Wall clock time and date at job start Tue Mar 31 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47043 * 2 1 4 4 C 1.50701 * 109.46790 * 240.00600 * 2 1 3 5 5 O 1.21285 * 119.99747 * 239.99591 * 4 2 1 6 6 N 1.34775 * 120.00395 * 60.00170 * 4 2 1 7 7 C 1.46500 * 119.99888 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46850 * 180.02562 * 7 6 4 9 9 H 1.09005 * 112.85018 * 316.18523 * 8 7 6 10 10 C 1.53950 * 113.67413 * 87.43315 * 8 7 6 11 11 C 1.53777 * 87.02268 * 139.93201 * 10 8 7 12 12 H 1.08991 * 113.61598 * 89.23095 * 11 10 8 13 13 N 1.46506 * 113.61805 * 220.05338 * 11 10 8 14 14 C 1.36929 * 119.99807 * 254.13523 * 13 11 10 15 15 H 1.08004 * 120.00341 * 0.27647 * 14 13 11 16 16 C 1.38815 * 120.00031 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46793 * 120.00365 * 18 16 14 21 21 H 1.48500 * 109.47000 * 240.00457 * 18 16 14 22 22 C 1.53781 * 113.61455 * 184.99608 * 8 7 6 23 23 C 1.50693 * 109.47220 * 120.00060 * 2 1 3 24 24 C 1.38230 * 119.98444 * 59.73114 * 23 2 1 25 25 C 1.38189 * 120.04893 * 179.72592 * 24 23 2 26 26 C 1.38495 * 120.02797 * 0.54271 * 25 24 23 27 27 F 1.35092 * 120.01718 * 179.74896 * 26 25 24 28 28 C 1.38403 * 119.97150 * 359.72444 * 26 25 24 29 29 C 1.38443 * 119.94950 * 0.02562 * 28 26 25 30 30 F 1.35095 * 120.01406 * 179.97438 * 29 28 26 31 31 H 1.09002 * 109.47368 * 299.99535 * 1 2 3 32 32 H 1.09003 * 109.47597 * 59.99426 * 1 2 3 33 33 H 1.09000 * 109.47505 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99842 * 359.97438 * 6 4 2 35 35 H 1.08990 * 109.47887 * 59.99498 * 7 6 4 36 36 H 1.09006 * 109.46538 * 299.98814 * 7 6 4 37 37 H 1.09005 * 113.60913 * 25.41142 * 10 8 7 38 38 H 1.08995 * 113.67234 * 254.46622 * 10 8 7 39 39 H 0.96999 * 120.00076 * 74.13587 * 13 11 10 40 40 H 0.97000 * 120.00284 * 179.97438 * 17 16 14 41 41 H 1.09002 * 113.61683 * 105.46525 * 22 8 7 42 42 H 1.09002 * 113.61578 * 334.56802 * 22 8 7 43 43 H 1.08000 * 119.97794 * 359.97111 * 24 23 2 44 44 H 1.08006 * 119.98641 * 180.24765 * 25 24 23 45 45 H 1.07999 * 120.02493 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7066 -0.2497 -2.4546 7 6 2.1945 -0.9407 -3.6508 8 6 1.6851 -0.2188 -4.9000 9 1 0.6347 0.0633 -4.8272 10 6 2.6003 0.9272 -5.3681 11 6 2.3205 0.4564 -6.8050 12 1 1.4446 0.9238 -7.2548 13 7 3.4978 0.4979 -7.6760 14 6 3.6101 1.4745 -8.6292 15 1 2.8330 2.2169 -8.7360 16 6 4.7259 1.5142 -9.4542 17 7 5.6756 0.6128 -9.3204 18 14 4.8794 2.8470 -10.7541 19 1 3.6875 3.7310 -10.6999 20 1 6.1024 3.6495 -10.4981 21 1 4.9707 2.2202 -12.0972 22 6 2.0408 -0.9352 -6.2135 23 6 2.0323 -0.7104 1.2304 24 6 1.6936 -2.0322 1.4516 25 6 2.1581 -2.6866 2.5766 26 6 2.9545 -2.0154 3.4895 27 9 3.4044 -2.6539 4.5918 28 6 3.2897 -0.6903 3.2718 29 6 2.8280 -0.0372 2.1418 30 9 3.1540 1.2563 1.9283 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1487 0.5387 -2.5436 35 1 1.8309 -1.9681 -3.6508 36 1 3.2845 -0.9409 -3.6510 37 1 3.6403 0.8074 -5.0641 38 1 2.2060 1.9194 -5.1491 39 1 4.1977 -0.1664 -7.5775 40 1 6.4550 0.6403 -9.8971 41 1 1.1952 -1.4443 -6.6760 42 1 2.9273 -1.5652 -6.1410 43 1 1.0687 -2.5550 0.7427 44 1 1.8962 -3.7205 2.7464 45 1 3.9110 -0.1662 3.9829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691478615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:35 Heat of formation + Delta-G solvation = -99.177488 kcal Electronic energy + Delta-G solvation = -28077.858946 eV Core-core repulsion = 23730.986897 eV Total energy + Delta-G solvation = -4346.872049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.11787 -50.04890 -41.34408 -40.09513 -39.34435 -36.04206 -35.29703 -34.84431 -32.18608 -31.83950 -30.27728 -28.54475 -26.44677 -26.04139 -25.47069 -24.21977 -23.29110 -22.34223 -21.20982 -20.36000 -19.32548 -19.05556 -18.55116 -17.94005 -17.39050 -17.01252 -16.86750 -16.65123 -16.45618 -16.36055 -16.33120 -15.82969 -15.53003 -15.45622 -15.10644 -14.96990 -14.72409 -14.43844 -13.83062 -13.76262 -13.41688 -13.34953 -13.22222 -13.03284 -12.98443 -12.90675 -12.79063 -12.64073 -12.26939 -12.17438 -12.13520 -12.05111 -11.56769 -11.53727 -11.08152 -10.85116 -10.73567 -10.09307 -10.03982 -9.67928 -8.97073 -7.94555 -5.22681 -0.14436 -0.00833 1.47364 1.48033 1.58063 1.61429 2.07508 2.43816 2.56844 2.80332 3.26918 3.37588 3.41079 3.51471 3.69886 3.77215 3.79216 3.89969 3.98235 4.09729 4.14188 4.27323 4.28302 4.36828 4.44747 4.58338 4.67768 4.76780 4.80213 4.85537 4.87492 4.92361 4.99397 5.00587 5.03317 5.08137 5.20245 5.24280 5.29122 5.38629 5.45277 5.54423 5.71213 5.75774 6.28072 6.56895 7.24775 7.33337 8.12397 8.33466 9.29213 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.001822 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.357396 B =15361.395843 C =15579.681884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 H 0.118 0.882 4 C 0.514 3.486 5 O -0.576 6.576 6 N -0.710 5.710 7 C 0.139 3.861 8 C -0.093 4.093 9 H 0.125 0.875 10 C -0.155 4.155 11 C 0.142 3.858 12 H 0.081 0.919 13 N -0.731 5.731 14 C -0.239 4.239 15 H 0.080 0.920 16 C -0.083 4.083 17 N -0.973 5.973 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.297 1.297 21 H -0.295 1.295 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.034 4.034 25 C -0.160 4.160 26 C 0.117 3.883 27 F -0.137 7.137 28 C -0.196 4.196 29 C 0.121 3.879 30 F -0.135 7.135 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.416 0.584 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.961 -2.925 27.388 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 H 0.136 0.864 4 C 0.301 3.699 5 O -0.456 6.456 6 N -0.362 5.362 7 C 0.015 3.985 8 C -0.112 4.112 9 H 0.143 0.857 10 C -0.195 4.195 11 C 0.032 3.968 12 H 0.099 0.901 13 N -0.369 5.369 14 C -0.371 4.371 15 H 0.098 0.902 16 C -0.274 4.274 17 N -0.624 5.624 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.224 1.224 21 H -0.222 1.222 22 C -0.176 4.176 23 C -0.118 4.118 24 C -0.052 4.052 25 C -0.178 4.178 26 C 0.098 3.902 27 F -0.115 7.115 28 C -0.216 4.216 29 C 0.101 3.899 30 F -0.113 7.113 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.169 0.831 44 H 0.180 0.820 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.496 -3.427 27.346 31.618 hybrid contribution 1.238 0.794 -0.713 1.635 sum -14.258 -2.633 26.633 30.324 Atomic orbital electron populations 1.21848 0.88781 1.03975 1.04818 1.20244 1.00158 1.00331 0.88186 0.86440 1.20820 0.79588 0.84201 0.85298 1.90721 1.39304 1.28267 1.87274 1.45866 1.53258 1.32326 1.04715 1.21209 0.97917 0.96179 0.83195 1.22500 1.00733 0.96171 0.91789 0.85674 1.23754 0.98471 0.98359 0.98947 1.21985 0.89784 0.95913 0.89097 0.90103 1.42658 1.21488 1.33652 1.39058 1.19774 1.02988 1.05518 1.08821 0.90193 1.25613 0.97329 1.01599 1.02886 1.69831 1.10926 1.38615 1.43013 0.85070 0.77525 0.78615 0.78558 1.18665 1.22402 1.22219 1.23306 1.01316 0.97184 0.95772 1.19622 1.00231 0.95794 0.96150 1.20842 0.96786 0.92161 0.95372 1.21443 0.99499 1.02469 0.94414 1.17432 0.97438 0.90434 0.84907 1.91519 1.87485 1.81582 1.50942 1.21115 1.05813 0.94832 0.99828 1.17211 0.98056 0.79143 0.95479 1.91501 1.91012 1.34115 1.94673 0.89902 0.89406 0.91301 0.74637 0.91307 0.94003 0.92945 0.91320 0.79730 0.94166 0.90143 0.91689 0.83120 0.81980 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 71.98 0.64 -0.42 16 2 C -0.07 -0.98 2.88 -12.29 -0.04 -1.02 16 3 H 0.12 1.56 7.12 -2.39 -0.02 1.54 16 4 C 0.51 10.68 7.03 87.66 0.62 11.30 16 5 O -0.58 -16.98 15.13 -3.05 -0.05 -17.03 16 6 N -0.71 -12.52 5.45 -463.06 -2.52 -15.04 16 7 C 0.14 3.15 5.51 86.38 0.48 3.63 16 8 C -0.09 -2.06 3.75 -10.21 -0.04 -2.10 16 9 H 0.13 1.98 8.14 -2.38 -0.02 1.97 16 10 C -0.15 -4.70 7.45 31.18 0.23 -4.47 16 11 C 0.14 5.17 4.47 45.52 0.20 5.37 16 12 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 13 N -0.73 -36.45 5.41 -320.45 -1.73 -38.18 16 14 C -0.24 -13.13 9.97 84.04 0.84 -12.29 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 16 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 17 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 18 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 C -0.14 -3.96 7.39 31.12 0.23 -3.73 16 23 C -0.12 -2.02 4.40 -19.82 -0.09 -2.10 16 24 C -0.03 -0.53 7.93 22.26 0.18 -0.35 16 25 C -0.16 -2.38 10.02 22.32 0.22 -2.16 16 26 C 0.12 2.00 7.30 22.37 0.16 2.16 16 27 F -0.14 -2.45 17.27 44.97 0.78 -1.68 16 28 C -0.20 -3.35 10.01 22.36 0.22 -3.12 16 29 C 0.12 2.23 7.24 22.37 0.16 2.39 16 30 F -0.13 -2.62 16.19 44.97 0.73 -1.89 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.38 7.56 -2.39 -0.02 0.37 16 33 H 0.07 0.52 7.37 -2.39 -0.02 0.50 16 34 H 0.42 4.71 7.89 -92.71 -0.73 3.98 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.21 7.85 -2.38 -0.02 1.19 16 37 H 0.05 1.89 7.90 -2.38 -0.02 1.87 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.37 20.23 7.91 -92.71 -0.73 19.49 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 43 H 0.15 2.04 7.51 -2.91 -0.02 2.01 16 44 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.01 383.40 3.57 -68.43 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.43 Total: 28.42 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.49 Total: -11.19 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -3.97 Total: -113.17 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.03 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 1.50 Total: -3.57 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.01 3.57 -68.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691478615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.744 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds