Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 N 1.46496 * 109.47056 * 239.99355 * 2 1 3 5 5 C 1.36942 * 119.99845 * 85.00744 * 4 2 1 6 6 H 1.07997 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00056 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00010 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99758 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46961 * 90.00756 * 9 7 5 11 11 H 1.48507 * 109.46920 * 210.00369 * 9 7 5 12 12 H 1.48491 * 109.47441 * 330.00437 * 9 7 5 13 13 C 1.53007 * 109.46856 * 119.99745 * 2 1 3 14 14 H 1.08993 * 109.51153 * 175.10204 * 13 2 1 15 15 C 1.53299 * 109.51018 * 295.25316 * 13 2 1 16 16 N 1.47227 * 108.40126 * 172.23138 * 15 13 2 17 17 C 1.34777 * 121.02629 * 129.46516 * 16 15 13 18 18 O 1.21277 * 120.00474 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.99596 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47017 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47287 * 179.97438 * 20 19 17 22 22 C 1.52993 * 109.47293 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47442 * 60.00486 * 22 21 20 24 24 F 1.39904 * 109.47329 * 179.97438 * 22 21 20 25 25 F 1.39900 * 109.47325 * 299.99988 * 22 21 20 26 26 C 1.47150 * 117.98768 * 309.48190 * 16 15 13 27 27 C 1.53297 * 108.41463 * 50.52570 * 26 16 15 28 28 O 1.42959 * 109.51273 * 55.00009 * 13 2 1 29 29 H 1.09004 * 109.46513 * 60.00608 * 1 2 3 30 30 H 1.08997 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47571 * 300.00308 * 1 2 3 32 32 H 0.97006 * 120.00316 * 264.99851 * 4 2 1 33 33 H 0.97001 * 119.99971 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.68120 * 291.95342 * 15 13 2 35 35 H 1.08998 * 109.67871 * 52.50274 * 15 13 2 36 36 H 1.09001 * 109.47245 * 300.00148 * 19 17 16 37 37 H 1.09002 * 109.46954 * 60.00143 * 19 17 16 38 38 H 1.08992 * 109.47555 * 300.00651 * 20 19 17 39 39 H 1.09002 * 109.46721 * 60.00515 * 20 19 17 40 40 H 1.09001 * 109.47121 * 300.00753 * 21 20 19 41 41 H 1.09002 * 109.46808 * 60.00583 * 21 20 19 42 42 H 1.09002 * 109.68441 * 290.77961 * 26 16 15 43 43 H 1.08999 * 109.68020 * 170.26303 * 26 16 15 44 44 H 1.08996 * 109.51604 * 67.59956 * 27 26 16 45 45 H 1.08994 * 109.51066 * 187.70414 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0076 -2.3757 6 1 1.8921 1.0401 -2.4243 7 6 2.6114 -0.6622 -3.5092 8 7 2.7368 -0.0058 -4.6431 9 14 3.0555 -2.4748 -3.4251 10 1 1.8580 -3.2931 -3.7441 11 1 4.1306 -2.7670 -4.4071 12 1 3.5309 -2.8051 -2.0577 13 6 2.0400 -0.7212 1.2494 14 1 3.1264 -0.7982 1.2073 15 6 1.6294 0.0665 2.4987 16 7 1.9647 -0.7371 3.6859 17 6 2.6675 -0.2081 4.7070 18 8 3.0336 0.9470 4.6571 19 6 2.9984 -1.0521 5.9110 20 6 3.7966 -0.2178 6.9148 21 6 4.1319 -1.0744 8.1374 22 6 4.9296 -0.2399 9.1415 23 9 4.1677 0.8636 9.5402 24 9 5.2357 -1.0230 10.2597 25 9 6.1141 0.2028 8.5432 26 6 1.5096 -2.1360 3.7239 27 6 1.9261 -2.8164 2.4148 28 8 1.4705 -2.0310 1.3105 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6319 -1.1524 33 1 3.0601 -0.4631 -5.4351 34 1 2.1707 1.0121 2.5308 35 1 0.5566 0.2578 2.4760 36 1 2.0757 -1.3975 6.3773 37 1 3.5922 -1.9117 5.6000 38 1 4.7192 0.1273 6.4483 39 1 3.2031 0.6420 7.2258 40 1 3.2090 -1.4191 8.6038 41 1 4.7253 -1.9344 7.8267 42 1 0.4247 -2.1665 3.8245 43 1 1.9711 -2.6493 4.5674 44 1 3.0121 -2.9010 2.3779 45 1 1.4815 -3.8102 2.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675615474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = -251.477062 kcal Electronic energy + Delta-G solvation = -29916.989471 eV Core-core repulsion = 25132.743992 eV Total energy + Delta-G solvation = -4784.245479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.05020 -48.55948 -48.54993 -41.48978 -39.74837 -37.26292 -35.99417 -35.73752 -34.36405 -32.40173 -30.79732 -30.19351 -28.39906 -26.50713 -25.35295 -24.63464 -23.49017 -22.51619 -21.35337 -20.16333 -19.76893 -19.50836 -19.24205 -18.63413 -17.86454 -17.62110 -17.07572 -16.91917 -16.50716 -16.23412 -16.04645 -15.69599 -15.47008 -15.36010 -15.15245 -14.97010 -14.82371 -14.71089 -14.70666 -14.47709 -14.32117 -14.26236 -13.87870 -13.68129 -13.33487 -13.08786 -13.03738 -12.90681 -12.78558 -12.51905 -12.35162 -12.26795 -12.12146 -11.83337 -11.82147 -11.71577 -11.59122 -11.18430 -10.97259 -10.80692 -9.58421 -9.32482 -8.01911 -5.34942 1.37417 1.41045 1.48411 1.58122 1.75823 1.95955 2.48928 2.76403 2.90824 3.05304 3.14745 3.29925 3.41437 3.50816 3.87314 3.95324 3.95715 3.96936 4.01583 4.11637 4.24763 4.30251 4.37761 4.45428 4.50092 4.58334 4.60324 4.64979 4.68350 4.83819 4.85471 4.98342 5.01638 5.05201 5.19257 5.22517 5.33579 5.58287 5.76834 6.19625 6.25558 6.35033 7.08137 7.11006 7.84213 8.04835 9.19581 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021665 B = 0.002100 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.108346 B =13328.026562 C =13415.038116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.179 3.821 3 H 0.055 0.945 4 N -0.747 5.747 5 C -0.228 4.228 6 H 0.057 0.943 7 C -0.066 4.066 8 N -0.984 5.984 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.255 1.255 13 C 0.090 3.910 14 H 0.046 0.954 15 C 0.090 3.910 16 N -0.616 5.616 17 C 0.505 3.495 18 O -0.589 6.589 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.152 4.152 22 C 0.443 3.557 23 F -0.196 7.196 24 F -0.190 7.190 25 F -0.197 7.197 26 C 0.074 3.926 27 C 0.032 3.968 28 O -0.385 6.385 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.368 0.632 33 H 0.257 0.743 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.051 0.949 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -10.587 33.095 34.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.070 3.930 3 H 0.073 0.927 4 N -0.391 5.391 5 C -0.359 4.359 6 H 0.075 0.925 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.785 3.215 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.180 1.180 13 C 0.031 3.969 14 H 0.064 0.936 15 C -0.034 4.034 16 N -0.350 5.350 17 C 0.296 3.704 18 O -0.469 6.469 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.190 4.190 22 C 0.389 3.611 23 F -0.178 7.178 24 F -0.172 7.172 25 F -0.179 7.179 26 C -0.048 4.048 27 C -0.045 4.045 28 O -0.304 6.304 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.111 0.889 43 H 0.155 0.845 44 H 0.069 0.931 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.064 -9.854 32.839 34.302 hybrid contribution 0.813 -0.086 -0.579 1.001 sum -0.252 -9.940 32.261 33.758 Atomic orbital electron populations 1.22194 0.96453 1.01711 1.00518 1.20396 0.94105 0.94536 0.83946 0.92672 1.42685 1.79859 1.09751 1.06768 1.19042 1.35109 0.94471 0.87301 0.92456 1.25493 1.02442 1.02639 0.95154 1.69886 1.54760 1.37718 1.01122 0.85370 0.77653 0.80739 0.77756 1.20456 1.22312 1.17971 1.22518 0.96237 0.83985 0.94181 0.93611 1.22164 1.02137 0.95124 0.83938 1.48349 1.54825 1.13847 1.17967 1.21558 0.76208 0.87819 0.84837 1.90719 1.54612 1.20527 1.81087 1.21699 1.04294 0.98816 0.91664 1.21271 1.01206 0.98291 0.94168 1.22931 1.03433 0.98906 0.93731 1.21148 0.78601 0.79287 0.82015 1.93174 1.75668 1.56989 1.91924 1.93183 1.93745 1.74307 1.55926 1.93176 1.50643 1.90605 1.83472 1.22760 1.02229 0.79670 1.00115 1.23310 0.99758 0.95980 0.85404 1.88025 1.68184 1.25342 1.48829 0.94915 0.92496 0.90982 0.79899 0.93391 0.90052 0.89130 0.84610 0.85227 0.92029 0.91566 0.84178 0.84502 0.88884 0.84511 0.93057 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.06 71.98 0.65 -4.43 16 2 C 0.18 6.78 2.77 45.00 0.12 6.91 16 3 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 4 N -0.75 -35.50 4.91 -322.93 -1.58 -37.09 16 5 C -0.23 -13.20 10.41 84.03 0.87 -12.32 16 6 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 8 N -0.98 -63.95 13.97 21.65 0.30 -63.64 16 9 Si 0.96 46.42 27.74 68.60 1.90 48.33 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 12 H -0.25 -11.26 6.52 99.48 0.65 -10.62 16 13 C 0.09 2.72 2.61 30.70 0.08 2.80 16 14 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.09 2.27 5.83 86.34 0.50 2.78 16 16 N -0.62 -11.48 3.02 -817.15 -2.47 -13.95 16 17 C 0.50 9.85 7.71 87.66 0.68 10.53 16 18 O -0.59 -17.77 15.46 -3.02 -0.05 -17.82 16 19 C -0.13 -0.91 4.07 29.85 0.12 -0.79 16 20 C -0.11 -1.21 4.26 30.59 0.13 -1.07 16 21 C -0.15 -0.72 5.26 30.59 0.16 -0.56 16 22 C 0.44 5.53 3.16 71.98 0.23 5.76 16 23 F -0.20 -3.20 16.80 44.97 0.76 -2.44 16 24 F -0.19 -2.52 17.32 44.97 0.78 -1.74 16 25 F -0.20 -3.36 16.80 44.97 0.76 -2.60 16 26 C 0.07 0.75 6.54 86.35 0.56 1.31 16 27 C 0.03 0.51 6.99 72.08 0.50 1.01 16 28 O -0.38 -10.43 9.24 -148.98 -1.38 -11.80 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 1.93 7.56 -2.39 -0.02 1.91 16 31 H 0.07 1.95 6.41 -2.39 -0.02 1.93 16 32 H 0.37 17.08 5.44 -92.70 -0.50 16.58 16 33 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 34 H 0.08 2.39 7.09 -2.39 -0.02 2.37 16 35 H 0.09 2.11 6.26 -2.39 -0.01 2.09 16 36 H 0.14 0.05 8.01 -2.39 -0.02 0.03 16 37 H 0.13 0.20 7.66 -2.39 -0.02 0.19 16 38 H 0.06 0.98 7.76 -2.39 -0.02 0.96 16 39 H 0.07 0.99 7.76 -2.39 -0.02 0.97 16 40 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.14 0.16 6.05 -2.39 -0.01 0.14 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.13 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -82.07 371.59 4.56 -77.52 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.45 Total: 16.81 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.09 Total: 8.43 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.75 Total: -114.68 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.42 Total: -29.62 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 2.29 Total: -6.78 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.33 kcal Total: -82.07 4.56 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675615474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.960 kcal (2) G-P(sol) polarization free energy of solvation -82.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds