Wall clock time and date at job start Tue Mar 31 2020 21:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.52998 * 109.46913 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.46906 * 55.00476 * 6 5 4 8 8 C 1.52990 * 109.47397 * 294.99911 * 6 5 4 9 9 C 1.53006 * 109.46726 * 174.99846 * 6 5 4 10 10 N 1.46497 * 109.46931 * 185.00027 * 9 6 5 11 11 C 1.34781 * 120.00032 * 180.02562 * 10 9 6 12 12 O 1.21281 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99966 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.46989 * 180.02562 * 13 11 10 15 15 C 1.76202 * 100.00029 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99780 * 0.02562 * 15 14 13 17 17 C 1.38794 * 120.00211 * 179.97438 * 15 14 13 18 18 N 1.31635 * 119.99772 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00502 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46679 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47312 * 119.99959 * 19 17 15 22 22 H 1.48500 * 109.47229 * 240.00784 * 19 17 15 23 23 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 24 24 N 1.31801 * 119.11859 * 284.72511 * 23 2 1 25 25 C 1.32337 * 120.81523 * 179.75922 * 24 23 2 26 26 C 1.38606 * 119.10407 * 0.50910 * 25 24 23 27 27 C 1.38590 * 118.39739 * 359.74815 * 26 25 24 28 28 N 1.31794 * 119.12528 * 104.99791 * 23 2 1 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.00893 * 111.00338 * 38.95410 * 4 2 1 33 33 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 34 34 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 35 35 H 1.09001 * 109.47453 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.47554 * 300.00168 * 8 6 5 37 37 H 1.09003 * 109.47194 * 59.99977 * 8 6 5 38 38 H 1.08994 * 109.47174 * 305.00262 * 9 6 5 39 39 H 1.09002 * 109.46978 * 65.00480 * 9 6 5 40 40 H 0.97000 * 120.00061 * 0.02562 * 10 9 6 41 41 H 1.09001 * 109.47701 * 300.00538 * 13 11 10 42 42 H 1.09002 * 109.46794 * 60.00537 * 13 11 10 43 43 H 0.97001 * 120.00019 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.44701 * 180.27552 * 25 24 23 45 45 H 1.07995 * 120.79523 * 179.77361 * 26 25 24 46 46 H 1.08006 * 120.44779 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5331 3.5741 7 1 3.5520 -1.0011 3.3387 8 6 1.5846 -1.6102 3.9703 9 6 2.7801 0.4459 4.7356 10 7 3.3837 -0.2534 5.8726 11 6 3.6397 0.4139 7.0153 12 8 3.3698 1.5931 7.1024 13 6 4.2601 -0.3056 8.1851 14 16 4.4764 0.8521 9.5596 15 6 5.1981 -0.2230 10.7545 16 1 5.3737 -1.2605 10.5112 17 6 5.5419 0.2636 12.0081 18 7 5.3283 1.5282 12.3044 19 14 6.3077 -0.8760 13.2747 20 1 6.4421 -2.2379 12.6980 21 1 7.6494 -0.3647 13.6536 22 1 5.4407 -0.9314 14.4791 23 6 2.0324 -0.7103 -1.2305 24 7 1.9703 -2.0258 -1.2820 25 6 2.3975 -2.6834 -2.3480 26 6 2.9246 -1.9706 -3.4134 27 6 2.9781 -0.5889 -3.3201 28 7 2.5271 0.0002 -2.2242 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.4497 -1.4979 1.4100 33 1 2.7588 1.0461 2.1183 34 1 1.0871 0.6161 2.5526 35 1 1.9504 -2.1482 4.8449 36 1 0.6288 -1.1422 4.2057 37 1 1.4536 -2.3076 3.1429 38 1 3.4317 1.2619 4.4233 39 1 1.8102 0.8474 5.0293 40 1 3.5992 -1.1966 5.8030 41 1 3.6084 -1.1217 8.4971 42 1 5.2301 -0.7070 7.8918 43 1 5.5682 1.8683 13.1806 44 1 2.3397 -3.7612 -2.3856 45 1 3.2846 -2.4797 -4.2952 46 1 3.3819 -0.0007 -4.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698740739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:30 Heat of formation + Delta-G solvation = 2.126871 kcal Electronic energy + Delta-G solvation = -25236.424818 eV Core-core repulsion = 21480.078794 eV Total energy + Delta-G solvation = -3756.346024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46871 -39.31877 -38.04724 -35.84283 -34.11098 -33.35179 -32.40875 -31.83439 -29.85413 -29.01907 -26.78938 -25.64180 -25.40371 -25.02447 -24.09380 -21.72258 -20.59439 -20.18928 -17.94746 -17.86581 -17.53987 -16.45895 -16.28690 -15.94478 -15.65575 -15.41649 -15.15613 -14.81576 -14.78626 -14.64678 -14.16737 -13.95626 -13.88849 -13.37523 -13.26250 -13.00311 -12.84420 -12.79265 -12.52687 -12.44458 -11.82217 -11.80680 -11.43529 -11.23201 -11.12835 -11.09002 -11.05331 -11.01622 -10.99357 -10.73223 -10.00479 -9.78330 -9.64419 -9.36143 -9.05872 -8.85415 -8.79156 -8.20414 -6.47464 -6.19884 -3.90077 0.45026 0.66703 3.03093 3.15292 3.20434 3.22994 3.30377 3.35404 3.38860 3.63291 3.78205 4.11395 4.15499 4.22306 4.50405 4.58654 4.61059 4.63931 4.65672 4.70891 4.79270 4.90282 5.15307 5.16235 5.19602 5.20710 5.30523 5.35970 5.43092 5.43978 5.57342 5.62801 5.67347 5.72100 5.79271 5.92894 5.93328 6.02832 6.09325 6.17461 6.50772 6.61550 6.69535 7.02070 7.61850 7.69509 7.76487 8.37433 8.66798 9.25598 10.87624 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.001507 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.575897 B =18571.480129 C =18884.080440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.152 3.848 3 H 0.106 0.894 4 N -0.676 5.676 5 C 0.066 3.934 6 C -0.101 4.101 7 H 0.087 0.913 8 C -0.151 4.151 9 C 0.127 3.873 10 N -0.737 5.737 11 C 0.531 3.469 12 O -0.519 6.519 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.337 3.663 24 N -0.502 5.502 25 C 0.148 3.852 26 C -0.236 4.236 27 C 0.149 3.851 28 N -0.518 5.518 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.352 0.648 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.167 0.833 45 H 0.147 0.853 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 -9.337 -33.294 35.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.040 3.960 3 H 0.124 0.876 4 N -0.309 5.309 5 C -0.063 4.063 6 C -0.120 4.120 7 H 0.105 0.895 8 C -0.209 4.209 9 C 0.002 3.998 10 N -0.392 5.392 11 C 0.317 3.683 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.069 3.931 24 N -0.216 5.216 25 C -0.018 4.018 26 C -0.258 4.258 27 C -0.017 4.017 28 N -0.232 5.232 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.173 0.827 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.872 -6.665 -32.356 34.206 hybrid contribution 0.404 -3.007 -0.091 3.036 sum -8.468 -9.672 -32.447 34.901 Atomic orbital electron populations 1.22443 0.94945 1.03098 1.03094 1.20131 0.93223 0.97065 0.85626 0.87638 1.60298 1.57987 1.09816 1.02752 1.21954 1.00103 0.95089 0.89149 1.21348 1.00693 0.96383 0.93549 0.89502 1.21892 0.98981 0.98464 1.01547 1.21236 0.98691 0.94628 0.85211 1.45981 1.65702 1.13742 1.13738 1.20294 0.77684 0.87331 0.82988 1.90699 1.50895 1.15650 1.82086 1.23529 1.02985 1.04744 0.99136 1.85396 1.81082 1.12726 1.04251 1.22919 1.47237 0.97938 1.00215 0.90878 1.24993 0.95420 0.95560 0.97631 1.70033 1.45076 1.13280 1.21917 0.86116 0.78780 0.80174 0.80416 1.19628 1.20579 1.20575 1.23044 0.89978 0.86674 0.93437 1.68192 1.17330 1.10051 1.25992 1.23284 0.89684 1.01097 0.87732 1.22923 1.03943 0.96848 1.02132 1.23227 0.91329 0.92547 0.94620 1.68202 1.11388 1.41947 1.01671 0.91567 0.91118 0.91792 0.82725 0.90350 0.94314 0.92115 0.92509 0.92247 0.91567 0.91649 0.76829 0.89269 0.89253 0.92258 0.81547 0.83567 0.81512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.14 37.16 0.34 -0.79 16 2 C 0.15 1.19 2.99 -68.86 -0.21 0.99 16 3 H 0.11 0.85 7.78 -51.93 -0.40 0.45 16 4 N -0.68 -5.33 6.04 -107.95 -0.65 -5.99 16 5 C 0.07 0.51 4.94 -3.82 -0.02 0.49 16 6 C -0.10 -0.84 2.63 -90.62 -0.24 -1.08 16 7 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.15 -1.14 8.84 37.15 0.33 -0.82 16 9 C 0.13 1.46 5.06 -4.04 -0.02 1.44 16 10 N -0.74 -9.90 5.28 -60.29 -0.32 -10.22 16 11 C 0.53 10.06 7.85 -10.98 -0.09 9.97 16 12 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 13 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 19 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.34 3.08 6.60 -157.19 -1.04 2.04 16 24 N -0.50 -4.37 10.10 -10.72 -0.11 -4.47 16 25 C 0.15 0.91 11.31 -17.20 -0.19 0.71 16 26 C -0.24 -1.14 10.17 -39.32 -0.40 -1.54 16 27 C 0.15 0.92 11.30 -17.20 -0.19 0.73 16 28 N -0.52 -4.70 10.32 -10.72 -0.11 -4.81 16 29 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.07 0.40 7.45 -51.93 -0.39 0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.35 2.65 6.72 -39.30 -0.26 2.39 16 33 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.04 0.28 7.44 -51.93 -0.39 -0.11 16 35 H 0.06 0.48 7.18 -51.93 -0.37 0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.40 6.68 -51.93 -0.35 0.05 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.40 4.25 7.66 -40.82 -0.31 3.93 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 46 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -36.60 398.63 -9.99 -46.59 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.09 Total: 1.61 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.31 Total: -3.83 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.46 Total: -51.11 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.60 -9.99 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698740739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.715 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds