Wall clock time and date at job start Tue Mar 31 2020 21:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.52998 * 109.46913 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.46906 * 55.00476 * 6 5 4 8 8 C 1.52990 * 109.47397 * 294.99911 * 6 5 4 9 9 C 1.53006 * 109.46726 * 174.99846 * 6 5 4 10 10 N 1.46497 * 109.46931 * 185.00027 * 9 6 5 11 11 C 1.34781 * 120.00032 * 180.02562 * 10 9 6 12 12 O 1.21281 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99966 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.46989 * 180.02562 * 13 11 10 15 15 C 1.76202 * 100.00029 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99780 * 0.02562 * 15 14 13 17 17 C 1.38794 * 120.00211 * 179.97438 * 15 14 13 18 18 N 1.31635 * 119.99772 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00502 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46679 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47312 * 119.99959 * 19 17 15 22 22 H 1.48500 * 109.47229 * 240.00784 * 19 17 15 23 23 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 24 24 N 1.31801 * 119.11859 * 284.72511 * 23 2 1 25 25 C 1.32337 * 120.81523 * 179.75922 * 24 23 2 26 26 C 1.38606 * 119.10407 * 0.50910 * 25 24 23 27 27 C 1.38590 * 118.39739 * 359.74815 * 26 25 24 28 28 N 1.31794 * 119.12528 * 104.99791 * 23 2 1 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.00893 * 111.00338 * 38.95410 * 4 2 1 33 33 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 34 34 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 35 35 H 1.09001 * 109.47453 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.47554 * 300.00168 * 8 6 5 37 37 H 1.09003 * 109.47194 * 59.99977 * 8 6 5 38 38 H 1.08994 * 109.47174 * 305.00262 * 9 6 5 39 39 H 1.09002 * 109.46978 * 65.00480 * 9 6 5 40 40 H 0.97000 * 120.00061 * 0.02562 * 10 9 6 41 41 H 1.09001 * 109.47701 * 300.00538 * 13 11 10 42 42 H 1.09002 * 109.46794 * 60.00537 * 13 11 10 43 43 H 0.97001 * 120.00019 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.44701 * 180.27552 * 25 24 23 45 45 H 1.07995 * 120.79523 * 179.77361 * 26 25 24 46 46 H 1.08006 * 120.44779 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5331 3.5741 7 1 3.5520 -1.0011 3.3387 8 6 1.5846 -1.6102 3.9703 9 6 2.7801 0.4459 4.7356 10 7 3.3837 -0.2534 5.8726 11 6 3.6397 0.4139 7.0153 12 8 3.3698 1.5931 7.1024 13 6 4.2601 -0.3056 8.1851 14 16 4.4764 0.8521 9.5596 15 6 5.1981 -0.2230 10.7545 16 1 5.3737 -1.2605 10.5112 17 6 5.5419 0.2636 12.0081 18 7 5.3283 1.5282 12.3044 19 14 6.3077 -0.8760 13.2747 20 1 6.4421 -2.2379 12.6980 21 1 7.6494 -0.3647 13.6536 22 1 5.4407 -0.9314 14.4791 23 6 2.0324 -0.7103 -1.2305 24 7 1.9703 -2.0258 -1.2820 25 6 2.3975 -2.6834 -2.3480 26 6 2.9246 -1.9706 -3.4134 27 6 2.9781 -0.5889 -3.3201 28 7 2.5271 0.0002 -2.2242 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.4497 -1.4979 1.4100 33 1 2.7588 1.0461 2.1183 34 1 1.0871 0.6161 2.5526 35 1 1.9504 -2.1482 4.8449 36 1 0.6288 -1.1422 4.2057 37 1 1.4536 -2.3076 3.1429 38 1 3.4317 1.2619 4.4233 39 1 1.8102 0.8474 5.0293 40 1 3.5992 -1.1966 5.8030 41 1 3.6084 -1.1217 8.4971 42 1 5.2301 -0.7070 7.8918 43 1 5.5682 1.8683 13.1806 44 1 2.3397 -3.7612 -2.3856 45 1 3.2846 -2.4797 -4.2952 46 1 3.3819 -0.0007 -4.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698740739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:29 Heat of formation + Delta-G solvation = -24.972196 kcal Electronic energy + Delta-G solvation = -25237.599922 eV Core-core repulsion = 21480.078794 eV Total energy + Delta-G solvation = -3757.521128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95287 -40.68459 -38.83131 -36.75023 -34.61245 -34.58478 -34.34786 -32.50399 -31.00239 -29.94505 -27.78956 -27.45672 -26.18033 -25.53365 -24.83000 -22.27186 -21.78472 -21.20803 -19.80296 -18.46411 -18.15405 -17.68677 -17.41638 -16.87805 -16.78111 -16.57734 -16.17294 -16.02556 -15.71245 -15.44922 -15.40081 -14.90150 -14.71128 -14.43880 -14.31951 -13.98404 -13.83676 -13.74888 -13.49083 -13.20937 -13.15356 -12.97655 -12.90476 -12.60553 -12.38986 -12.08478 -11.86219 -11.77497 -11.75741 -11.70218 -11.62326 -11.15379 -10.94974 -10.44188 -10.26586 -10.15591 -10.09240 -9.41615 -8.66135 -8.34318 -6.12373 -0.01279 0.21386 1.27859 1.41951 1.47864 1.59101 1.63098 2.25638 2.29682 2.71018 2.89462 2.99927 3.16896 3.33247 3.54561 3.81023 3.86066 3.90769 3.97665 4.03789 4.08373 4.17913 4.25413 4.29110 4.30971 4.44893 4.51506 4.52361 4.58527 4.70001 4.76559 4.80095 4.83826 4.95244 4.98667 5.03762 5.12780 5.27668 5.38368 5.42697 5.49536 5.50465 5.94101 6.14084 6.20621 6.44095 6.52593 7.07114 7.19197 7.26203 8.75228 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.001507 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.575897 B =18571.480129 C =18884.080440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 H 0.097 0.903 4 N -0.678 5.678 5 C 0.071 3.929 6 C -0.085 4.085 7 H 0.087 0.913 8 C -0.149 4.149 9 C 0.127 3.873 10 N -0.710 5.710 11 C 0.532 3.468 12 O -0.568 6.568 13 C -0.130 4.130 14 S -0.153 6.153 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.316 3.684 24 N -0.523 5.523 25 C 0.133 3.867 26 C -0.224 4.224 27 C 0.133 3.867 28 N -0.547 5.547 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.354 0.646 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.415 0.585 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.194 0.806 45 H 0.182 0.818 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -12.223 -34.826 37.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.040 3.960 3 H 0.115 0.885 4 N -0.311 5.311 5 C -0.059 4.059 6 C -0.104 4.104 7 H 0.105 0.895 8 C -0.206 4.206 9 C 0.003 3.997 10 N -0.364 5.364 11 C 0.318 3.682 12 O -0.446 6.446 13 C -0.281 4.281 14 S 0.075 5.925 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.199 1.199 23 C 0.047 3.953 24 N -0.237 5.237 25 C -0.032 4.032 26 C -0.245 4.245 27 C -0.032 4.032 28 N -0.262 5.262 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.252 0.748 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.211 0.789 45 H 0.199 0.801 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.566 -9.605 -33.946 36.304 hybrid contribution 0.291 -2.157 0.171 2.183 sum -8.275 -11.762 -33.776 36.710 Atomic orbital electron populations 1.22349 0.94031 1.02982 1.03261 1.20105 0.93914 0.96510 0.85465 0.88491 1.60258 1.58291 1.09883 1.02667 1.21873 1.00322 0.94824 0.88864 1.21194 1.01141 0.95754 0.92319 0.89465 1.21879 0.98524 0.98227 1.02007 1.21363 0.97887 0.95204 0.85286 1.45730 1.63808 1.14412 1.12440 1.20064 0.77551 0.86660 0.83903 1.90689 1.53255 1.17651 1.83019 1.23374 1.04763 1.03142 0.96803 1.85579 1.81571 1.17152 1.08245 1.23250 1.47271 0.98225 1.00665 0.89886 1.26133 0.95708 0.97277 1.00033 1.70195 1.46334 1.15574 1.22707 0.84893 0.77684 0.78187 0.77097 1.18026 1.19953 1.19891 1.23158 0.91000 0.87166 0.93932 1.68184 1.18219 1.09916 1.27362 1.23876 0.89296 1.02506 0.87517 1.23288 1.02222 0.96291 1.02719 1.23802 0.91050 0.93802 0.94538 1.68193 1.12422 1.42894 1.02707 0.91735 0.90439 0.92053 0.82458 0.91007 0.93587 0.92115 0.92538 0.91020 0.92533 0.92192 0.74763 0.87149 0.87281 0.91997 0.78871 0.80107 0.78956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.14 71.98 0.66 -1.41 16 2 C 0.15 2.37 2.99 44.17 0.13 2.50 16 3 H 0.10 1.62 7.78 -2.39 -0.02 1.60 16 4 N -0.68 -10.15 6.04 -495.45 -2.99 -13.14 16 5 C 0.07 1.02 4.94 86.30 0.43 1.45 16 6 C -0.08 -1.29 2.63 -10.80 -0.03 -1.32 16 7 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 8 C -0.15 -1.93 8.84 71.98 0.64 -1.30 16 9 C 0.13 2.81 5.06 86.38 0.44 3.25 16 10 N -0.71 -18.02 5.28 -463.06 -2.45 -20.46 16 11 C 0.53 19.92 7.85 87.66 0.69 20.61 16 12 O -0.57 -26.78 15.86 -3.03 -0.05 -26.83 16 13 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 14 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 15 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 19 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.32 5.68 6.60 138.75 0.92 6.60 16 24 N -0.52 -8.62 10.10 -187.84 -1.90 -10.52 16 25 C 0.13 1.39 11.31 84.70 0.96 2.35 16 26 C -0.22 -1.64 10.17 22.44 0.23 -1.41 16 27 C 0.13 1.47 11.30 84.70 0.96 2.43 16 28 N -0.55 -9.77 10.32 -187.84 -1.94 -11.70 16 29 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.08 0.82 7.45 -2.39 -0.02 0.81 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.35 4.90 6.72 -89.70 -0.60 4.30 16 33 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 34 H 0.05 0.61 7.44 -2.39 -0.02 0.59 16 35 H 0.06 0.80 7.18 -2.39 -0.02 0.78 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.79 6.68 -2.39 -0.02 0.77 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.42 7.79 7.66 -92.71 -0.71 7.08 16 41 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 42 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 46 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -82.05 398.63 -0.93 -82.98 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.32 Total: 20.25 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 7.56 Total: -0.60 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -8.99 Total: -111.95 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -82.05 -0.93 -82.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698740739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.010 kcal (2) G-P(sol) polarization free energy of solvation -82.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds