Wall clock time and date at job start Tue Mar 31 2020 20:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.36944 * 119.99630 * 180.02562 * 6 5 4 8 8 H 1.07992 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99426 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99844 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00477 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46802 * 90.00048 * 11 9 7 13 13 H 1.48500 * 109.47425 * 209.99678 * 11 9 7 14 14 H 1.48498 * 109.47060 * 330.00070 * 11 9 7 15 15 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 16 16 C 1.34778 * 119.99771 * 274.99826 * 15 2 1 17 17 O 1.21279 * 120.00041 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99935 * 180.02562 * 16 15 2 19 19 C 1.52997 * 109.54307 * 59.82481 * 18 16 15 20 20 F 1.39897 * 109.47458 * 60.00193 * 19 18 16 21 21 F 1.39908 * 109.47008 * 180.02562 * 19 18 16 22 22 F 1.39902 * 109.46981 * 299.99783 * 19 18 16 23 23 C 1.53177 * 109.54287 * 299.55671 * 18 16 15 24 24 C 1.53091 * 109.16307 * 297.11465 * 23 18 16 25 25 O 1.42910 * 109.41629 * 302.39024 * 24 23 18 26 26 C 1.42899 * 114.09272 * 61.15629 * 25 24 23 27 27 C 1.53090 * 109.41784 * 298.84348 * 26 25 24 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 36 36 H 0.96993 * 120.00182 * 180.02562 * 10 9 7 37 37 H 0.96998 * 120.00630 * 95.00428 * 15 2 1 38 38 H 1.08998 * 109.52526 * 57.01980 * 23 18 16 39 39 H 1.08998 * 109.52386 * 177.20996 * 23 18 16 40 40 H 1.09004 * 109.48209 * 182.40934 * 24 23 18 41 41 H 1.08997 * 109.48493 * 62.37109 * 24 23 18 42 42 H 1.09010 * 109.47714 * 178.86233 * 26 25 24 43 43 H 1.09002 * 109.49348 * 58.83545 * 26 25 24 44 44 H 1.09003 * 109.52285 * 297.70463 * 27 26 25 45 45 H 1.09000 * 109.52262 * 177.52124 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3954 -1.3402 -2.7794 8 1 6.0938 -0.8600 -2.1101 9 6 5.8580 -1.9946 -3.9128 10 7 7.1480 -2.0295 -4.1721 11 14 4.6500 -2.8257 -5.0701 12 1 4.2148 -1.8584 -6.1094 13 1 5.3069 -3.9882 -5.7199 14 1 3.4681 -3.2912 -4.3010 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8581 1.1584 2.4117 18 6 2.6498 -0.7285 3.5875 19 6 4.0508 -1.2830 3.3218 20 9 4.9166 -0.2307 3.0054 21 9 4.5158 -1.9425 4.4647 22 9 4.0008 -2.1835 2.2522 23 6 1.7002 -1.8776 3.9398 24 6 0.3218 -1.3044 4.2791 25 8 0.4461 -0.3752 5.3578 26 6 1.2847 0.7451 5.0689 27 6 2.7018 0.2543 4.7612 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.4260 -1.7351 -3.1110 36 1 7.4713 -2.4864 -4.9642 37 1 2.2490 -1.6318 1.1527 38 1 1.6143 -2.5532 3.0887 39 1 2.0902 -2.4218 4.8000 40 1 -0.3466 -2.1141 4.5721 41 1 -0.0852 -0.7950 3.4057 42 1 1.3101 1.4120 5.9308 43 1 0.8905 1.2816 4.2058 44 1 3.1121 -0.2468 5.6380 45 1 3.3322 1.1035 4.4976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699102690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:28 Heat of formation + Delta-G solvation = -228.538130 kcal Electronic energy + Delta-G solvation = -32304.812614 eV Core-core repulsion = 27521.561842 eV Total energy + Delta-G solvation = -4783.250772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.40809 -47.89504 -47.81882 -41.18615 -38.80461 -36.80712 -34.86615 -34.60113 -32.18789 -31.49574 -30.84236 -28.37691 -27.87318 -24.50145 -24.20662 -23.79212 -22.83963 -21.38663 -20.85234 -20.16822 -18.69714 -18.58266 -18.52994 -17.62240 -17.03092 -16.53434 -16.34256 -15.73999 -15.16758 -15.08239 -14.86360 -14.70056 -14.54015 -14.28827 -14.23203 -14.13512 -14.07952 -13.95732 -13.93531 -13.65977 -13.42656 -12.98331 -12.86247 -12.64859 -12.60845 -12.32120 -12.14920 -11.83547 -11.58328 -11.38382 -11.30958 -10.98642 -10.96608 -10.79255 -10.59280 -10.27930 -10.17375 -9.78191 -9.60602 -9.28602 -8.90978 -7.25554 -5.77611 -3.13846 1.87028 2.55422 2.65626 3.34753 3.37175 3.37326 3.43235 3.45627 3.52585 3.68455 4.16242 4.20338 4.30690 4.44367 4.57282 4.67595 4.74744 4.86863 4.99030 5.01424 5.03353 5.13998 5.24234 5.30492 5.41905 5.44406 5.49283 5.54907 5.57129 5.65718 5.71743 5.81720 5.85680 6.05572 6.09523 6.26721 6.66688 6.68862 6.77929 7.17284 7.82007 7.98524 8.41032 9.19799 9.91739 10.11193 11.40862 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003541 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.257725 B = 7904.953133 C = 8819.337396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.756 5.756 7 C -0.245 4.245 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.710 5.710 16 C 0.526 3.474 17 O -0.515 6.515 18 C -0.129 4.129 19 C 0.464 3.536 20 F -0.169 7.169 21 F -0.174 7.174 22 F -0.171 7.171 23 C -0.150 4.150 24 C 0.065 3.935 25 O -0.379 6.379 26 C 0.055 3.945 27 C -0.134 4.134 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.405 0.595 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 1.529 20.096 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.375 4.375 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.363 5.363 16 C 0.309 3.691 17 O -0.391 6.391 18 C -0.134 4.134 19 C 0.410 3.590 20 F -0.151 7.151 21 F -0.155 7.155 22 F -0.153 7.153 23 C -0.188 4.188 24 C -0.012 4.012 25 O -0.297 6.297 26 C -0.021 4.021 27 C -0.172 4.172 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.242 0.758 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.249 2.380 20.290 26.103 hybrid contribution 0.043 -1.311 -1.336 1.873 sum -16.206 1.069 18.953 24.960 Atomic orbital electron populations 1.22165 0.94983 1.02166 1.02587 1.21071 0.93799 0.97893 0.83259 0.88809 1.22131 0.98273 1.00870 0.96543 1.20624 0.90000 0.96099 0.90324 1.42692 1.05353 1.66128 1.26011 1.19061 0.82196 1.29426 1.06779 0.89295 1.24685 0.95609 1.00641 0.98232 1.69707 1.11730 1.48226 1.28520 0.86523 0.80837 0.79464 0.81515 1.21068 1.21713 1.20409 1.46299 1.65910 1.14740 1.09331 1.19584 0.78799 0.87113 0.83596 1.90679 1.49568 1.14772 1.84048 1.22309 0.92211 1.00127 0.98714 1.20055 0.88105 0.76350 0.74526 1.93255 1.72330 1.56755 1.92724 1.93193 1.90212 1.81675 1.50451 1.93193 1.96466 1.68855 1.56747 1.22387 0.96260 0.95562 1.04580 1.22528 0.94588 0.93043 0.91021 1.87944 1.68315 1.34888 1.38583 1.22826 0.87799 0.88253 1.03236 1.22148 1.01130 0.98826 0.95132 0.91201 0.92381 0.92295 0.91292 0.89958 0.95500 0.95556 0.80709 0.93043 0.75790 0.88963 0.88214 0.87603 0.92644 0.88045 0.90036 0.89080 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.70 2.57 -67.93 -0.17 1.53 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 4 C -0.14 -1.92 4.87 -26.73 -0.13 -2.05 16 5 C 0.16 2.98 6.15 -4.04 -0.02 2.96 16 6 N -0.76 -17.95 5.41 -59.91 -0.32 -18.28 16 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.63 13.97 55.49 0.78 -28.85 16 11 Si 0.89 22.03 27.74 -169.99 -4.71 17.32 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 15 N -0.71 -8.08 4.10 -53.80 -0.22 -8.30 16 16 C 0.53 6.23 4.85 -10.98 -0.05 6.18 16 17 O -0.51 -7.18 13.50 5.56 0.08 -7.10 16 18 C -0.13 -1.29 0.25 -155.48 -0.04 -1.33 16 19 C 0.46 5.48 2.22 37.16 0.08 5.56 16 20 F -0.17 -2.38 16.58 2.25 0.04 -2.34 16 21 F -0.17 -1.93 16.18 2.25 0.04 -1.90 16 22 F -0.17 -2.18 14.65 2.25 0.03 -2.15 16 23 C -0.15 -1.15 4.61 -26.59 -0.12 -1.27 16 24 C 0.07 0.50 6.62 37.20 0.25 0.75 16 25 O -0.38 -3.61 10.77 -35.23 -0.38 -3.99 16 26 C 0.06 0.50 6.55 37.20 0.24 0.74 16 27 C -0.13 -1.24 4.31 -26.60 -0.11 -1.36 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.52 7.75 -51.93 -0.40 0.12 16 35 H 0.36 8.21 5.53 -40.82 -0.23 7.98 16 36 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 37 H 0.40 4.33 6.18 -40.82 -0.25 4.08 16 38 H 0.09 0.60 7.29 -51.93 -0.38 0.22 16 39 H 0.10 0.70 7.73 -51.93 -0.40 0.30 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 42 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.08 0.87 5.80 -51.93 -0.30 0.57 16 44 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 45 H 0.10 0.95 7.79 -51.93 -0.40 0.55 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -33.56 364.35 -5.70 -39.26 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.52 Total: 7.49 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 0.01 Total: 3.35 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.23 Total: -55.43 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.30 Total: -11.10 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.56 -5.70 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699102690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.281 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds