Wall clock time and date at job start Tue Mar 31 2020 21:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47194 * 179.97438 * 7 6 4 9 9 H 1.09000 * 112.85241 * 45.33204 * 8 7 6 10 10 C 1.53781 * 113.61610 * 176.52955 * 8 7 6 11 11 C 1.53777 * 87.08242 * 139.97900 * 10 8 7 12 12 H 1.08998 * 113.61735 * 89.12072 * 11 10 8 13 13 N 1.46498 * 113.61237 * 219.93400 * 11 10 8 14 14 C 1.36945 * 120.00034 * 204.99960 * 13 11 10 15 15 H 1.08002 * 119.99813 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00033 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00478 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47136 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46952 * 120.00220 * 18 16 14 21 21 H 1.48502 * 109.47209 * 240.00024 * 18 16 14 22 22 C 1.53787 * 113.61519 * 274.13553 * 8 7 6 23 23 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 24 24 C 1.38230 * 119.98541 * 300.00370 * 23 2 1 25 25 C 1.38182 * 120.04942 * 179.97438 * 24 23 2 26 26 C 1.38496 * 120.02685 * 0.02562 * 25 24 23 27 27 F 1.35100 * 120.01562 * 179.97438 * 26 25 24 28 28 C 1.38401 * 119.97224 * 0.02562 * 26 25 24 29 29 C 1.38439 * 119.94943 * 359.72179 * 28 26 25 30 30 F 1.35101 * 120.01274 * 180.27520 * 29 28 26 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 34 34 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 35 35 H 1.09002 * 109.47021 * 299.99722 * 7 6 4 36 36 H 1.09001 * 109.47001 * 59.99554 * 7 6 4 37 37 H 1.09000 * 113.61547 * 254.53056 * 10 8 7 38 38 H 1.08998 * 113.61247 * 25.34425 * 10 8 7 39 39 H 0.97002 * 120.00729 * 25.00187 * 13 11 10 40 40 H 0.96992 * 120.00632 * 179.97438 * 17 16 14 41 41 H 1.09005 * 113.61080 * 334.56801 * 22 8 7 42 42 H 1.08995 * 113.61140 * 105.46656 * 22 8 7 43 43 H 1.08002 * 119.97761 * 359.97438 * 24 23 2 44 44 H 1.08006 * 119.98891 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.02210 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6857 -0.2187 4.9000 9 1 0.6284 0.0391 4.8382 10 6 2.0742 -0.9148 6.2150 11 6 2.3300 0.4881 6.7905 12 1 1.4492 0.9404 7.2462 13 7 3.5159 0.5636 7.6473 14 6 3.6036 1.5324 8.6113 15 1 2.7983 2.2405 8.7401 16 6 4.7270 1.6036 9.4234 17 7 5.7083 0.7404 9.2668 18 14 4.8464 2.9246 10.7388 19 1 3.6210 3.7630 10.7110 20 1 4.9778 2.2847 12.0724 21 1 6.0352 3.7759 10.4790 22 6 2.5800 0.9511 5.3437 23 6 2.0324 -0.7104 -1.2304 24 6 1.6983 -2.0338 -1.4489 25 6 2.1578 -2.6863 -2.5770 26 6 2.9542 -2.0151 -3.4898 27 9 3.4038 -2.6534 -4.5923 28 6 3.2903 -0.6904 -3.2715 29 6 2.8250 -0.0361 -2.1436 30 9 3.1477 1.2586 -1.9321 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.1492 0.5389 2.5435 35 1 1.8325 -1.9680 3.6509 36 1 3.2854 -0.9398 3.6506 37 1 1.2463 -1.4386 6.6930 38 1 2.9729 -1.5265 6.1363 39 1 4.2390 -0.0725 7.5319 40 1 6.4934 0.7904 9.8340 41 1 3.6182 0.8516 5.0267 42 1 2.1599 1.9314 5.1192 43 1 1.0776 -2.5582 -0.7375 44 1 1.8958 -3.7203 -2.7469 45 1 3.9116 -0.1663 -3.9825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691478616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:38 Heat of formation + Delta-G solvation = -99.322222 kcal Electronic energy + Delta-G solvation = -28082.155285 eV Core-core repulsion = 23735.276960 eV Total energy + Delta-G solvation = -4346.878325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.11681 -50.04726 -41.34593 -40.09482 -39.34274 -36.04177 -35.29638 -34.84264 -32.18759 -31.84048 -30.27751 -28.54379 -26.44333 -26.04257 -25.47052 -24.22173 -23.29089 -22.33951 -21.20429 -20.37009 -19.32516 -19.05420 -18.55295 -17.93799 -17.38878 -17.01353 -16.86756 -16.64984 -16.46000 -16.36042 -16.32859 -15.83179 -15.53038 -15.45415 -15.11003 -14.96333 -14.72702 -14.42031 -13.83170 -13.76429 -13.41644 -13.34919 -13.22169 -13.03504 -12.98490 -12.90899 -12.78709 -12.65031 -12.27226 -12.17051 -12.13442 -12.05246 -11.56503 -11.53534 -11.08454 -10.84928 -10.73510 -10.09311 -10.03984 -9.67979 -8.97066 -7.94587 -5.22827 -0.14482 -0.00792 1.47414 1.48042 1.58107 1.61434 2.07463 2.43776 2.56817 2.80308 3.26883 3.37498 3.41075 3.51472 3.70324 3.77655 3.79349 3.90021 3.98356 4.09748 4.14153 4.27263 4.28266 4.37296 4.44720 4.58020 4.67699 4.76731 4.80276 4.85560 4.87475 4.92366 4.99613 5.00759 5.03276 5.08046 5.20289 5.24321 5.29051 5.38755 5.45369 5.54437 5.71191 5.75553 6.28059 6.56880 7.24725 7.33264 8.12289 8.33282 9.29160 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.001824 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.446497 B =15343.533571 C =15569.899562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 H 0.118 0.882 4 C 0.514 3.486 5 O -0.576 6.576 6 N -0.710 5.710 7 C 0.139 3.861 8 C -0.093 4.093 9 H 0.125 0.875 10 C -0.137 4.137 11 C 0.142 3.858 12 H 0.082 0.918 13 N -0.731 5.731 14 C -0.239 4.239 15 H 0.080 0.920 16 C -0.082 4.082 17 N -0.973 5.973 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.295 1.295 21 H -0.296 1.296 22 C -0.155 4.155 23 C -0.117 4.117 24 C -0.033 4.033 25 C -0.160 4.160 26 C 0.117 3.883 27 F -0.137 7.137 28 C -0.196 4.196 29 C 0.121 3.879 30 F -0.135 7.135 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.416 0.584 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 -3.299 -27.212 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 H 0.135 0.865 4 C 0.301 3.699 5 O -0.456 6.456 6 N -0.362 5.362 7 C 0.015 3.985 8 C -0.112 4.112 9 H 0.143 0.857 10 C -0.177 4.177 11 C 0.033 3.967 12 H 0.100 0.900 13 N -0.368 5.368 14 C -0.371 4.371 15 H 0.098 0.902 16 C -0.274 4.274 17 N -0.624 5.624 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.222 1.222 21 H -0.224 1.224 22 C -0.195 4.195 23 C -0.118 4.118 24 C -0.051 4.051 25 C -0.178 4.178 26 C 0.098 3.902 27 F -0.115 7.115 28 C -0.216 4.216 29 C 0.101 3.899 30 F -0.113 7.113 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.169 0.831 44 H 0.180 0.820 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.562 -3.806 -27.166 31.538 hybrid contribution 1.233 0.808 0.706 1.634 sum -14.329 -2.997 -26.460 30.240 Atomic orbital electron populations 1.21848 0.88783 1.03973 1.04810 1.20249 1.00157 1.00329 0.88194 0.86452 1.20816 0.79584 0.84204 0.85293 1.90719 1.39305 1.28261 1.87267 1.45862 1.53257 1.32325 1.04717 1.21207 0.97895 0.96193 0.83205 1.22467 1.00799 0.96106 0.91833 0.85697 1.23319 1.01239 0.97268 0.95835 1.22011 0.89719 0.95739 0.89277 0.90040 1.42659 1.19236 1.36056 1.38855 1.19782 1.01645 1.07097 1.08602 0.90170 1.25614 0.97069 1.01831 1.02903 1.69831 1.09079 1.40160 1.43320 0.85071 0.77567 0.78549 0.78576 1.18654 1.22241 1.22381 1.23751 0.98575 0.98243 0.98970 1.19622 1.00305 0.95754 0.96125 1.20839 0.96775 0.92167 0.95362 1.21441 0.99540 1.02484 0.94357 1.17433 0.97415 0.90452 0.84906 1.91521 1.87493 1.81590 1.50925 1.21113 1.05778 0.94825 0.99877 1.17209 0.98069 0.79092 0.95516 1.91503 1.91088 1.34008 1.94706 0.91297 0.89408 0.89916 0.74648 0.91304 0.94016 0.90206 0.91718 0.79733 0.94161 0.92936 0.91264 0.83129 0.81974 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 71.98 0.64 -0.42 16 2 C -0.07 -0.99 2.88 -12.28 -0.04 -1.02 16 3 H 0.12 1.57 7.12 -2.39 -0.02 1.55 16 4 C 0.51 10.70 7.02 87.66 0.62 11.31 16 5 O -0.58 -16.97 15.11 -3.02 -0.05 -17.02 16 6 N -0.71 -12.55 5.45 -463.07 -2.52 -15.07 16 7 C 0.14 3.15 5.50 86.38 0.47 3.63 16 8 C -0.09 -2.06 3.75 -10.27 -0.04 -2.10 16 9 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 10 C -0.14 -3.99 7.40 31.12 0.23 -3.76 16 11 C 0.14 5.18 4.48 45.57 0.20 5.39 16 12 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 13 N -0.73 -36.41 5.41 -320.18 -1.73 -38.15 16 14 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 17 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 18 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 C -0.15 -4.68 7.45 31.18 0.23 -4.45 16 23 C -0.12 -2.02 4.40 -19.82 -0.09 -2.11 16 24 C -0.03 -0.53 7.92 22.25 0.18 -0.35 16 25 C -0.16 -2.38 10.02 22.32 0.22 -2.16 16 26 C 0.12 2.00 7.30 22.37 0.16 2.16 16 27 F -0.14 -2.45 17.27 44.97 0.78 -1.68 16 28 C -0.20 -3.35 10.01 22.36 0.22 -3.13 16 29 C 0.12 2.23 7.24 22.37 0.16 2.40 16 30 F -0.13 -2.62 16.19 44.97 0.73 -1.90 16 31 H 0.07 0.52 7.39 -2.39 -0.02 0.51 16 32 H 0.09 0.39 7.56 -2.39 -0.02 0.37 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.42 4.75 7.89 -92.70 -0.73 4.02 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.21 7.87 -2.39 -0.02 1.19 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 39 H 0.37 20.23 7.93 -92.71 -0.73 19.49 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.05 1.88 7.92 -2.38 -0.02 1.86 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.15 2.05 7.51 -2.91 -0.02 2.02 16 44 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -71.90 383.44 3.57 -68.33 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.43 Total: 28.53 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.49 Total: -11.19 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.97 Total: -113.15 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 1.50 Total: -3.57 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -71.90 3.57 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691478616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.992 kcal (2) G-P(sol) polarization free energy of solvation -71.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds