Wall clock time and date at job start Tue Mar 31 2020 20:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46863 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00216 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 N 1.46506 * 109.47237 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00073 * 179.72302 * 6 5 4 8 8 H 1.08004 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38805 * 119.99849 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00455 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46615 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47374 * 119.99782 * 11 9 7 14 14 H 1.48495 * 109.47187 * 240.00172 * 11 9 7 15 15 N 1.46498 * 109.46830 * 240.00020 * 2 1 3 16 16 C 1.34779 * 119.99845 * 85.00357 * 15 2 1 17 17 O 1.21283 * 120.00252 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99850 * 179.97438 * 16 15 2 19 19 C 1.53003 * 109.54081 * 59.82620 * 18 16 15 20 20 F 1.39896 * 109.47357 * 59.99605 * 19 18 16 21 21 F 1.39898 * 109.46941 * 179.97438 * 19 18 16 22 22 F 1.39901 * 109.46713 * 299.99515 * 19 18 16 23 23 C 1.53167 * 109.54413 * 299.55442 * 18 16 15 24 24 C 1.53089 * 109.16605 * 297.11276 * 23 18 16 25 25 O 1.42904 * 109.41332 * 302.39287 * 24 23 18 26 26 C 1.42898 * 114.09858 * 61.15922 * 25 24 23 27 27 C 1.53093 * 109.41234 * 298.83801 * 26 25 24 28 28 H 1.09002 * 109.46750 * 59.99849 * 1 2 3 29 29 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47043 * 299.99871 * 1 2 3 31 31 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 32 32 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 33 33 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 34 34 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 35 35 H 0.97005 * 119.99811 * 0.02562 * 6 5 4 36 36 H 0.97000 * 120.00679 * 179.97438 * 10 9 7 37 37 H 0.96994 * 120.00130 * 264.99650 * 15 2 1 38 38 H 1.08998 * 109.52693 * 57.02314 * 23 18 16 39 39 H 1.09005 * 109.52262 * 177.21141 * 23 18 16 40 40 H 1.09001 * 109.48504 * 182.41089 * 24 23 18 41 41 H 1.08999 * 109.47855 * 62.37592 * 24 23 18 42 42 H 1.09006 * 109.48236 * 178.85822 * 26 25 24 43 43 H 1.09002 * 109.49080 * 58.82792 * 26 25 24 44 44 H 1.08997 * 109.52438 * 297.70311 * 27 26 25 45 45 H 1.09005 * 109.52262 * 177.51347 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3034 2.5101 7 6 5.3957 -1.3445 2.7769 8 1 6.0945 -0.8678 2.1054 9 6 5.8584 -1.9989 3.9102 10 7 5.0068 -2.5794 4.7288 11 14 7.6897 -2.0544 4.2745 12 1 8.4285 -1.3315 3.2083 13 1 7.9535 -1.4084 5.5854 14 1 8.1429 -3.4678 4.3191 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8583 1.1585 -2.4117 18 6 2.6499 -0.7285 -3.5875 19 6 1.7097 -1.8858 -3.9304 20 9 0.4253 -1.3871 -4.1730 21 9 2.1775 -2.5437 -5.0730 22 9 1.6664 -2.7845 -2.8591 23 6 4.0586 -1.2702 -3.3266 24 6 5.0067 -0.0980 -3.0611 25 8 4.9843 0.7934 -4.1779 26 6 3.7025 1.3678 -4.4403 27 6 2.7020 0.2544 -4.7612 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7716 1.2055 32 1 1.6054 -0.2617 2.1369 33 1 3.8533 0.4370 1.3574 34 1 3.9995 -1.0727 0.4259 35 1 3.4258 -1.7350 3.1111 36 1 5.3301 -3.0370 5.5207 37 1 2.2490 -1.6317 -1.1526 38 1 4.0408 -1.9283 -2.4579 39 1 4.4023 -1.8263 -4.1989 40 1 6.0194 -0.4748 -2.9171 41 1 4.6856 0.4335 -2.1653 42 1 3.7754 2.0469 -5.2898 43 1 3.3642 1.9186 -3.5626 44 1 3.0182 -0.2709 -5.6624 45 1 1.7138 0.6868 -4.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699102689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:24 Heat of formation + Delta-G solvation = -233.832062 kcal Electronic energy + Delta-G solvation = -32204.228668 eV Core-core repulsion = 27420.748334 eV Total energy + Delta-G solvation = -4783.480334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.55777 -48.03711 -47.97793 -41.11341 -38.69444 -36.69664 -34.79158 -34.45926 -32.14152 -31.39051 -30.57798 -27.95148 -27.87215 -24.48177 -24.10239 -23.86583 -22.83285 -21.55545 -20.74733 -20.11081 -18.78386 -18.72176 -18.53880 -17.23755 -16.90872 -16.49947 -16.20842 -15.47810 -15.25161 -15.00486 -14.91828 -14.80529 -14.59190 -14.40672 -14.29286 -14.14969 -14.11412 -14.04362 -13.73479 -13.58228 -13.38905 -12.94495 -12.74890 -12.69004 -12.62127 -12.27783 -11.94651 -11.72227 -11.31440 -11.25123 -11.10464 -10.88357 -10.85922 -10.69219 -10.63234 -10.18918 -10.06375 -9.76249 -9.70970 -9.19579 -8.92254 -6.98044 -5.81425 -3.10702 1.87187 2.49522 2.70745 3.29376 3.40184 3.43497 3.46064 3.48156 3.64284 3.68015 4.17716 4.18568 4.34192 4.52983 4.55865 4.85483 4.90131 4.97070 5.10318 5.13929 5.18485 5.25572 5.32672 5.45130 5.49910 5.58432 5.61666 5.65828 5.66720 5.77408 5.85390 5.92449 6.14583 6.19403 6.24906 6.34385 6.70892 6.76481 6.93687 7.23515 7.65471 7.87099 8.37193 9.48632 10.05494 10.39981 11.41426 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003479 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.661350 B = 8046.904687 C = 8711.091621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.709 5.709 16 C 0.525 3.475 17 O -0.516 6.516 18 C -0.129 4.129 19 C 0.465 3.535 20 F -0.174 7.174 21 F -0.172 7.172 22 F -0.175 7.175 23 C -0.150 4.150 24 C 0.064 3.936 25 O -0.378 6.378 26 C 0.054 3.946 27 C -0.133 4.133 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.405 0.595 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 3.339 -20.419 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.175 4.175 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.581 5.581 11 Si 0.737 3.263 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.361 5.361 16 C 0.308 3.692 17 O -0.392 6.392 18 C -0.133 4.133 19 C 0.411 3.589 20 F -0.155 7.155 21 F -0.154 7.154 22 F -0.156 7.156 23 C -0.188 4.188 24 C -0.013 4.013 25 O -0.297 6.297 26 C -0.022 4.022 27 C -0.171 4.171 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.242 0.758 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.506 4.231 -20.552 22.642 hybrid contribution 0.393 -1.196 0.607 1.397 sum -8.113 3.036 -19.945 21.745 Atomic orbital electron populations 1.22166 0.95063 1.02281 1.02500 1.21094 0.93879 0.97688 0.83326 0.88995 1.22089 0.98182 1.00950 0.96256 1.20623 0.90240 0.95653 0.90771 1.42369 1.05407 1.64970 1.25030 1.19252 0.83720 1.28675 1.05512 0.91185 1.24739 0.97708 1.00824 0.97603 1.69665 1.32722 1.40766 1.14989 0.86132 0.85049 0.77256 0.77847 1.20524 1.21803 1.21827 1.46317 1.65725 1.14676 1.09426 1.19583 0.78299 0.87477 0.83817 1.90678 1.49033 1.15035 1.84465 1.22334 0.97244 0.94986 0.98786 1.20110 0.80395 0.83532 0.74886 1.93220 1.40845 1.87209 1.94266 1.93197 1.88293 1.82569 1.51311 1.93164 1.96479 1.70186 1.55781 1.22406 0.90693 1.00410 1.05326 1.22565 1.00432 0.89017 0.89311 1.87947 1.30426 1.61629 1.49669 1.22807 0.82309 0.93972 1.03128 1.22142 1.03212 0.96828 0.94902 0.92342 0.92353 0.91199 0.91209 0.89905 0.96384 0.96613 0.78279 0.93517 0.75788 0.88641 0.88330 0.87215 0.92242 0.88170 0.90037 0.89186 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.45 16 2 C 0.14 1.82 2.57 -67.93 -0.17 1.65 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 4 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.15 2.92 6.15 -4.04 -0.02 2.90 16 6 N -0.73 -17.98 5.60 -59.91 -0.34 -18.32 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 10 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 11 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 N -0.71 -8.50 4.10 -53.80 -0.22 -8.72 16 16 C 0.53 6.43 4.85 -10.98 -0.05 6.38 16 17 O -0.52 -7.40 13.50 5.55 0.07 -7.32 16 18 C -0.13 -1.32 0.25 -155.48 -0.04 -1.36 16 19 C 0.47 4.82 2.22 37.16 0.08 4.90 16 20 F -0.17 -1.95 16.58 2.25 0.04 -1.91 16 21 F -0.17 -1.72 16.18 2.25 0.04 -1.68 16 22 F -0.17 -1.86 14.65 2.25 0.03 -1.82 16 23 C -0.15 -1.43 4.61 -26.60 -0.12 -1.56 16 24 C 0.06 0.68 6.62 37.20 0.25 0.93 16 25 O -0.38 -4.38 10.77 -35.23 -0.38 -4.76 16 26 C 0.05 0.56 6.55 37.21 0.24 0.80 16 27 C -0.13 -1.26 4.31 -26.59 -0.11 -1.37 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.29 7.75 -51.93 -0.40 -0.11 16 35 H 0.38 9.88 7.67 -40.82 -0.31 9.57 16 36 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 37 H 0.40 4.61 6.18 -40.82 -0.25 4.36 16 38 H 0.10 0.88 7.29 -51.93 -0.38 0.50 16 39 H 0.10 0.83 7.73 -51.93 -0.40 0.43 16 40 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.72 7.38 -51.93 -0.38 0.34 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.98 5.80 -51.93 -0.30 0.68 16 44 H 0.09 0.74 7.72 -51.93 -0.40 0.34 16 45 H 0.09 0.88 7.79 -51.93 -0.40 0.48 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -31.11 367.47 -6.06 -37.17 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.56 Total: 9.35 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 0.02 Total: 2.49 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.17 Total: -54.08 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.30 Total: -12.08 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.11 -6.06 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699102689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.666 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds