Wall clock time and date at job start Tue Mar 31 2020 21:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47157 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00117 * 2 1 3 5 5 O 1.21285 * 119.99769 * 240.00379 * 4 2 1 6 6 N 1.34774 * 120.00194 * 59.99305 * 4 2 1 7 7 C 1.46506 * 120.00092 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46890 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.85471 * 316.19940 * 8 7 6 10 10 C 1.53785 * 113.61299 * 87.50932 * 8 7 6 11 11 C 1.53774 * 87.08035 * 139.97770 * 10 8 7 12 12 H 1.08998 * 113.69432 * 89.12997 * 11 10 8 13 13 N 1.46510 * 113.61503 * 220.01699 * 11 10 8 14 14 C 1.36935 * 119.99776 * 252.50274 * 13 11 10 15 15 H 1.07997 * 120.00259 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99472 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00240 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99684 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00337 * 18 16 14 20 20 H 1.48503 * 109.47399 * 209.99827 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00433 * 18 16 14 22 22 C 1.53777 * 87.08227 * 334.56418 * 11 10 8 23 23 C 1.50704 * 109.47051 * 120.00013 * 2 1 3 24 24 C 1.38257 * 119.96223 * 240.00034 * 23 2 1 25 25 C 1.38213 * 120.06442 * 179.97438 * 24 23 2 26 26 C 1.38406 * 120.00468 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.03802 * 179.97438 * 26 25 24 28 28 C 1.38649 * 119.92910 * 0.02562 * 26 25 24 29 29 F 1.35103 * 120.03873 * 180.02562 * 28 26 25 30 30 C 1.38207 * 119.96200 * 59.72390 * 23 2 1 31 31 H 1.08997 * 109.46773 * 300.00175 * 1 2 3 32 32 H 1.08998 * 109.46706 * 59.99660 * 1 2 3 33 33 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99785 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.46579 * 60.01189 * 7 6 4 36 36 H 1.08998 * 109.47444 * 300.00777 * 7 6 4 37 37 H 1.09002 * 113.61539 * 25.42801 * 10 8 7 38 38 H 1.09000 * 113.61235 * 254.52622 * 10 8 7 39 39 H 0.96998 * 119.99423 * 72.49422 * 13 11 10 40 40 H 0.97000 * 119.99789 * 359.97438 * 17 16 14 41 41 H 1.09004 * 113.61029 * 139.98019 * 22 11 10 42 42 H 1.09000 * 113.61731 * 270.88475 * 22 11 10 43 43 H 1.07994 * 119.96394 * 359.97438 * 24 23 2 44 44 H 1.08002 * 119.99395 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.00340 * 0.02562 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 6 1.6857 -0.2188 -4.9000 9 1 0.6352 0.0625 -4.8273 10 6 2.6010 0.9254 -5.3670 11 6 2.3212 0.4571 -6.8047 12 1 1.4450 0.9238 -7.2548 13 7 3.4987 0.4996 -7.6755 14 6 3.5959 1.4575 -8.6492 15 1 2.8044 2.1813 -8.7756 16 6 4.7118 1.4981 -9.4738 17 7 5.6766 0.6162 -9.3195 18 14 4.8441 2.8043 -10.8026 19 1 5.5172 4.0069 -10.2492 20 1 5.6361 2.2738 -11.9412 21 1 3.4843 3.1709 -11.2736 22 6 2.0424 -0.9348 -6.2134 23 6 2.0324 -0.7104 1.2305 24 6 2.8272 -0.0378 2.1401 25 6 3.2886 -0.6871 3.2696 26 6 2.9556 -2.0122 3.4908 27 9 3.4067 -2.6477 4.5943 28 6 2.1594 -2.6870 2.5781 29 9 1.8325 -3.9803 2.7920 30 6 1.6933 -2.0319 1.4513 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.1492 0.5388 -2.5435 35 1 1.8325 -1.9680 -3.6509 36 1 3.2855 -0.9399 -3.6506 37 1 3.6407 0.8047 -5.0630 38 1 2.2069 1.9174 -5.1465 39 1 4.2094 -0.1507 -7.5621 40 1 5.6080 -0.0618 -8.6292 41 1 1.1972 -1.4445 -6.6762 42 1 2.9294 -1.5641 -6.1408 43 1 3.0877 0.9960 1.9678 44 1 3.9090 -0.1604 3.9795 45 1 1.0690 -2.5551 0.7421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691478781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:42 Heat of formation + Delta-G solvation = -79.262906 kcal Electronic energy + Delta-G solvation = -27961.529280 eV Core-core repulsion = 23615.520792 eV Total energy + Delta-G solvation = -4346.008488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.75958 -48.83514 -40.67661 -39.19261 -38.42087 -34.90356 -34.48830 -33.58046 -31.21566 -30.24787 -29.56132 -27.36406 -25.24519 -25.12416 -23.77251 -23.53390 -22.46820 -21.28147 -20.41089 -19.15631 -18.31292 -17.83984 -17.51315 -17.29408 -16.83080 -16.55804 -16.23657 -15.62200 -15.24843 -15.10879 -15.02728 -14.80808 -14.48749 -14.42650 -14.08756 -13.83191 -13.69917 -13.47161 -13.35661 -13.01441 -12.81953 -12.43015 -12.11428 -12.05588 -11.98384 -11.77387 -11.62673 -11.54553 -11.01830 -10.76888 -10.43404 -10.35949 -10.05706 -9.97015 -9.87079 -9.42310 -9.20062 -9.12607 -9.01352 -8.90847 -7.07554 -6.14727 -3.14937 0.49031 0.63461 2.40961 2.78178 3.15265 3.41577 3.48717 3.53503 3.67663 3.89600 4.01723 4.11614 4.42381 4.51717 4.61385 4.63077 4.69565 4.78644 4.84403 4.88612 5.09212 5.10493 5.23617 5.34601 5.37067 5.44065 5.44182 5.47994 5.57912 5.58945 5.70237 5.72442 5.81578 5.87872 5.92505 6.12620 6.16258 6.21425 6.31716 6.34875 6.45991 6.67399 6.97367 7.30288 7.76958 8.01284 8.71055 9.17905 10.04286 10.19249 11.33412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.001741 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.296856 B =16077.187812 C =16234.638336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.113 0.887 4 C 0.513 3.487 5 O -0.533 6.533 6 N -0.722 5.722 7 C 0.132 3.868 8 C -0.126 4.126 9 H 0.089 0.911 10 C -0.160 4.160 11 C 0.171 3.829 12 H 0.077 0.923 13 N -0.725 5.725 14 C -0.336 4.336 15 H 0.066 0.934 16 C -0.046 4.046 17 N -0.943 5.943 18 Si 1.083 2.917 19 H -0.295 1.295 20 H -0.288 1.288 21 H -0.295 1.295 22 C -0.144 4.144 23 C -0.048 4.048 24 C -0.092 4.092 25 C -0.127 4.127 26 C 0.066 3.934 27 F -0.130 7.130 28 C 0.067 3.933 29 F -0.129 7.129 30 C -0.091 4.091 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.368 0.632 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 -0.410 26.183 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 H 0.131 0.869 4 C 0.298 3.702 5 O -0.409 6.409 6 N -0.373 5.373 7 C 0.009 3.991 8 C -0.145 4.145 9 H 0.107 0.893 10 C -0.202 4.202 11 C 0.059 3.941 12 H 0.095 0.905 13 N -0.364 5.364 14 C -0.467 4.467 15 H 0.084 0.916 16 C -0.243 4.243 17 N -0.588 5.588 18 Si 0.914 3.086 19 H -0.223 1.223 20 H -0.214 1.214 21 H -0.221 1.221 22 C -0.184 4.184 23 C -0.049 4.049 24 C -0.110 4.110 25 C -0.145 4.145 26 C 0.045 3.955 27 F -0.109 7.109 28 C 0.047 3.953 29 F -0.108 7.108 30 C -0.110 4.110 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.202 0.798 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.534 -0.461 24.959 27.499 hybrid contribution -0.931 -0.776 1.547 1.965 sum -12.465 -1.237 26.505 29.316 Atomic orbital electron populations 1.21836 0.91453 1.03389 1.03419 1.20332 0.98109 1.00573 0.90372 0.86937 1.20371 0.80547 0.84827 0.84492 1.90759 1.37364 1.26129 1.86633 1.46021 1.53542 1.32106 1.05622 1.21448 0.99422 0.95767 0.82469 1.22630 0.99750 0.98976 0.93161 0.89259 1.23937 0.98796 0.96375 1.01048 1.21458 0.91238 0.92848 0.88539 0.90540 1.42427 1.19353 1.36540 1.38052 1.20122 1.06160 1.09147 1.11318 0.91637 1.25813 0.93156 1.03299 1.02051 1.70853 1.33999 1.18299 1.35608 0.83192 0.74985 0.74610 0.75823 1.22291 1.21355 1.22130 1.23465 1.01193 0.99136 0.94609 1.19203 0.97294 0.93215 0.95143 1.20969 0.96406 1.00662 0.92939 1.21021 1.01798 0.92131 0.99597 1.17715 1.00104 0.92141 0.85502 1.91529 1.87339 1.81896 1.50125 1.17627 1.01089 0.79912 0.96647 1.91535 1.90985 1.33503 1.94728 1.20844 1.00366 0.94637 0.95163 0.90853 0.91152 0.91661 0.76509 0.91677 0.91244 0.90515 0.92656 0.79819 0.93314 0.91894 0.90291 0.84085 0.83535 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.90 37.16 0.33 -0.33 16 2 C -0.07 -0.48 2.90 -92.92 -0.27 -0.75 16 3 H 0.11 0.50 7.87 -51.93 -0.41 0.09 16 4 C 0.51 5.34 7.03 -10.99 -0.08 5.26 16 5 O -0.53 -7.88 15.13 5.55 0.08 -7.80 16 6 N -0.72 -6.76 5.45 -60.29 -0.33 -7.09 16 7 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 8 C -0.13 -1.54 3.76 -89.81 -0.34 -1.88 16 9 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 10 C -0.16 -2.51 7.43 -25.92 -0.19 -2.70 16 11 C 0.17 3.22 4.48 -67.12 -0.30 2.92 16 12 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 13 N -0.72 -17.77 5.40 -52.64 -0.28 -18.05 16 14 C -0.34 -9.32 9.97 -15.06 -0.15 -9.47 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 16 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 17 N -0.94 -29.03 13.70 55.49 0.76 -28.27 16 18 Si 1.08 25.66 29.92 -169.99 -5.09 20.57 16 19 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 23 C -0.05 -0.39 4.39 -104.62 -0.46 -0.85 16 24 C -0.09 -0.62 9.67 -39.58 -0.38 -1.00 16 25 C -0.13 -0.94 10.02 -39.53 -0.40 -1.34 16 26 C 0.07 0.65 7.31 -39.37 -0.29 0.36 16 27 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 28 C 0.07 0.72 7.31 -39.36 -0.29 0.44 16 29 F -0.13 -1.54 17.18 2.25 0.04 -1.51 16 30 C -0.09 -0.88 7.91 -39.53 -0.31 -1.19 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.24 7.56 -51.93 -0.39 -0.15 16 33 H 0.06 0.35 7.37 -51.93 -0.38 -0.03 16 34 H 0.40 2.68 7.89 -40.82 -0.32 2.36 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 37 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.37 9.38 6.76 -40.82 -0.28 9.10 16 40 H 0.26 7.75 6.77 -40.82 -0.28 7.47 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 43 H 0.14 0.57 7.94 -52.49 -0.42 0.15 16 44 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.14 1.34 7.51 -52.49 -0.39 0.95 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -34.30 382.94 -8.71 -43.01 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.27 Total: 7.51 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.43 Total: -12.77 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.15 Total: -53.42 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.08 Total: -7.80 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.09 Total: 20.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.30 -8.71 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691478781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.251 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds