Wall clock time and date at job start Tue Mar 31 2020 20:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47096 * 2 1 4 4 N 1.46502 * 109.47206 * 119.99872 * 2 1 3 5 5 C 1.36949 * 119.99509 * 275.00310 * 4 2 1 6 6 H 1.07998 * 119.99986 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99417 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00116 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99719 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47262 * 119.99819 * 9 7 5 12 12 H 1.48502 * 109.47344 * 239.99933 * 9 7 5 13 13 C 1.52996 * 109.47123 * 239.99682 * 2 1 3 14 14 H 1.09007 * 109.51330 * 184.89832 * 13 2 1 15 15 C 1.52876 * 109.62637 * 64.90906 * 13 2 1 16 16 N 1.47153 * 108.60773 * 187.89573 * 15 13 2 17 17 C 1.34777 * 120.97882 * 230.49560 * 16 15 13 18 18 O 1.21283 * 120.00463 * 359.72365 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.44488 * 17 16 15 20 20 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 21 21 C 1.52997 * 109.47000 * 179.97438 * 20 19 17 22 22 C 1.53011 * 109.46712 * 179.97438 * 21 20 19 23 23 F 1.39892 * 109.47085 * 60.00436 * 22 21 20 24 24 F 1.39903 * 109.46649 * 180.02562 * 22 21 20 25 25 F 1.39897 * 109.46966 * 299.99975 * 22 21 20 26 26 C 1.47152 * 118.03529 * 50.22967 * 16 15 13 27 27 C 1.53295 * 108.38013 * 309.71128 * 26 16 15 28 28 O 1.42960 * 109.22606 * 52.30637 * 27 26 16 29 29 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47422 * 300.00586 * 1 2 3 31 31 H 1.09004 * 109.46777 * 60.00584 * 1 2 3 32 32 H 0.96994 * 120.00576 * 94.99587 * 4 2 1 33 33 H 0.97012 * 119.99689 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.61981 * 68.07543 * 15 13 2 35 35 H 1.09004 * 109.52433 * 307.66006 * 15 13 2 36 36 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 37 37 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 38 38 H 1.09000 * 109.46887 * 300.00372 * 20 19 17 39 39 H 1.08998 * 109.46846 * 59.99549 * 20 19 17 40 40 H 1.08995 * 109.47672 * 299.99669 * 21 20 19 41 41 H 1.09001 * 109.47109 * 60.00906 * 21 20 19 42 42 H 1.08997 * 109.68588 * 69.44009 * 26 16 15 43 43 H 1.08998 * 109.67763 * 189.99475 * 26 16 15 44 44 H 1.09004 * 109.50912 * 172.23171 * 27 26 16 45 45 H 1.09005 * 109.51501 * 292.33092 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0073 2.3758 6 1 1.8925 1.0407 2.4241 7 6 2.6113 -0.6618 3.5093 8 7 2.9234 -1.9390 3.4505 9 14 2.7903 0.2703 5.1182 10 1 2.3762 1.6827 4.9207 11 1 1.9291 -0.3573 6.1524 12 1 4.2071 0.2266 5.5607 13 6 2.0400 -0.7213 -1.2492 14 1 3.1265 -0.7983 -1.2071 15 6 1.6354 0.0642 -2.4968 16 7 1.9668 -0.7384 -3.6848 17 6 2.6710 -0.2094 -4.7050 18 8 3.0372 0.9458 -4.6545 19 6 3.0089 -1.0551 -5.9057 20 6 3.8128 -0.2222 -6.9063 21 6 4.1563 -1.0811 -8.1250 22 6 4.9597 -0.2479 -9.1258 23 9 6.1401 0.1967 -8.5210 24 9 5.2733 -1.0331 -10.2405 25 9 4.1995 0.8543 -9.5313 26 6 1.5118 -2.1372 -3.7235 27 6 1.9270 -2.8170 -2.4137 28 8 1.4705 -2.0312 -1.3102 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6317 1.1528 33 1 3.2461 -2.3965 4.2428 34 1 2.1800 1.0079 -2.5277 35 1 0.5632 0.2591 -2.4728 36 1 3.6006 -1.9144 -5.5901 37 1 2.0889 -1.4009 -6.3771 38 1 3.2211 0.6371 -7.2219 39 1 4.7327 0.1235 -6.4349 40 1 4.7481 -1.9401 -7.8091 41 1 3.2365 -1.4270 -8.5966 42 1 0.4270 -2.1678 -3.8252 43 1 1.9746 -2.6506 -4.5663 44 1 1.4817 -3.8106 -2.3622 45 1 3.0131 -2.9024 -2.3762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675615472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:31 Heat of formation + Delta-G solvation = -254.086497 kcal Electronic energy + Delta-G solvation = -29825.267829 eV Core-core repulsion = 25040.909197 eV Total energy + Delta-G solvation = -4784.358632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.04674 -48.55552 -48.54598 -41.48204 -39.70912 -37.11704 -35.98859 -35.71348 -34.33174 -32.04033 -30.71514 -29.94571 -28.37618 -26.53309 -25.47888 -24.70452 -23.55461 -22.52988 -21.17932 -20.15512 -19.50431 -19.30986 -19.23419 -18.62094 -17.86753 -17.56570 -17.07474 -16.93597 -16.49951 -16.09665 -16.02291 -15.69769 -15.46104 -15.26018 -15.13488 -15.05266 -14.96306 -14.70595 -14.70272 -14.40563 -14.25244 -14.00420 -13.77509 -13.55840 -13.21228 -13.07523 -12.95884 -12.86031 -12.77959 -12.44795 -12.38493 -12.26872 -12.13601 -11.82895 -11.81550 -11.64150 -11.54598 -11.15292 -10.93794 -10.79286 -9.56588 -9.00763 -7.92873 -5.21315 1.47259 1.47809 1.57478 1.58250 1.76853 1.96624 2.56321 2.81977 2.91091 3.05775 3.15339 3.41046 3.48906 3.62051 3.93061 3.97180 3.98602 4.02524 4.03487 4.17564 4.25975 4.36364 4.40605 4.46658 4.51065 4.59276 4.62533 4.66191 4.69061 4.85690 4.88706 4.99827 5.02169 5.09710 5.19609 5.24923 5.34507 5.51689 5.62051 6.27604 6.30116 6.35959 7.10782 7.35392 8.10977 8.35833 9.30778 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022150 B = 0.002002 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.818290 B =13983.005560 C =14300.810599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.238 4.238 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.294 1.294 13 C 0.093 3.907 14 H 0.037 0.963 15 C 0.091 3.909 16 N -0.616 5.616 17 C 0.505 3.495 18 O -0.589 6.589 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.153 4.153 22 C 0.444 3.556 23 F -0.197 7.197 24 F -0.190 7.190 25 F -0.195 7.195 26 C 0.076 3.924 27 C 0.033 3.967 28 O -0.384 6.384 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.129 0.871 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -3.991 -29.124 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.370 4.370 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.221 1.221 12 H -0.222 1.222 13 C 0.033 3.967 14 H 0.055 0.945 15 C -0.033 4.033 16 N -0.350 5.350 17 C 0.296 3.704 18 O -0.469 6.469 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.190 4.190 22 C 0.390 3.610 23 F -0.179 7.179 24 F -0.171 7.171 25 F -0.177 7.177 26 C -0.046 4.046 27 C -0.044 4.044 28 O -0.303 6.303 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.111 0.889 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.700 -3.276 -28.887 29.122 hybrid contribution 0.779 0.511 1.058 1.409 sum -0.921 -2.765 -27.830 27.982 Atomic orbital electron populations 1.22202 0.96856 1.01214 1.00427 1.20432 0.93932 0.94416 0.84661 0.92719 1.42528 1.78292 1.10467 1.05960 1.19678 1.34786 0.94165 0.88337 0.90626 1.25547 1.03083 0.96924 1.01412 1.69845 1.52701 1.10173 1.29232 0.85094 0.76736 0.78192 0.79879 1.19075 1.22091 1.22162 1.22417 0.95829 0.83970 0.94441 0.94504 1.22075 1.02108 0.95128 0.83968 1.48336 1.54844 1.13853 1.17926 1.21554 0.76177 0.87852 0.84811 1.90710 1.54679 1.20498 1.81044 1.21703 1.04233 0.98806 0.91797 1.21270 1.01139 0.98279 0.94192 1.22932 1.03328 0.98913 0.93852 1.21129 0.78679 0.79261 0.81937 1.93174 1.50967 1.90544 1.83199 1.93183 1.93604 1.74196 1.56164 1.93171 1.75747 1.57051 1.91740 1.22747 1.02194 0.79725 0.99937 1.23270 0.99536 0.95990 0.85600 1.88056 1.67931 1.25508 1.48828 0.93369 0.94546 0.91176 0.79244 0.94130 0.89956 0.89216 0.85351 0.84585 0.91450 0.92040 0.84574 0.84165 0.88859 0.84472 0.85366 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.06 71.98 0.65 -4.62 16 2 C 0.17 7.00 2.77 44.99 0.12 7.13 16 3 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 4 N -0.73 -37.81 5.10 -322.94 -1.65 -39.46 16 5 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 8 N -0.97 -60.17 13.06 21.65 0.28 -59.88 16 9 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 13 C 0.09 3.11 2.59 30.55 0.08 3.19 16 14 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 15 C 0.09 2.48 5.81 86.21 0.50 2.98 16 16 N -0.62 -12.79 3.03 -818.14 -2.48 -15.27 16 17 C 0.51 10.65 7.71 87.66 0.68 11.32 16 18 O -0.59 -18.42 15.45 -3.04 -0.05 -18.47 16 19 C -0.13 -1.10 4.07 29.85 0.12 -0.98 16 20 C -0.11 -1.31 4.26 30.59 0.13 -1.18 16 21 C -0.15 -0.86 5.26 30.60 0.16 -0.70 16 22 C 0.44 5.83 3.16 71.99 0.23 6.06 16 23 F -0.20 -3.48 16.80 44.97 0.76 -2.73 16 24 F -0.19 -2.63 17.32 44.97 0.78 -1.85 16 25 F -0.20 -3.28 16.80 44.97 0.76 -2.53 16 26 C 0.08 0.97 6.55 86.35 0.57 1.53 16 27 C 0.03 0.65 6.98 72.08 0.50 1.16 16 28 O -0.38 -12.14 9.24 -148.98 -1.38 -13.51 16 29 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.99 6.42 -2.38 -0.02 1.97 16 32 H 0.38 21.10 7.58 -92.71 -0.70 20.39 16 33 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 34 H 0.08 2.54 7.08 -2.38 -0.02 2.52 16 35 H 0.09 2.26 6.26 -2.38 -0.01 2.24 16 36 H 0.13 0.44 7.66 -2.38 -0.02 0.42 16 37 H 0.14 0.24 8.02 -2.39 -0.02 0.22 16 38 H 0.07 1.05 7.76 -2.39 -0.02 1.03 16 39 H 0.06 1.04 7.76 -2.39 -0.02 1.02 16 40 H 0.14 0.15 8.14 -2.39 -0.02 0.14 16 41 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.14 0.49 6.05 -2.39 -0.01 0.48 16 44 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -78.93 374.67 4.41 -74.52 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.32 Total: 21.04 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.04 Total: 9.25 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -3.84 Total: -114.61 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.42 Total: -31.98 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 2.29 Total: -7.11 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.93 4.41 -74.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.569 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds