Wall clock time and date at job start Tue Mar 31 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47157 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00117 * 2 1 3 5 5 O 1.21285 * 119.99769 * 240.00379 * 4 2 1 6 6 N 1.34774 * 120.00194 * 59.99305 * 4 2 1 7 7 C 1.46506 * 120.00092 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46890 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.85471 * 316.19940 * 8 7 6 10 10 C 1.53785 * 113.61299 * 87.50932 * 8 7 6 11 11 C 1.53774 * 87.08035 * 139.97770 * 10 8 7 12 12 H 1.08998 * 113.69432 * 89.12997 * 11 10 8 13 13 N 1.46510 * 113.61503 * 220.01699 * 11 10 8 14 14 C 1.36935 * 119.99776 * 252.50274 * 13 11 10 15 15 H 1.07997 * 120.00259 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99472 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00240 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99684 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00337 * 18 16 14 20 20 H 1.48503 * 109.47399 * 209.99827 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00433 * 18 16 14 22 22 C 1.53777 * 87.08227 * 334.56418 * 11 10 8 23 23 C 1.50704 * 109.47051 * 120.00013 * 2 1 3 24 24 C 1.38257 * 119.96223 * 240.00034 * 23 2 1 25 25 C 1.38213 * 120.06442 * 179.97438 * 24 23 2 26 26 C 1.38406 * 120.00468 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.03802 * 179.97438 * 26 25 24 28 28 C 1.38649 * 119.92910 * 0.02562 * 26 25 24 29 29 F 1.35103 * 120.03873 * 180.02562 * 28 26 25 30 30 C 1.38207 * 119.96200 * 59.72390 * 23 2 1 31 31 H 1.08997 * 109.46773 * 300.00175 * 1 2 3 32 32 H 1.08998 * 109.46706 * 59.99660 * 1 2 3 33 33 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99785 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.46579 * 60.01189 * 7 6 4 36 36 H 1.08998 * 109.47444 * 300.00777 * 7 6 4 37 37 H 1.09002 * 113.61539 * 25.42801 * 10 8 7 38 38 H 1.09000 * 113.61235 * 254.52622 * 10 8 7 39 39 H 0.96998 * 119.99423 * 72.49422 * 13 11 10 40 40 H 0.97000 * 119.99789 * 359.97438 * 17 16 14 41 41 H 1.09004 * 113.61029 * 139.98019 * 22 11 10 42 42 H 1.09000 * 113.61731 * 270.88475 * 22 11 10 43 43 H 1.07994 * 119.96394 * 359.97438 * 24 23 2 44 44 H 1.08002 * 119.99395 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.00340 * 0.02562 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 6 1.6857 -0.2188 -4.9000 9 1 0.6352 0.0625 -4.8273 10 6 2.6010 0.9254 -5.3670 11 6 2.3212 0.4571 -6.8047 12 1 1.4450 0.9238 -7.2548 13 7 3.4987 0.4996 -7.6755 14 6 3.5959 1.4575 -8.6492 15 1 2.8044 2.1813 -8.7756 16 6 4.7118 1.4981 -9.4738 17 7 5.6766 0.6162 -9.3195 18 14 4.8441 2.8043 -10.8026 19 1 5.5172 4.0069 -10.2492 20 1 5.6361 2.2738 -11.9412 21 1 3.4843 3.1709 -11.2736 22 6 2.0424 -0.9348 -6.2134 23 6 2.0324 -0.7104 1.2305 24 6 2.8272 -0.0378 2.1401 25 6 3.2886 -0.6871 3.2696 26 6 2.9556 -2.0122 3.4908 27 9 3.4067 -2.6477 4.5943 28 6 2.1594 -2.6870 2.5781 29 9 1.8325 -3.9803 2.7920 30 6 1.6933 -2.0319 1.4513 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.1492 0.5388 -2.5435 35 1 1.8325 -1.9680 -3.6509 36 1 3.2855 -0.9399 -3.6506 37 1 3.6407 0.8047 -5.0630 38 1 2.2069 1.9174 -5.1465 39 1 4.2094 -0.1507 -7.5621 40 1 5.6080 -0.0618 -8.6292 41 1 1.1972 -1.4445 -6.6762 42 1 2.9294 -1.5641 -6.1408 43 1 3.0877 0.9960 1.9678 44 1 3.9090 -0.1604 3.9795 45 1 1.0690 -2.5551 0.7421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691478781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:41 Heat of formation + Delta-G solvation = -100.904365 kcal Electronic energy + Delta-G solvation = -27962.467724 eV Core-core repulsion = 23615.520792 eV Total energy + Delta-G solvation = -4346.946932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.55803 -49.64552 -41.43740 -40.22982 -39.40916 -36.28478 -35.34607 -34.88418 -32.00449 -31.82737 -30.30138 -28.48650 -26.53223 -25.92204 -25.46854 -24.25818 -23.33637 -22.49405 -21.27900 -20.40912 -19.37138 -19.03490 -18.52316 -18.20318 -17.59927 -17.36298 -17.17120 -16.72875 -16.49087 -16.10093 -16.07181 -15.71425 -15.59275 -15.29359 -15.19981 -15.06453 -14.79040 -14.59688 -14.24962 -13.60759 -13.44462 -13.38466 -13.32014 -13.11896 -13.03027 -12.67707 -12.60641 -12.54858 -12.25528 -12.16434 -12.05495 -11.82216 -11.64032 -11.38943 -11.06070 -10.84305 -10.73752 -10.09308 -10.05291 -9.70178 -9.08479 -8.38984 -5.32572 -0.18118 -0.00025 1.58698 1.62813 1.69580 1.83402 2.06277 2.45897 2.72698 2.75016 3.23520 3.37460 3.38744 3.55447 3.62307 3.68146 3.74979 3.90269 3.98608 4.06160 4.11388 4.18876 4.26452 4.33997 4.35805 4.50550 4.65336 4.73791 4.78791 4.83279 4.88924 4.89900 4.90393 4.95511 5.00200 5.02133 5.16209 5.26071 5.30445 5.36296 5.42474 5.60975 5.66992 5.70695 6.48847 6.57476 7.10052 7.26495 8.00497 8.13585 9.12749 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.001741 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.296856 B =16077.187812 C =16234.638336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 H 0.147 0.853 4 C 0.509 3.491 5 O -0.583 6.583 6 N -0.709 5.709 7 C 0.139 3.861 8 C -0.091 4.091 9 H 0.125 0.875 10 C -0.151 4.151 11 C 0.145 3.855 12 H 0.079 0.921 13 N -0.743 5.743 14 C -0.330 4.330 15 H 0.071 0.929 16 C -0.111 4.111 17 N -0.979 5.979 18 Si 1.131 2.869 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.270 1.270 22 C -0.140 4.140 23 C -0.054 4.054 24 C -0.081 4.081 25 C -0.120 4.120 26 C 0.045 3.955 27 F -0.142 7.142 28 C 0.038 3.962 29 F -0.146 7.146 30 C -0.101 4.101 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.418 0.582 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.358 0.642 40 H 0.243 0.757 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.180 0.820 44 H 0.174 0.826 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 2.500 27.063 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 H 0.165 0.835 4 C 0.296 3.704 5 O -0.463 6.463 6 N -0.362 5.362 7 C 0.015 3.985 8 C -0.110 4.110 9 H 0.143 0.857 10 C -0.191 4.191 11 C 0.036 3.964 12 H 0.097 0.903 13 N -0.383 5.383 14 C -0.461 4.461 15 H 0.089 0.911 16 C -0.302 4.302 17 N -0.627 5.627 18 Si 0.956 3.044 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.195 1.195 22 C -0.180 4.180 23 C -0.054 4.054 24 C -0.099 4.099 25 C -0.138 4.138 26 C 0.025 3.975 27 F -0.121 7.121 28 C 0.018 3.982 29 F -0.125 7.125 30 C -0.120 4.120 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.256 0.744 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.189 0.811 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.197 0.803 44 H 0.192 0.808 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.610 2.481 25.886 29.351 hybrid contribution -0.374 -1.685 1.312 2.168 sum -13.984 0.796 27.198 30.593 Atomic orbital electron populations 1.21879 0.89659 1.03189 1.05204 1.20406 0.99417 1.01235 0.87289 0.83525 1.21087 0.79515 0.84202 0.85570 1.90752 1.39703 1.28477 1.87347 1.45853 1.53308 1.32367 1.04637 1.21162 0.97934 0.95980 0.83441 1.22450 1.00787 0.96090 0.91676 0.85661 1.23690 0.98502 0.98508 0.98423 1.21930 0.89478 0.95842 0.89130 0.90308 1.42674 1.20922 1.35929 1.38745 1.20502 1.05601 1.09015 1.11031 0.91104 1.27251 0.93317 1.04952 1.04674 1.70970 1.35569 1.19674 1.36512 0.82583 0.76092 0.72586 0.73184 1.21187 1.22289 1.19502 1.23356 1.01236 0.97260 0.96146 1.19510 0.97233 0.92638 0.96053 1.21422 0.94617 1.02138 0.91728 1.21395 1.01255 0.90931 1.00261 1.18042 1.00803 0.93281 0.85329 1.91491 1.87553 1.82348 1.50666 1.17958 1.02676 0.79637 0.97914 1.91477 1.91346 1.34718 1.94949 1.20907 1.00729 0.95655 0.94710 0.89130 0.89307 0.92940 0.74434 0.91949 0.93860 0.92807 0.91012 0.81056 0.94699 0.90400 0.91780 0.80297 0.80836 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.90 71.98 0.64 -0.16 16 2 C -0.06 -0.62 2.90 -12.28 -0.04 -0.65 16 3 H 0.15 0.50 7.87 -2.39 -0.02 0.48 16 4 C 0.51 9.56 7.03 87.66 0.62 10.18 16 5 O -0.58 -17.11 15.13 -3.05 -0.05 -17.16 16 6 N -0.71 -11.27 5.45 -463.05 -2.52 -13.79 16 7 C 0.14 3.08 5.51 86.38 0.48 3.55 16 8 C -0.09 -1.98 3.76 -10.27 -0.04 -2.01 16 9 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 10 C -0.15 -4.44 7.43 31.12 0.23 -4.21 16 11 C 0.15 5.32 4.48 45.51 0.20 5.53 16 12 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 13 N -0.74 -36.89 5.40 -320.45 -1.73 -38.62 16 14 C -0.33 -18.27 9.97 84.03 0.84 -17.44 16 15 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 16 C -0.11 -6.46 5.50 84.86 0.47 -5.99 16 17 N -0.98 -61.84 13.70 21.65 0.30 -61.55 16 18 Si 1.13 51.56 29.92 68.60 2.05 53.61 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 C -0.14 -4.09 7.39 31.12 0.23 -3.86 16 23 C -0.05 -0.75 4.39 -19.87 -0.09 -0.84 16 24 C -0.08 -0.83 9.67 22.27 0.22 -0.61 16 25 C -0.12 -1.52 10.02 22.30 0.22 -1.30 16 26 C 0.05 0.90 7.31 22.41 0.16 1.06 16 27 F -0.14 -3.17 17.18 44.97 0.77 -2.39 16 28 C 0.04 0.85 7.31 22.41 0.16 1.02 16 29 F -0.15 -3.80 17.18 44.97 0.77 -3.03 16 30 C -0.10 -1.96 7.91 22.30 0.18 -1.78 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.09 0.19 7.56 -2.39 -0.02 0.17 16 33 H 0.05 0.45 7.37 -2.39 -0.02 0.44 16 34 H 0.42 3.72 7.89 -92.71 -0.73 2.99 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.21 7.84 -2.39 -0.02 1.19 16 37 H 0.05 1.86 7.90 -2.39 -0.02 1.84 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.36 18.91 6.76 -92.71 -0.63 18.28 16 40 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 2.07 8.08 -2.39 -0.02 2.06 16 43 H 0.18 0.46 7.94 -2.91 -0.02 0.44 16 44 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 45 H 0.14 2.69 7.51 -2.91 -0.02 2.67 16 Total: -1.00 -79.01 382.94 3.89 -75.12 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.18 Total: 25.32 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.48 Total: -17.52 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -3.96 Total: -113.96 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.05 Total: -17.16 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.55 Total: -5.42 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -79.01 3.89 -75.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691478781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.787 kcal (2) G-P(sol) polarization free energy of solvation -79.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds