 47 H 1.09005 * 109.64145 * 249.19538 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2964 1.1247 -1.0994 6 6 5.6237 1.0202 -0.6547 7 6 5.5816 1.0230 0.7101 8 6 6.7376 0.9312 1.6080 9 8 7.8443 0.7075 1.1543 10 7 6.5740 1.0944 2.9359 11 6 5.2781 1.5126 3.4938 12 6 5.5169 2.6994 4.4343 13 8 6.5331 2.3543 5.3788 14 6 7.8076 2.0786 4.7927 15 1 8.1371 2.9421 4.2148 16 6 8.8250 1.7844 5.8970 17 1 9.7723 1.4861 5.4481 18 6 8.3021 0.6527 6.7839 19 7 9.0265 2.9874 6.7084 20 6 10.1980 3.1614 7.3956 21 1 10.9733 2.4116 7.3397 22 6 10.3888 4.3010 8.1650 23 7 9.4437 5.2145 8.2335 24 14 11.9872 4.5387 9.1018 25 1 13.1234 4.5570 8.1457 26 1 11.9414 5.8264 9.8401 27 1 12.1679 3.4221 10.0640 28 6 7.6870 0.8606 3.8698 29 8 4.2901 1.1202 1.0878 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 3.9644 1.1506 -2.1268 36 1 6.5069 0.9501 -1.2723 37 1 4.8342 0.6869 4.0499 38 1 4.6099 1.8127 2.6865 39 1 4.5937 2.9364 4.9631 40 1 5.8376 3.5647 3.8543 41 1 8.1521 -0.2423 6.1801 42 1 9.0266 0.4434 7.5708 43 1 7.3546 0.9510 7.2328 44 1 8.3299 3.6607 6.7589 45 1 9.5771 6.0111 8.7708 46 1 8.6142 0.7296 3.3118 47 1 7.4860 -0.0313 4.4634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675598711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:10 Heat of formation + Delta-G solvation = -97.702107 kcal Electronic energy + Delta-G solvation = -29804.150310 eV Core-core repulsion = 25568.429754 eV Total energy + Delta-G solvation = -4235.720556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.92035 -41.40719 -39.67756 -38.81448 -37.18227 -35.96038 -34.38720 -34.23734 -32.50548 -31.82292 -30.03956 -29.23923 -27.91976 -26.70218 -26.19744 -24.99315 -24.14726 -22.95770 -22.30644 -21.25287 -20.97583 -19.33100 -18.82124 -18.09186 -17.80447 -17.53262 -17.12651 -17.05443 -16.75456 -16.57012 -16.30022 -16.07574 -15.80804 -15.59529 -15.17661 -14.87718 -14.62281 -14.51515 -14.24338 -14.18507 -13.99089 -13.61037 -13.58101 -13.16042 -12.96850 -12.83164 -12.79083 -12.46827 -12.41991 -12.35454 -12.22352 -11.91074 -11.74703 -11.64817 -11.38729 -11.19943 -11.06949 -10.92585 -10.72894 -9.94217 -9.60389 -9.00578 -7.91409 -5.20181 -0.20357 1.10224 1.30624 1.47735 1.51108 1.56839 1.73609 1.94171 2.57338 2.73840 2.91589 3.29470 3.42106 3.53259 3.70600 3.80354 3.86415 3.90556 3.97452 4.05889 4.16987 4.26048 4.30023 4.34744 4.38544 4.51779 4.55270 4.57029 4.59723 4.61463 4.69967 4.73846 4.79965 4.87137 4.92817 4.92942 5.08504 5.16230 5.25149 5.29795 5.52183 5.61931 5.71633 6.05705 6.09451 6.18998 6.29800 6.71281 7.36121 8.11429 8.36485 9.31907 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.002274 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.831411 B =12312.217966 C =12808.902945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.137 3.863 4 C 0.007 3.993 5 C -0.191 4.191 6 C -0.118 4.118 7 C -0.092 4.092 8 C 0.599 3.401 9 O -0.555 6.555 10 N -0.605 5.605 11 C 0.071 3.929 12 C 0.043 3.957 13 O -0.378 6.378 14 C 0.089 3.911 15 H 0.041 0.959 16 C 0.177 3.823 17 H 0.061 0.939 18 C -0.149 4.149 19 N -0.732 5.732 20 C -0.240 4.240 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.974 3.026 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.278 1.278 28 C 0.092 3.908 29 O -0.157 6.157 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.188 0.812 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.096 0.904 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.572 -10.044 -20.782 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.061 3.939 4 C -0.045 4.045 5 C -0.210 4.210 6 C -0.139 4.139 7 C -0.144 4.144 8 C 0.388 3.612 9 O -0.435 6.435 10 N -0.337 5.337 11 C -0.051 4.051 12 C -0.034 4.034 13 O -0.297 6.297 14 C 0.030 3.970 15 H 0.059 0.941 16 C 0.068 3.932 17 H 0.079 0.921 18 C -0.209 4.209 19 N -0.372 5.372 20 C -0.371 4.371 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.204 1.204 28 C -0.031 4.031 29 O -0.054 6.054 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.205 0.795 36 H 0.185 0.815 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.207 0.793 45 H 0.058 0.942 46 H 0.114 0.886 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.838 -10.365 -20.422 30.963 hybrid contribution 0.732 0.888 0.392 1.216 sum -20.105 -9.478 -20.029 29.920 Atomic orbital electron populations 1.22997 0.78134 1.04159 1.01705 1.87937 1.22343 1.27391 1.95838 1.21024 0.81917 0.85955 1.04988 1.23094 0.94273 1.02787 0.84349 1.21967 0.91090 1.06676 1.01234 1.22258 1.00020 0.99215 0.92419 1.21744 0.82116 1.15789 0.94704 1.16955 0.86183 0.76764 0.81250 1.90849 1.24834 1.51893 1.75973 1.48143 1.13605 1.66646 1.05293 1.22951 0.83946 0.98920 0.99236 1.23167 0.93126 0.95294 0.91822 1.88061 1.18884 1.89235 1.33521 1.22598 0.84817 0.95630 0.93955 0.94060 1.20425 0.94586 0.88087 0.90111 0.92079 1.22223 1.00656 0.98008 0.99975 1.42517 1.17710 1.21246 1.55774 1.19620 0.94349 1.02776 1.20397 0.90448 1.25576 1.01422 0.97330 1.02714 1.69841 1.35083 1.11196 1.45893 0.85208 0.79518 0.76572 0.78438 1.20468 1.22299 1.20363 1.22403 0.90896 0.98740 0.91022 1.84127 1.15898 1.70497 1.34857 0.88773 0.92640 0.91865 0.89583 0.86481 0.79465 0.81496 0.88829 0.86181 0.84984 0.93536 0.91078 0.94278 0.93500 0.79296 0.94153 0.88556 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.41 -5.51 10.69 -148.98 -1.59 -7.10 16 3 C 0.14 1.27 6.46 71.24 0.46 1.73 16 4 C 0.01 0.10 6.94 24.97 0.17 0.28 16 5 C -0.19 -2.88 10.77 22.07 0.24 -2.65 16 6 C -0.12 -2.44 10.63 22.39 0.24 -2.21 16 7 C -0.09 -2.25 6.76 24.07 0.16 -2.09 16 8 C 0.60 17.82 7.66 86.44 0.66 18.49 16 9 O -0.55 -19.78 16.35 -4.30 -0.07 -19.85 16 10 N -0.61 -16.79 3.02 -822.02 -2.48 -19.28 16 11 C 0.07 1.57 6.25 86.35 0.54 2.11 16 12 C 0.04 1.09 6.99 72.08 0.50 1.59 16 13 O -0.38 -13.04 9.24 -148.98 -1.38 -14.42 16 14 C 0.09 3.17 2.61 30.69 0.08 3.25 16 15 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 16 C 0.18 7.21 2.77 44.99 0.12 7.34 16 17 H 0.06 2.47 8.08 -2.39 -0.02 2.45 16 18 C -0.15 -5.43 9.06 71.98 0.65 -4.78 16 19 N -0.73 -38.31 5.10 -322.95 -1.65 -39.96 16 20 C -0.24 -13.60 9.93 84.04 0.83 -12.77 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 24 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 C 0.09 2.74 5.84 86.35 0.50 3.24 16 29 O -0.16 -3.21 7.30 -5.03 -0.04 -3.25 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.12 2.34 4.45 -7.76 -0.03 2.31 16 39 H 0.13 2.59 8.14 -2.39 -0.02 2.58 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 2.06 6.42 -2.38 -0.02 2.04 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 44 H 0.38 21.42 7.58 -92.70 -0.70 20.72 16 45 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 46 H 0.10 3.02 7.06 -2.38 -0.02 3.00 16 47 H 0.10 2.67 6.27 -2.38 -0.01 2.65 16 Total: -1.00 -76.18 385.91 2.26 -73.92 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.26 Total: 30.48 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.89 Total: 10.81 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -3.85 Total: -119.77 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -3.08 Total: -44.61 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.18 2.26 -73.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675598711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.779 kcal (2) G-P(sol) polarization free energy of solvation -76.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds