Wall clock time and date at job start Tue Mar 31 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47043 * 2 1 4 4 C 1.50701 * 109.46790 * 240.00600 * 2 1 3 5 5 O 1.21285 * 119.99747 * 239.99591 * 4 2 1 6 6 N 1.34775 * 120.00395 * 60.00170 * 4 2 1 7 7 C 1.46500 * 119.99888 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46850 * 180.02562 * 7 6 4 9 9 H 1.09005 * 112.85018 * 316.18523 * 8 7 6 10 10 C 1.53950 * 113.67413 * 87.43315 * 8 7 6 11 11 C 1.53777 * 87.02268 * 139.93201 * 10 8 7 12 12 H 1.08991 * 113.61598 * 89.23095 * 11 10 8 13 13 N 1.46506 * 113.61805 * 220.05338 * 11 10 8 14 14 C 1.36929 * 119.99807 * 254.13523 * 13 11 10 15 15 H 1.08004 * 120.00341 * 0.27647 * 14 13 11 16 16 C 1.38815 * 120.00031 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46793 * 120.00365 * 18 16 14 21 21 H 1.48500 * 109.47000 * 240.00457 * 18 16 14 22 22 C 1.53781 * 113.61455 * 184.99608 * 8 7 6 23 23 C 1.50693 * 109.47220 * 120.00060 * 2 1 3 24 24 C 1.38230 * 119.98444 * 59.73114 * 23 2 1 25 25 C 1.38189 * 120.04893 * 179.72592 * 24 23 2 26 26 C 1.38495 * 120.02797 * 0.54271 * 25 24 23 27 27 F 1.35092 * 120.01718 * 179.74896 * 26 25 24 28 28 C 1.38403 * 119.97150 * 359.72444 * 26 25 24 29 29 C 1.38443 * 119.94950 * 0.02562 * 28 26 25 30 30 F 1.35095 * 120.01406 * 179.97438 * 29 28 26 31 31 H 1.09002 * 109.47368 * 299.99535 * 1 2 3 32 32 H 1.09003 * 109.47597 * 59.99426 * 1 2 3 33 33 H 1.09000 * 109.47505 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99842 * 359.97438 * 6 4 2 35 35 H 1.08990 * 109.47887 * 59.99498 * 7 6 4 36 36 H 1.09006 * 109.46538 * 299.98814 * 7 6 4 37 37 H 1.09005 * 113.60913 * 25.41142 * 10 8 7 38 38 H 1.08995 * 113.67234 * 254.46622 * 10 8 7 39 39 H 0.96999 * 120.00076 * 74.13587 * 13 11 10 40 40 H 0.97000 * 120.00284 * 179.97438 * 17 16 14 41 41 H 1.09002 * 113.61683 * 105.46525 * 22 8 7 42 42 H 1.09002 * 113.61578 * 334.56802 * 22 8 7 43 43 H 1.08000 * 119.97794 * 359.97111 * 24 23 2 44 44 H 1.08006 * 119.98641 * 180.24765 * 25 24 23 45 45 H 1.07999 * 120.02493 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7066 -0.2497 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 6 1.6851 -0.2188 -4.9000 9 1 0.6347 0.0633 -4.8272 10 6 2.6003 0.9272 -5.3681 11 6 2.3205 0.4564 -6.8050 12 1 1.4446 0.9238 -7.2548 13 7 3.4978 0.4979 -7.6760 14 6 3.6101 1.4745 -8.6292 15 1 2.8330 2.2169 -8.7360 16 6 4.7259 1.5142 -9.4542 17 7 5.6756 0.6128 -9.3204 18 14 4.8794 2.8470 -10.7541 19 1 3.6875 3.7310 -10.6999 20 1 6.1024 3.6495 -10.4981 21 1 4.9707 2.2202 -12.0972 22 6 2.0408 -0.9352 -6.2135 23 6 2.0323 -0.7104 1.2304 24 6 1.6936 -2.0322 1.4516 25 6 2.1581 -2.6866 2.5766 26 6 2.9545 -2.0154 3.4895 27 9 3.4044 -2.6539 4.5918 28 6 3.2897 -0.6903 3.2718 29 6 2.8280 -0.0372 2.1418 30 9 3.1540 1.2563 1.9283 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1487 0.5387 -2.5436 35 1 1.8309 -1.9681 -3.6508 36 1 3.2845 -0.9409 -3.6510 37 1 3.6403 0.8074 -5.0641 38 1 2.2060 1.9194 -5.1491 39 1 4.1977 -0.1664 -7.5775 40 1 6.4550 0.6403 -9.8971 41 1 1.1952 -1.4443 -6.6760 42 1 2.9273 -1.5652 -6.1410 43 1 1.0687 -2.5550 0.7427 44 1 1.8962 -3.7205 2.7464 45 1 3.9110 -0.1662 3.9829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691478615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:35 Heat of formation + Delta-G solvation = -79.627726 kcal Electronic energy + Delta-G solvation = -28077.011205 eV Core-core repulsion = 23730.986897 eV Total energy + Delta-G solvation = -4346.024308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.39173 -49.35377 -40.51261 -39.06540 -38.32798 -34.77607 -34.50324 -33.27320 -31.20272 -30.36084 -29.54182 -27.40279 -25.15349 -25.08036 -23.92225 -23.51883 -22.43984 -21.09262 -20.27313 -19.05964 -18.63185 -17.84520 -17.18501 -17.02313 -16.55896 -16.28571 -16.08183 -15.66045 -15.59183 -15.47845 -14.85858 -14.81837 -14.65615 -14.35562 -14.05447 -13.68322 -13.49564 -13.25959 -13.07229 -12.96636 -12.74054 -12.36865 -12.14474 -11.95139 -11.85345 -11.66553 -11.58089 -11.39728 -11.26051 -10.86941 -10.54961 -10.28599 -10.13093 -9.88344 -9.84794 -9.51906 -9.42739 -9.09141 -8.99733 -8.89180 -6.98267 -5.80161 -3.09111 0.53162 0.65115 2.47275 2.83560 3.18452 3.41079 3.46540 3.47769 3.49011 3.92715 4.05642 4.15713 4.41385 4.54701 4.56577 4.67051 4.72570 4.85309 4.92923 4.96812 5.16343 5.19169 5.31258 5.40816 5.44352 5.45380 5.46927 5.51796 5.60712 5.69620 5.77975 5.81535 5.85843 5.90177 6.06657 6.21156 6.27484 6.32772 6.36250 6.40727 6.56358 6.79435 7.08711 7.36938 7.67668 8.07285 8.38315 9.49454 10.07710 10.41737 11.42248 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.001822 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.357396 B =15361.395843 C =15579.681884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.111 0.889 4 C 0.516 3.484 5 O -0.534 6.534 6 N -0.721 5.721 7 C 0.132 3.868 8 C -0.127 4.127 9 H 0.088 0.912 10 C -0.161 4.161 11 C 0.165 3.835 12 H 0.074 0.926 13 N -0.713 5.713 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.142 4.142 23 C -0.109 4.109 24 C -0.028 4.028 25 C -0.163 4.163 26 C 0.129 3.871 27 F -0.133 7.133 28 C -0.194 4.194 29 C 0.137 3.863 30 F -0.129 7.129 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 -3.683 26.539 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 H 0.129 0.871 4 C 0.301 3.699 5 O -0.410 6.410 6 N -0.372 5.372 7 C 0.009 3.991 8 C -0.146 4.146 9 H 0.106 0.894 10 C -0.202 4.202 11 C 0.053 3.947 12 H 0.092 0.908 13 N -0.351 5.351 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.181 4.181 23 C -0.110 4.110 24 C -0.046 4.046 25 C -0.182 4.182 26 C 0.109 3.891 27 F -0.111 7.111 28 C -0.214 4.214 29 C 0.117 3.883 30 F -0.107 7.107 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.751 -4.227 26.462 29.676 hybrid contribution 0.457 1.061 -0.515 1.265 sum -12.294 -3.166 25.947 28.886 Atomic orbital electron populations 1.21809 0.91295 1.03305 1.03373 1.20225 0.98218 1.00843 0.90315 0.87063 1.20299 0.80473 0.84743 0.84430 1.90737 1.37397 1.26224 1.86654 1.46019 1.53502 1.32084 1.05617 1.21459 0.99513 0.95694 0.82434 1.22671 0.99696 0.99087 0.93181 0.89376 1.23981 0.98890 0.96217 1.01127 1.21517 0.91476 0.92917 0.88748 0.90759 1.42420 1.19981 1.34398 1.38321 1.19340 1.03427 1.05507 1.09213 0.91042 1.24782 0.97100 0.99017 1.00110 1.69669 1.10259 1.36383 1.41651 0.86117 0.77406 0.81119 0.81533 1.20535 1.21856 1.21840 1.23425 1.01205 0.99074 0.94422 1.19402 1.00366 0.95357 0.95881 1.20674 0.96559 0.92270 0.95089 1.21192 1.00403 1.01593 0.94997 1.17302 0.96844 0.90240 0.84673 1.91530 1.87346 1.81525 1.50703 1.20954 1.05953 0.94683 0.99769 1.17068 0.97265 0.79133 0.94797 1.91522 1.90841 1.33760 1.94579 0.91022 0.91138 0.91564 0.76519 0.91686 0.91182 0.90352 0.92765 0.78069 0.93483 0.91974 0.90101 0.84064 0.83911 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.90 37.16 0.33 -0.43 16 2 C -0.07 -0.61 2.88 -92.93 -0.27 -0.88 16 3 H 0.11 0.85 7.12 -51.93 -0.37 0.48 16 4 C 0.52 5.77 7.03 -10.99 -0.08 5.69 16 5 O -0.53 -8.02 15.13 5.55 0.08 -7.94 16 6 N -0.72 -7.24 5.45 -60.29 -0.33 -7.57 16 7 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 8 C -0.13 -1.59 3.75 -89.72 -0.34 -1.92 16 9 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 10 C -0.16 -2.57 7.45 -25.83 -0.19 -2.76 16 11 C 0.17 3.11 4.47 -67.12 -0.30 2.81 16 12 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 13 N -0.71 -17.59 5.41 -52.64 -0.28 -17.87 16 14 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 18 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C -0.14 -2.16 7.39 -25.92 -0.19 -2.36 16 23 C -0.11 -1.00 4.40 -104.55 -0.46 -1.46 16 24 C -0.03 -0.24 7.93 -39.60 -0.31 -0.55 16 25 C -0.16 -1.31 10.02 -39.50 -0.40 -1.71 16 26 C 0.13 1.14 7.30 -39.43 -0.29 0.86 16 27 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 28 C -0.19 -1.70 10.01 -39.44 -0.39 -2.10 16 29 C 0.14 1.31 7.24 -39.43 -0.29 1.03 16 30 F -0.13 -1.29 16.19 2.25 0.04 -1.25 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.30 7.56 -51.93 -0.39 -0.10 16 33 H 0.07 0.35 7.37 -51.93 -0.38 -0.03 16 34 H 0.40 3.00 7.89 -40.82 -0.32 2.68 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.01 7.85 -51.93 -0.41 0.61 16 37 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.39 10.16 7.91 -40.82 -0.32 9.83 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 43 H 0.14 1.07 7.51 -52.49 -0.39 0.67 16 44 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -32.47 383.40 -8.77 -41.23 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.35 Total: 8.50 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.44 Total: -9.52 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.11 Total: -52.80 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.94 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.47 -8.77 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691478615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.394 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds