Wall clock time and date at job start Tue Mar 31 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 N 1.46496 * 109.47056 * 239.99355 * 2 1 3 5 5 C 1.36942 * 119.99845 * 85.00744 * 4 2 1 6 6 H 1.07997 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00056 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00010 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99758 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46961 * 90.00756 * 9 7 5 11 11 H 1.48507 * 109.46920 * 210.00369 * 9 7 5 12 12 H 1.48491 * 109.47441 * 330.00437 * 9 7 5 13 13 C 1.53007 * 109.46856 * 119.99745 * 2 1 3 14 14 H 1.08993 * 109.51153 * 175.10204 * 13 2 1 15 15 C 1.53299 * 109.51018 * 295.25316 * 13 2 1 16 16 N 1.47227 * 108.40126 * 172.23138 * 15 13 2 17 17 C 1.34777 * 121.02629 * 129.46516 * 16 15 13 18 18 O 1.21277 * 120.00474 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.99596 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47017 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47287 * 179.97438 * 20 19 17 22 22 C 1.52993 * 109.47293 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47442 * 60.00486 * 22 21 20 24 24 F 1.39904 * 109.47329 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.47325 * 299.99988 * 22 21 20 26 26 C 1.47150 * 117.98768 * 309.48190 * 16 15 13 27 27 C 1.53297 * 108.41463 * 50.52570 * 26 16 15 28 28 O 1.42959 * 109.51273 * 55.00009 * 13 2 1 29 29 H 1.09004 * 109.46513 * 60.00608 * 1 2 3 30 30 H 1.08997 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47571 * 300.00308 * 1 2 3 32 32 H 0.97006 * 120.00316 * 264.99851 * 4 2 1 33 33 H 0.97001 * 119.99971 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.68120 * 291.95342 * 15 13 2 35 35 H 1.08998 * 109.67871 * 52.50274 * 15 13 2 36 36 H 1.09001 * 109.47245 * 300.00148 * 19 17 16 37 37 H 1.09002 * 109.46954 * 60.00143 * 19 17 16 38 38 H 1.08992 * 109.47555 * 300.00651 * 20 19 17 39 39 H 1.09002 * 109.46721 * 60.00515 * 20 19 17 40 40 H 1.09001 * 109.47121 * 300.00753 * 21 20 19 41 41 H 1.09002 * 109.46808 * 60.00583 * 21 20 19 42 42 H 1.09002 * 109.68441 * 290.77961 * 26 16 15 43 43 H 1.08999 * 109.68020 * 170.26303 * 26 16 15 44 44 H 1.08996 * 109.51604 * 67.59956 * 27 26 16 45 45 H 1.08994 * 109.51066 * 187.70414 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0076 -2.3757 6 1 1.8921 1.0401 -2.4243 7 6 2.6114 -0.6622 -3.5092 8 7 2.7368 -0.0058 -4.6431 9 14 3.0555 -2.4748 -3.4251 10 1 1.8580 -3.2931 -3.7441 11 1 4.1306 -2.7670 -4.4071 12 1 3.5309 -2.8051 -2.0577 13 6 2.0400 -0.7212 1.2494 14 1 3.1264 -0.7982 1.2073 15 6 1.6294 0.0665 2.4987 16 7 1.9647 -0.7371 3.6859 17 6 2.6675 -0.2081 4.7070 18 8 3.0336 0.9470 4.6571 19 6 2.9984 -1.0521 5.9110 20 6 3.7966 -0.2178 6.9148 21 6 4.1319 -1.0744 8.1374 22 6 4.9296 -0.2399 9.1415 23 9 4.1677 0.8636 9.5402 24 9 5.2357 -1.0230 10.2597 25 9 6.1141 0.2028 8.5432 26 6 1.5096 -2.1360 3.7239 27 6 1.9261 -2.8164 2.4148 28 8 1.4705 -2.0310 1.3105 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6319 -1.1524 33 1 3.0601 -0.4631 -5.4351 34 1 2.1707 1.0121 2.5308 35 1 0.5566 0.2578 2.4760 36 1 2.0757 -1.3975 6.3773 37 1 3.5922 -1.9117 5.6000 38 1 4.7192 0.1273 6.4483 39 1 3.2031 0.6420 7.2258 40 1 3.2090 -1.4191 8.6038 41 1 4.7253 -1.9344 7.8267 42 1 0.4247 -2.1665 3.8245 43 1 1.9711 -2.6493 4.5674 44 1 3.0121 -2.9010 2.3779 45 1 1.4815 -3.8102 2.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675615474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:39 Heat of formation + Delta-G solvation = -226.919429 kcal Electronic energy + Delta-G solvation = -29915.924572 eV Core-core repulsion = 25132.743992 eV Total energy + Delta-G solvation = -4783.180580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.48367 -47.99540 -47.94692 -40.60287 -38.72897 -35.75034 -35.49953 -34.71863 -32.56516 -30.90503 -30.10726 -28.89273 -27.38341 -25.29546 -24.34853 -23.46002 -22.52206 -21.74338 -19.88050 -19.40256 -18.95102 -18.67854 -18.09074 -17.67804 -17.11452 -16.54500 -16.44034 -15.90373 -15.32678 -15.18398 -14.90329 -14.78591 -14.52718 -14.46891 -14.36707 -14.18418 -14.10795 -14.10043 -13.54131 -13.35823 -13.25090 -12.85640 -12.76667 -12.62161 -12.45221 -12.34663 -12.12696 -11.83850 -11.60766 -11.40582 -11.32517 -10.96558 -10.79940 -10.68933 -10.41110 -10.11466 -9.99815 -9.91560 -9.58149 -8.93381 -8.66188 -7.26585 -5.75973 -3.11272 2.31245 2.36056 2.64575 3.36929 3.39200 3.43724 3.46474 3.54529 3.61183 3.77007 4.08526 4.37266 4.45979 4.54231 4.60111 4.60948 4.71895 4.76571 4.85904 4.90395 4.98071 5.01218 5.16509 5.29552 5.45312 5.49570 5.52689 5.53926 5.66673 5.67264 5.68638 5.85431 6.08672 6.20349 6.32082 6.45494 6.72203 7.04221 7.11073 7.26911 7.89679 8.00250 8.43191 9.22297 9.94574 10.15391 11.42228 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021665 B = 0.002100 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.108346 B =13328.026562 C =13415.038116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.243 4.243 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.885 3.115 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C 0.072 3.928 14 H 0.064 0.936 15 C 0.083 3.917 16 N -0.615 5.615 17 C 0.514 3.486 18 O -0.536 6.536 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.166 4.166 22 C 0.452 3.548 23 F -0.183 7.183 24 F -0.187 7.187 25 F -0.182 7.182 26 C 0.072 3.928 27 C 0.044 3.956 28 O -0.362 6.362 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -6.993 29.998 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.387 5.387 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.013 3.987 14 H 0.082 0.918 15 C -0.040 4.040 16 N -0.349 5.349 17 C 0.302 3.698 18 O -0.412 6.412 19 C -0.176 4.176 20 C -0.149 4.149 21 C -0.205 4.205 22 C 0.398 3.602 23 F -0.164 7.164 24 F -0.168 7.168 25 F -0.163 7.163 26 C -0.051 4.051 27 C -0.034 4.034 28 O -0.281 6.281 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.272 -6.227 29.666 30.314 hybrid contribution 0.595 -1.291 0.301 1.453 sum 0.323 -7.518 29.967 30.898 Atomic orbital electron populations 1.22384 0.98114 1.01642 1.00137 1.20175 0.93039 0.94894 0.83894 0.91372 1.42698 1.79510 1.09723 1.06749 1.19077 1.37018 0.95615 0.85572 0.89143 1.24659 1.01414 0.97526 0.95528 1.69703 1.52650 1.35575 1.00224 0.86526 0.78078 0.86884 0.76918 1.21072 1.21894 1.20337 1.23030 0.97639 0.82938 0.95101 0.91791 1.22490 1.02138 0.95872 0.83495 1.48224 1.54959 1.12691 1.19052 1.20558 0.77475 0.87936 0.83819 1.90734 1.52685 1.17855 1.79958 1.21618 1.02264 0.99359 0.94357 1.21358 1.02500 0.98091 0.92999 1.22909 1.02232 0.99565 0.95769 1.20575 0.78822 0.79312 0.81502 1.93200 1.75472 1.56049 1.91709 1.93193 1.93689 1.74415 1.55551 1.93206 1.49550 1.90331 1.83263 1.22503 1.00998 0.81765 0.99853 1.22922 0.99462 0.95249 0.85779 1.88081 1.67938 1.25856 1.46176 0.92359 0.92548 0.94323 0.80093 0.93083 0.87994 0.89924 0.88400 0.88410 0.89501 0.89553 0.87116 0.87079 0.90218 0.89094 0.92877 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.06 37.16 0.34 -2.48 16 2 C 0.19 3.58 2.77 -67.93 -0.19 3.39 16 3 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 4 N -0.74 -17.57 4.91 -53.42 -0.26 -17.83 16 5 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 9 Si 0.89 22.31 27.74 -169.99 -4.71 17.60 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 13 C 0.07 1.12 2.61 -26.57 -0.07 1.05 16 14 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 15 C 0.08 1.08 5.83 -3.49 -0.02 1.06 16 16 N -0.61 -6.61 3.02 -172.21 -0.52 -7.13 16 17 C 0.51 5.60 7.71 -10.98 -0.08 5.52 16 18 O -0.54 -8.06 15.46 5.56 0.09 -7.97 16 19 C -0.14 -0.80 4.07 -27.88 -0.11 -0.92 16 20 C -0.11 -0.73 4.26 -26.73 -0.11 -0.85 16 21 C -0.17 -0.70 5.26 -26.74 -0.14 -0.84 16 22 C 0.45 3.17 3.16 37.15 0.12 3.29 16 23 F -0.18 -1.55 16.80 2.25 0.04 -1.52 16 24 F -0.19 -1.41 17.32 2.25 0.04 -1.37 16 25 F -0.18 -1.59 16.80 2.25 0.04 -1.56 16 26 C 0.07 0.55 6.54 -3.53 -0.02 0.53 16 27 C 0.04 0.44 6.99 37.31 0.26 0.70 16 28 O -0.36 -5.37 9.24 -35.23 -0.33 -5.70 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.00 7.56 -51.93 -0.39 0.61 16 31 H 0.04 0.55 6.41 -51.93 -0.33 0.22 16 32 H 0.37 8.69 5.44 -40.82 -0.22 8.47 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.10 1.46 7.09 -51.93 -0.37 1.09 16 35 H 0.08 1.04 6.26 -51.93 -0.33 0.71 16 36 H 0.10 0.35 8.01 -51.93 -0.42 -0.07 16 37 H 0.10 0.39 7.66 -51.93 -0.40 -0.01 16 38 H 0.09 0.72 7.76 -51.93 -0.40 0.31 16 39 H 0.09 0.68 7.76 -51.93 -0.40 0.28 16 40 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.38 6.05 -51.93 -0.31 0.07 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -34.96 371.59 -6.08 -41.04 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.55 Total: 3.90 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.29 Total: 3.52 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.01 Total: -53.55 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.24 Total: -13.67 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.11 Total: -4.44 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.96 -6.08 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.876 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds