Wall clock time and date at job start Tue Mar 31 2020 21:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47251 * 2 1 4 4 C 1.50701 * 109.47237 * 119.99908 * 2 1 3 5 5 O 1.21276 * 120.00050 * 119.99517 * 4 2 1 6 6 N 1.34777 * 119.99679 * 299.99956 * 4 2 1 7 7 C 1.46498 * 119.99781 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47012 * 180.02562 * 7 6 4 9 9 H 1.08999 * 112.85266 * 43.80462 * 8 7 6 10 10 C 1.53786 * 113.61395 * 175.00180 * 8 7 6 11 11 C 1.53780 * 87.08184 * 139.97908 * 10 8 7 12 12 H 1.09000 * 113.61603 * 89.11353 * 11 10 8 13 13 N 1.46496 * 113.61628 * 219.93669 * 11 10 8 14 14 C 1.36938 * 120.00085 * 205.00090 * 13 11 10 15 15 H 1.07999 * 120.00135 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00280 * 179.97438 * 14 13 11 17 17 N 1.31632 * 119.99648 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00274 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46946 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46883 * 120.00159 * 18 16 14 21 21 H 1.48502 * 109.46886 * 240.00155 * 18 16 14 22 22 C 1.53781 * 87.08218 * 334.56638 * 11 10 8 23 23 C 1.50699 * 109.46933 * 239.99610 * 2 1 3 24 24 C 1.38264 * 119.96380 * 120.00466 * 23 2 1 25 25 C 1.38212 * 120.06956 * 180.30136 * 24 23 2 26 26 C 1.38410 * 120.00091 * 359.44135 * 25 24 23 27 27 F 1.35100 * 120.03634 * 180.27941 * 26 25 24 28 28 C 1.38649 * 119.92850 * 0.55685 * 26 25 24 29 29 F 1.35102 * 120.03863 * 179.70365 * 28 26 25 30 30 C 1.38212 * 119.96665 * 300.02273 * 23 2 1 31 31 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46850 * 300.00592 * 1 2 3 33 33 H 1.09001 * 109.46665 * 60.00357 * 1 2 3 34 34 H 0.97004 * 120.00359 * 0.02562 * 6 4 2 35 35 H 1.09000 * 109.47342 * 299.99673 * 7 6 4 36 36 H 1.08993 * 109.47430 * 59.99979 * 7 6 4 37 37 H 1.09004 * 113.61469 * 254.52690 * 10 8 7 38 38 H 1.09003 * 113.61754 * 25.34660 * 10 8 7 39 39 H 0.96998 * 120.00176 * 24.99475 * 13 11 10 40 40 H 0.97001 * 119.99396 * 179.97438 * 17 16 14 41 41 H 1.09002 * 113.61833 * 270.88340 * 22 11 10 42 42 H 1.09000 * 113.61569 * 139.98218 * 22 11 10 43 43 H 1.08002 * 119.96124 * 0.02562 * 24 23 2 44 44 H 1.07995 * 119.99858 * 179.70410 * 25 24 23 45 45 H 1.08004 * 120.00092 * 359.96052 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2498 2.4545 7 6 2.1947 -0.9407 3.6507 8 6 1.6843 -0.2197 4.8999 9 1 0.6338 0.0617 4.8267 10 6 2.0399 -0.9363 6.2133 11 6 2.3185 0.4553 6.8055 12 1 1.4418 0.9226 7.2538 13 7 3.4943 0.4970 7.6784 14 6 3.5903 1.4546 8.6525 15 1 2.7994 2.1794 8.7770 16 6 4.7041 1.4938 9.4800 17 7 5.6683 0.6107 9.3279 18 14 4.8354 2.8006 10.8083 19 1 3.6295 3.6663 10.7719 20 1 4.9347 2.1466 12.1379 21 1 6.0461 3.6272 10.5716 22 6 2.5993 0.9242 5.3681 23 6 2.0323 -0.7105 -1.2304 24 6 2.8273 -0.0379 -2.1401 25 6 3.2840 -0.6856 -3.2724 26 6 2.9553 -2.0122 -3.4909 27 9 3.4060 -2.6476 -4.5947 28 6 2.1582 -2.6867 -2.5787 29 9 1.8310 -3.9799 -2.7929 30 6 1.6976 -2.0336 -1.4486 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.1488 0.5386 2.5436 35 1 1.8309 -1.9682 3.6507 36 1 3.2846 -0.9412 3.6509 37 1 1.1945 -1.4461 6.6754 38 1 2.9261 -1.5668 6.1407 39 1 4.2048 -0.1538 7.5664 40 1 6.4468 0.6384 9.9059 41 1 3.6393 0.8035 5.0646 42 1 2.2055 1.9164 5.1477 43 1 3.0879 0.9959 -1.9678 44 1 3.9009 -0.1578 -3.9845 45 1 1.0769 -2.5580 -0.7371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691478782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:46 Heat of formation + Delta-G solvation = -79.636090 kcal Electronic energy + Delta-G solvation = -27919.554229 eV Core-core repulsion = 23573.529559 eV Total energy + Delta-G solvation = -4346.024670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.73997 -48.81556 -40.64139 -39.13452 -38.34519 -34.79928 -34.43311 -33.28421 -31.19316 -30.37511 -29.59335 -27.42257 -25.17311 -25.10203 -23.94380 -23.54507 -22.41698 -21.10890 -20.34573 -19.09726 -18.28679 -17.80113 -17.45105 -17.08834 -16.80287 -16.53851 -16.18855 -15.57972 -15.22919 -15.07939 -14.85236 -14.77464 -14.51533 -14.37518 -14.08663 -13.89112 -13.56468 -13.37412 -13.03604 -12.98783 -12.77133 -12.39960 -12.08381 -11.97567 -11.87907 -11.71160 -11.56474 -11.42308 -11.27184 -10.88166 -10.56148 -10.29600 -10.14219 -9.89447 -9.86794 -9.52919 -9.40014 -9.10890 -8.99172 -8.90538 -6.99604 -5.81446 -3.10492 0.51247 0.65718 2.45019 2.81488 3.18851 3.40007 3.43751 3.45445 3.47983 3.92159 4.03979 4.14054 4.45772 4.54347 4.55376 4.63995 4.72429 4.81843 4.91839 4.95493 5.13421 5.17940 5.26378 5.37167 5.43102 5.45427 5.46567 5.50467 5.60455 5.61377 5.77195 5.80387 5.88785 5.94987 6.05427 6.19368 6.26700 6.31312 6.37091 6.38900 6.54523 6.78076 7.06897 7.34944 7.66330 8.05633 8.37065 9.48153 10.06370 10.40310 11.40910 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.001737 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.133687 B =16118.445627 C =16279.400252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.113 0.887 4 C 0.512 3.488 5 O -0.533 6.533 6 N -0.721 5.721 7 C 0.132 3.868 8 C -0.127 4.127 9 H 0.088 0.912 10 C -0.143 4.143 11 C 0.166 3.834 12 H 0.075 0.925 13 N -0.713 5.713 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.161 4.161 23 C -0.048 4.048 24 C -0.091 4.091 25 C -0.127 4.127 26 C 0.065 3.935 27 F -0.131 7.131 28 C 0.067 3.933 29 F -0.129 7.129 30 C -0.091 4.091 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 -0.652 -26.163 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 H 0.131 0.869 4 C 0.297 3.703 5 O -0.409 6.409 6 N -0.373 5.373 7 C 0.009 3.991 8 C -0.146 4.146 9 H 0.106 0.894 10 C -0.183 4.183 11 C 0.054 3.946 12 H 0.093 0.907 13 N -0.351 5.351 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.202 4.202 23 C -0.049 4.049 24 C -0.110 4.110 25 C -0.146 4.146 26 C 0.045 3.955 27 F -0.109 7.109 28 C 0.047 3.953 29 F -0.108 7.108 30 C -0.110 4.110 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.931 -1.312 -26.100 28.728 hybrid contribution 0.265 0.470 0.497 0.734 sum -11.666 -0.842 -25.603 28.148 Atomic orbital electron populations 1.21835 0.91474 1.03377 1.03400 1.20335 0.98092 1.00579 0.90401 0.86947 1.20359 0.80574 0.84832 0.84500 1.90756 1.37376 1.26137 1.86627 1.46027 1.53501 1.32090 1.05640 1.21461 0.99499 0.95731 0.82451 1.22640 0.99674 0.99105 0.93203 0.89375 1.23454 1.01219 0.99159 0.94419 1.21514 0.91504 0.92902 0.88719 0.90684 1.42421 1.19360 1.36441 1.36845 1.19344 1.02995 1.07078 1.08117 0.91035 1.24788 0.97055 0.99158 1.00006 1.69678 1.09669 1.37193 1.41400 0.86115 0.77371 0.80955 0.81716 1.20534 1.21841 1.21845 1.23951 0.98873 0.96217 1.01148 1.19211 0.97267 0.93193 0.95181 1.20972 0.96395 1.00687 0.92906 1.21018 1.01887 0.92101 0.99578 1.17717 1.00092 0.92134 0.85528 1.91527 1.87343 1.81906 1.50133 1.17628 1.01105 0.79941 0.96640 1.91534 1.90970 1.33528 1.94734 1.20847 1.00395 0.94636 0.95077 0.91671 0.91144 0.90886 0.76532 0.91731 0.91155 0.92007 0.90115 0.78063 0.93476 0.90362 0.92781 0.84088 0.83558 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.90 37.16 0.33 -0.33 16 2 C -0.07 -0.48 2.90 -92.92 -0.27 -0.75 16 3 H 0.11 0.50 7.87 -51.93 -0.41 0.09 16 4 C 0.51 5.35 7.02 -10.98 -0.08 5.27 16 5 O -0.53 -7.90 15.11 5.56 0.08 -7.82 16 6 N -0.72 -6.77 5.45 -60.30 -0.33 -7.10 16 7 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 8 C -0.13 -1.55 3.76 -89.80 -0.34 -1.89 16 9 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 10 C -0.14 -2.16 7.39 -25.92 -0.19 -2.36 16 11 C 0.17 3.08 4.48 -67.12 -0.30 2.78 16 12 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 13 N -0.71 -17.42 5.40 -52.64 -0.28 -17.70 16 14 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.40 5.50 -17.42 -0.10 -0.49 16 17 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 18 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.16 -2.49 7.43 -25.92 -0.19 -2.68 16 23 C -0.05 -0.39 4.40 -104.62 -0.46 -0.85 16 24 C -0.09 -0.62 9.67 -39.58 -0.38 -1.00 16 25 C -0.13 -0.95 10.02 -39.53 -0.40 -1.34 16 26 C 0.07 0.65 7.31 -39.37 -0.29 0.36 16 27 F -0.13 -1.42 17.18 2.25 0.04 -1.39 16 28 C 0.07 0.72 7.31 -39.36 -0.29 0.43 16 29 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 30 C -0.09 -0.88 7.90 -39.53 -0.31 -1.19 16 31 H 0.06 0.35 7.39 -51.93 -0.38 -0.03 16 32 H 0.07 0.24 7.56 -51.93 -0.39 -0.15 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.40 2.67 7.89 -40.82 -0.32 2.35 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 39 H 0.39 10.08 7.93 -40.82 -0.32 9.76 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.14 0.57 7.94 -52.49 -0.42 0.15 16 44 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.14 1.35 7.51 -52.48 -0.39 0.96 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -33.17 384.65 -8.77 -41.93 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.38 Total: 7.24 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.43 Total: -9.29 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.11 Total: -51.98 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.17 -8.77 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691478782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.702 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds