Wall clock time and date at job start Tue Mar 31 2020 20:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47105 * 2 1 4 4 N 1.46499 * 109.47141 * 120.00288 * 2 1 3 5 5 C 1.36936 * 120.00082 * 274.99424 * 4 2 1 6 6 H 1.08001 * 119.99949 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00044 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99931 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99884 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47428 * 89.99751 * 9 7 5 11 11 H 1.48506 * 109.47020 * 209.99696 * 9 7 5 12 12 H 1.48502 * 109.47008 * 329.99334 * 9 7 5 13 13 C 1.53006 * 109.46965 * 240.00390 * 2 1 3 14 14 H 1.08996 * 109.70193 * 57.84035 * 13 2 1 15 15 C 1.53191 * 109.58199 * 297.48207 * 13 2 1 16 16 C 1.53040 * 109.30829 * 185.57767 * 15 13 2 17 17 C 1.53040 * 109.53747 * 61.36760 * 16 15 13 18 18 C 1.53187 * 109.31220 * 298.63032 * 17 16 15 19 19 N 1.46925 * 108.77423 * 54.63885 * 18 17 16 20 20 C 1.34776 * 120.63102 * 126.36887 * 19 18 17 21 21 O 1.21573 * 119.99701 * 173.85675 * 20 19 18 22 22 C 1.47691 * 120.00397 * 353.85328 * 20 19 18 23 23 C 1.39665 * 120.15366 * 325.45423 * 22 20 19 24 24 C 1.38059 * 119.85104 * 179.97438 * 23 22 20 25 25 F 1.35106 * 119.91755 * 180.02562 * 24 23 22 26 26 C 1.38656 * 120.16955 * 359.97438 * 24 23 22 27 27 C 1.38189 * 120.31198 * 359.97438 * 26 24 23 28 28 C 1.38308 * 120.14715 * 359.78083 * 27 26 24 29 29 F 1.35103 * 120.08660 * 180.26231 * 28 27 26 30 30 H 1.08992 * 109.46831 * 185.20952 * 1 2 3 31 31 H 1.09003 * 109.46804 * 305.20879 * 1 2 3 32 32 H 1.08999 * 109.47200 * 65.20590 * 1 2 3 33 33 H 0.96995 * 120.00140 * 95.00304 * 4 2 1 34 34 H 0.97002 * 120.00171 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.50121 * 305.52690 * 15 13 2 36 36 H 1.08998 * 109.49885 * 65.63111 * 15 13 2 37 37 H 1.09004 * 109.46277 * 181.38728 * 16 15 13 38 38 H 1.09003 * 109.46356 * 301.34848 * 16 15 13 39 39 H 1.09010 * 109.49855 * 178.68505 * 17 16 15 40 40 H 1.08995 * 109.49961 * 58.58896 * 17 16 15 41 41 H 1.08997 * 109.59325 * 294.84839 * 18 17 16 42 42 H 1.09008 * 109.59117 * 174.42181 * 18 17 16 43 43 H 1.08001 * 120.06783 * 359.97438 * 23 22 20 44 44 H 1.07998 * 119.84738 * 180.02562 * 26 24 23 45 45 H 1.07997 * 119.92435 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6115 -0.6622 3.5092 8 7 2.7368 -0.0057 4.6431 9 14 3.0556 -2.4746 3.4252 10 1 4.4884 -2.6170 3.0618 11 1 2.8155 -3.1049 4.7483 12 1 2.2158 -3.1430 2.3989 13 6 2.0400 -0.7212 -1.2494 14 1 1.6475 -0.2331 -2.1414 15 6 1.5832 -2.1831 -1.2207 16 6 2.2107 -2.9326 -2.3983 17 6 3.7355 -2.9004 -2.2713 18 6 4.2167 -1.4466 -2.3118 19 7 3.5086 -0.6850 -1.2739 20 6 4.1932 0.0327 -0.3615 21 8 3.5975 0.7467 0.4217 22 6 5.6671 -0.0480 -0.3130 23 6 6.3139 -1.2506 -0.6065 24 6 7.6920 -1.3188 -0.5597 25 9 8.3191 -2.4813 -0.8439 26 6 8.4343 -0.1972 -0.2230 27 6 7.8015 0.9965 0.0677 28 6 6.4218 1.0808 0.0199 29 9 5.8047 2.2498 0.2991 30 1 -0.3633 -1.0234 0.0933 31 1 -0.3633 0.5925 0.8397 32 1 -0.3633 0.4310 -0.9329 33 1 2.2491 -1.6318 1.1525 34 1 3.0601 -0.4630 5.4351 35 1 1.8995 -2.6449 -0.2855 36 1 0.4969 -2.2265 -1.2993 37 1 1.8678 -3.9672 -2.3946 38 1 1.9140 -2.4552 -3.3322 39 1 4.1812 -3.4542 -3.0977 40 1 4.0316 -3.3555 -1.3262 41 1 4.0017 -1.0176 -3.2905 42 1 5.2897 -1.4114 -2.1229 43 1 5.7372 -2.1250 -0.8693 44 1 9.5121 -0.2563 -0.1884 45 1 8.3858 1.8664 0.3288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689902789.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:04 Heat of formation + Delta-G solvation = -50.722531 kcal Electronic energy + Delta-G solvation = -31939.838093 eV Core-core repulsion = 27595.067209 eV Total energy + Delta-G solvation = -4344.770884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.01864 -50.00695 -41.90487 -39.68545 -38.22922 -37.03444 -34.38978 -33.83616 -32.51673 -31.63337 -31.11572 -29.95287 -26.86328 -25.64265 -24.87511 -24.58673 -23.78350 -22.10822 -21.58849 -20.24827 -19.63632 -18.74296 -18.50316 -18.25743 -17.47886 -16.97402 -16.87792 -16.45921 -16.41452 -16.00267 -15.84193 -15.69394 -15.43919 -15.35762 -14.96742 -14.77297 -14.49981 -14.30860 -14.23425 -13.97723 -13.73434 -13.53490 -13.36349 -13.29446 -12.95168 -12.85979 -12.68803 -12.52399 -12.29324 -12.05855 -11.92300 -11.79492 -11.67808 -11.49047 -11.30037 -10.94252 -10.34038 -9.83841 -9.70814 -9.50532 -8.97463 -7.88227 -5.13730 -0.44583 -0.18683 1.24451 1.30170 1.37166 1.75364 2.00946 2.36387 2.51649 3.01018 3.05953 3.33020 3.43510 3.52417 3.73912 3.75147 3.87008 3.92100 3.96725 4.00973 4.14591 4.28971 4.35244 4.44449 4.58392 4.65866 4.69694 4.78384 4.80049 4.81780 4.82407 4.91673 4.93656 4.97847 5.04013 5.10303 5.20989 5.23442 5.41968 5.47439 5.51438 5.60092 5.84123 5.95945 6.34107 6.50593 7.22149 7.41521 7.99152 8.19413 9.36648 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.006338 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.254039 B = 4416.832961 C = 5374.526125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.060 0.940 4 N -0.728 5.728 5 C -0.149 4.149 6 H 0.040 0.960 7 C -0.086 4.086 8 N -1.000 6.000 9 Si 0.941 3.059 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.255 1.255 13 C 0.149 3.851 14 H 0.099 0.901 15 C -0.131 4.131 16 C -0.110 4.110 17 C -0.137 4.137 18 C 0.078 3.922 19 N -0.605 5.605 20 C 0.529 3.471 21 O -0.493 6.493 22 C -0.149 4.149 23 C -0.111 4.111 24 C 0.081 3.919 25 F -0.130 7.130 26 C -0.090 4.090 27 C -0.121 4.121 28 C 0.111 3.889 29 F -0.138 7.138 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.357 0.643 34 H 0.248 0.752 35 H 0.037 0.963 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.166 0.834 44 H 0.189 0.811 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 -6.561 -22.789 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.078 0.922 4 N -0.372 5.372 5 C -0.281 4.281 6 H 0.058 0.942 7 C -0.274 4.274 8 N -0.655 5.655 9 Si 0.771 3.229 10 H -0.217 1.217 11 H -0.227 1.227 12 H -0.179 1.179 13 C 0.045 3.955 14 H 0.117 0.883 15 C -0.170 4.170 16 C -0.147 4.147 17 C -0.175 4.175 18 C -0.043 4.043 19 N -0.341 5.341 20 C 0.316 3.684 21 O -0.366 6.366 22 C -0.154 4.154 23 C -0.130 4.130 24 C 0.062 3.938 25 F -0.108 7.108 26 C -0.109 4.109 27 C -0.140 4.140 28 C 0.091 3.909 29 F -0.117 7.117 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.191 0.809 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.183 0.817 44 H 0.207 0.793 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.642 -5.999 -22.270 24.998 hybrid contribution 0.034 -0.702 1.150 1.348 sum 9.675 -6.701 -21.120 24.178 Atomic orbital electron populations 1.22375 0.97634 1.01203 1.00620 1.20813 0.91729 0.97127 0.84740 0.92202 1.42686 1.79348 1.08224 1.06931 1.18739 1.29921 0.92976 0.86478 0.94208 1.25266 1.04958 1.01487 0.95727 1.69889 1.57688 1.36879 1.01035 0.85576 0.78010 0.82661 0.76646 1.21746 1.22690 1.17949 1.21618 0.78567 0.96973 0.98300 0.88294 1.22003 1.01770 0.94177 0.99036 1.21493 0.94525 1.00925 0.97797 1.21989 0.97081 0.95446 1.02977 1.22592 0.98492 0.91979 0.91236 1.47888 1.06527 1.49051 1.30604 1.18343 0.86530 0.82094 0.81450 1.91076 1.68006 1.38634 1.38921 1.20122 0.94538 0.94521 1.06178 1.21477 0.93845 0.97968 0.99666 1.17548 0.89914 0.83111 1.03232 1.91542 1.82126 1.46005 1.91133 1.21512 1.02997 0.89529 0.96817 1.21309 0.90552 1.01064 1.01048 1.18194 0.91946 0.81140 0.99662 1.91542 1.83779 1.45660 1.90697 0.92711 0.95603 0.90731 0.80914 0.94341 0.94380 0.89353 0.90497 0.89623 0.87432 0.93250 0.89070 0.87932 0.81662 0.79335 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 9.06 71.98 0.65 -4.96 16 2 C 0.16 6.64 1.89 44.99 0.08 6.72 16 3 H 0.06 2.89 5.88 -6.19 -0.04 2.85 16 4 N -0.73 -36.15 3.27 -322.92 -1.06 -37.20 16 5 C -0.15 -9.25 8.57 84.03 0.72 -8.53 16 6 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 7 C -0.09 -5.56 5.50 84.86 0.47 -5.09 16 8 N -1.00 -70.01 13.97 21.65 0.30 -69.71 16 9 Si 0.94 49.85 27.74 68.60 1.90 51.75 16 10 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 11 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 12 H -0.25 -12.10 6.52 99.48 0.65 -11.45 16 13 C 0.15 4.38 2.75 44.98 0.12 4.50 16 14 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.13 -3.30 4.81 30.67 0.15 -3.15 16 16 C -0.11 -1.83 5.88 30.62 0.18 -1.65 16 17 C -0.14 -2.24 5.76 30.67 0.18 -2.06 16 18 C 0.08 1.51 5.53 86.36 0.48 1.99 16 19 N -0.61 -18.07 2.96 -798.58 -2.37 -20.44 16 20 C 0.53 20.57 6.70 86.74 0.58 21.15 16 21 O -0.49 -24.69 9.23 -3.95 -0.04 -24.73 16 22 C -0.15 -4.95 5.42 -20.06 -0.11 -5.05 16 23 C -0.11 -2.86 7.36 22.57 0.17 -2.69 16 24 C 0.08 1.75 7.29 22.33 0.16 1.91 16 25 F -0.13 -2.63 17.26 44.97 0.78 -1.86 16 26 C -0.09 -1.59 10.01 22.36 0.22 -1.36 16 27 C -0.12 -2.64 10.01 22.27 0.22 -2.42 16 28 C 0.11 3.58 7.24 22.67 0.16 3.74 16 29 F -0.14 -5.44 16.10 44.97 0.72 -4.71 16 30 H 0.05 1.82 6.91 -2.39 -0.02 1.80 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.36 17.20 3.71 -92.71 -0.34 16.85 16 34 H 0.25 16.63 8.31 -92.71 -0.77 15.86 16 35 H 0.04 1.21 6.22 -2.39 -0.01 1.19 16 36 H 0.09 2.00 6.93 -2.39 -0.02 1.99 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.05 1.00 7.60 -2.39 -0.02 0.98 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.92 3.59 -2.38 -0.01 1.91 16 43 H 0.17 3.82 5.10 -2.91 -0.01 3.81 16 44 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -85.82 350.47 5.30 -80.51 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.62 Total: 23.34 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 4.44 Total: 3.04 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -3.12 Total: -127.35 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 1.50 Total: -6.57 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 1.90 Total: 51.75 kcal Total: -85.82 5.30 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689902789.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.791 kcal (2) G-P(sol) polarization free energy of solvation -85.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds