Wall clock time and date at job start Tue Mar 31 2020 20:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46720 * 2 1 4 4 N 1.46498 * 109.46702 * 239.99989 * 2 1 3 5 5 C 1.36941 * 120.00054 * 85.00559 * 4 2 1 6 6 H 1.08001 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00176 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99793 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00125 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47122 * 89.99598 * 9 7 5 11 11 H 1.48495 * 109.46760 * 209.99787 * 9 7 5 12 12 H 1.48499 * 109.46815 * 329.99449 * 9 7 5 13 13 C 1.52997 * 109.46976 * 120.00146 * 2 1 3 14 14 H 1.09002 * 109.50909 * 300.09882 * 13 2 1 15 15 C 1.53295 * 109.51227 * 180.02562 * 13 2 1 16 16 N 1.47148 * 108.38524 * 187.72475 * 15 13 2 17 17 C 1.34780 * 120.97846 * 230.51363 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47482 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47482 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47367 * 60.00057 * 22 21 20 24 24 F 1.39897 * 109.47422 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.47157 * 300.00234 * 22 21 20 26 26 C 1.47149 * 118.03988 * 50.78317 * 16 15 13 27 27 C 1.53711 * 108.15830 * 309.16197 * 26 16 15 28 28 O 1.42961 * 109.15228 * 52.53696 * 27 26 16 29 29 H 1.08997 * 109.47286 * 300.00095 * 1 2 3 30 30 H 1.09003 * 109.47347 * 59.99602 * 1 2 3 31 31 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99959 * 264.99561 * 4 2 1 33 33 H 0.97003 * 120.00311 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.68299 * 67.99540 * 15 13 2 35 35 H 1.09004 * 109.71142 * 307.46311 * 15 13 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 37 37 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 38 38 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 39 39 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 40 40 H 1.09002 * 109.47103 * 300.00247 * 21 20 19 41 41 H 1.09001 * 109.47066 * 60.00169 * 21 20 19 42 42 H 1.08999 * 109.68019 * 68.93392 * 26 16 15 43 43 H 1.08992 * 109.68498 * 189.49193 * 26 16 15 44 44 H 1.09007 * 109.65849 * 292.56744 * 27 26 16 45 45 H 1.09004 * 109.48517 * 172.40113 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.9260 -1.9385 -3.4497 9 14 2.7900 0.2701 -5.1183 10 1 4.1518 0.8561 -5.2032 11 1 2.5802 -0.6617 -6.2554 12 1 1.7791 1.3564 -5.1755 13 6 2.0400 -0.7213 1.2492 14 1 1.6755 -0.2090 2.1396 15 6 3.5729 -0.7213 1.2505 16 7 4.0361 -1.5759 2.3552 17 6 4.9514 -1.1316 3.2392 18 8 5.4063 -0.0126 3.1305 19 6 5.4106 -2.0259 4.3620 20 6 6.4439 -1.2856 5.2135 21 6 6.9096 -2.1931 6.3537 22 6 7.9434 -1.4531 7.2049 23 9 7.3666 -0.2948 7.7368 24 9 8.3697 -2.2832 8.2472 25 9 9.0398 -1.1047 6.4087 26 6 3.4749 -2.9319 2.4629 27 6 1.9428 -2.8222 2.4057 28 8 1.5692 -2.0712 1.2480 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 3.2493 -2.3958 -4.2418 34 1 3.9399 0.2951 1.3938 35 1 3.9414 -1.1144 0.3030 36 1 4.5564 -2.2983 4.9819 37 1 5.8610 -2.9277 3.9473 38 1 7.2980 -1.0134 4.5933 39 1 5.9940 -0.3836 5.6282 40 1 6.0553 -2.4649 6.9738 41 1 7.3595 -3.0954 5.9394 42 1 3.8330 -3.5441 1.6353 43 1 3.7769 -3.3801 3.4094 44 1 1.5776 -2.3178 3.3004 45 1 1.5087 -3.8204 2.3478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675615473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:35 Heat of formation + Delta-G solvation = -231.275166 kcal Electronic energy + Delta-G solvation = -30088.815529 eV Core-core repulsion = 25305.446070 eV Total energy + Delta-G solvation = -4783.369459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.41048 -47.92420 -47.87154 -40.36014 -38.51344 -35.51478 -35.36385 -34.52854 -32.32209 -30.62817 -29.84090 -28.40198 -27.56661 -25.00654 -23.95080 -23.50598 -22.56531 -21.71838 -19.75399 -19.18020 -18.87529 -18.59021 -17.90108 -17.32097 -16.96642 -16.31730 -16.27738 -15.62328 -15.27567 -14.87767 -14.79248 -14.72654 -14.43262 -14.31067 -14.22456 -14.04938 -14.02816 -13.81313 -13.41061 -13.29194 -13.12957 -13.06909 -12.49174 -12.41366 -12.19109 -12.03486 -11.87045 -11.63921 -11.39237 -11.28210 -11.18273 -10.85103 -10.78273 -10.49900 -10.30713 -10.06699 -9.89617 -9.70022 -9.57707 -8.92374 -8.39989 -6.92724 -5.74116 -3.02427 2.40759 2.57632 2.88774 3.45166 3.45819 3.50720 3.51809 3.64517 3.69417 3.94913 4.24946 4.48459 4.59488 4.61046 4.75315 4.77966 4.87679 4.92910 4.97959 5.08176 5.16921 5.30066 5.36856 5.47537 5.57979 5.61077 5.67129 5.76671 5.79757 5.84520 6.00003 6.20595 6.33428 6.40240 6.54256 6.65782 6.77645 7.12697 7.37258 7.45253 7.72475 8.12550 8.44304 9.56663 10.13430 10.50722 11.48173 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.002260 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.834327 B =12386.598386 C =13071.443813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.079 3.921 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.613 5.613 17 C 0.512 3.488 18 O -0.540 6.540 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.166 4.166 22 C 0.452 3.548 23 F -0.183 7.183 24 F -0.187 7.187 25 F -0.182 7.182 26 C 0.070 3.930 27 C 0.048 3.952 28 O -0.358 6.358 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.390 0.610 33 H 0.254 0.746 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -5.055 23.431 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.020 3.980 14 H 0.072 0.928 15 C -0.037 4.037 16 N -0.347 5.347 17 C 0.300 3.700 18 O -0.417 6.417 19 C -0.176 4.176 20 C -0.149 4.149 21 C -0.205 4.205 22 C 0.398 3.602 23 F -0.164 7.164 24 F -0.169 7.169 25 F -0.164 7.164 26 C -0.053 4.053 27 C -0.031 4.031 28 O -0.276 6.276 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.225 0.775 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.834 -4.392 23.088 23.994 hybrid contribution 0.448 0.167 -0.556 0.733 sum 5.281 -4.225 22.532 23.525 Atomic orbital electron populations 1.22353 0.98530 1.01539 0.99640 1.20260 0.92757 0.94658 0.85201 0.92244 1.42377 1.77672 1.10985 1.04896 1.19243 1.36465 0.93818 0.87429 0.91221 1.24714 1.02242 0.95926 0.97954 1.69669 1.50830 1.08609 1.28787 0.86225 0.77763 0.78597 0.83816 1.21791 1.21871 1.20819 1.22914 0.92281 0.83291 0.99563 0.92801 1.22448 0.94894 0.96594 0.89771 1.48255 1.41864 1.15381 1.29162 1.20511 0.78906 0.87778 0.82806 1.90720 1.55972 1.20629 1.74405 1.21610 1.00242 0.99471 0.96270 1.21351 1.00156 0.98153 0.95229 1.22915 0.98461 1.00570 0.98517 1.20592 0.82348 0.78064 0.79217 1.93197 1.84213 1.51622 1.87412 1.93187 1.91169 1.71824 1.60716 1.93204 1.56977 1.92665 1.73533 1.22584 0.95542 0.83942 1.03221 1.22960 0.92899 0.97584 0.89614 1.88115 1.75302 1.23585 1.40606 0.94879 0.92743 0.92564 0.77538 0.93615 0.88603 0.88463 0.88584 0.88424 0.89538 0.89638 0.87145 0.87084 0.89876 0.89361 0.93301 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.35 37.16 0.35 -2.58 16 2 C 0.18 3.56 2.73 -67.93 -0.19 3.37 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -17.47 4.29 -53.43 -0.23 -17.70 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 9 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.08 1.30 2.52 -26.58 -0.07 1.23 16 14 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 15 C 0.08 1.43 5.86 -3.54 -0.02 1.41 16 16 N -0.61 -8.25 3.01 -172.03 -0.52 -8.77 16 17 C 0.51 6.70 7.71 -10.98 -0.08 6.62 16 18 O -0.54 -9.28 15.45 5.56 0.09 -9.20 16 19 C -0.14 -1.03 4.07 -27.88 -0.11 -1.15 16 20 C -0.11 -0.88 4.26 -26.74 -0.11 -0.99 16 21 C -0.17 -0.87 5.26 -26.74 -0.14 -1.01 16 22 C 0.45 3.55 3.16 37.16 0.12 3.67 16 23 F -0.18 -1.71 16.80 2.25 0.04 -1.67 16 24 F -0.19 -1.55 17.32 2.25 0.04 -1.51 16 25 F -0.18 -1.74 16.80 2.25 0.04 -1.70 16 26 C 0.07 0.72 6.57 -3.32 -0.02 0.70 16 27 C 0.05 0.53 7.00 37.53 0.26 0.79 16 28 O -0.36 -5.81 9.23 -35.23 -0.33 -6.14 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 32 H 0.39 10.25 7.21 -40.82 -0.29 9.95 16 33 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.72 7.08 -51.93 -0.37 1.36 16 35 H 0.10 1.96 7.28 -51.93 -0.38 1.59 16 36 H 0.10 0.49 7.67 -51.93 -0.40 0.09 16 37 H 0.10 0.56 8.01 -51.93 -0.42 0.14 16 38 H 0.09 0.83 7.76 -51.93 -0.40 0.43 16 39 H 0.08 0.79 7.76 -51.93 -0.40 0.38 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.55 6.05 -51.93 -0.31 0.23 16 44 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -33.21 376.61 -6.48 -39.69 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.72 Total: 6.05 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.27 Total: 4.98 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.02 Total: -53.51 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.24 Total: -15.33 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.11 Total: -4.88 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.21 -6.48 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.584 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds